Rh6AG458800

Plant pleckstrin homology-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007321
Physical Location & Seq
Forward (+)
64181968 .. 64184471
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG458800.1

Sequence Viewer

Length: 1194 bp
ATGGTGTCAGTGAGCTCTTGTAGTTTGAAATGCTCGACGAATCGACATGGGTTGGAGAACATAGACGAAAATGGTGGCACCAGTATTGGAGCGGCGGGTTTATGTGCCCCGCCACCTGAAACTCCGACGGAGTCCATGGAGTTTCTGGCGAGATCATGGAGCCTCTCGGCCATGGAGATCTCCAAAGCTCTTTCCCACTCACATGTTGCTTCTAAGAGTCTTGAGAATAAGTCAGCATTCTCTTATGATGGTATTGCTGAAACTCGCCATTCAAGTTCCATGCGTTTGAGCGAATCATCTCTGCCTGGTGGACTTAGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCATGCACTTCATCCAGAGTTCCTTTCCAGTCAACATCAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGTAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAAGAAATGAGAAGCCAAAATGCCCAGTTGCACGCGGCAGTTTCTGTGGCTGGAGTTGCTGCTGCTGTAGCAGCACTCGCAGCTTCAGCTGCATTGCCTGAAACTGAAACATCAGCTGCCAGTGCCCACCACAAAGCAGCAGTATCCGAGAGGACTGAAATTTCGACTGCACTAGCATCTGCAGCAGCTCTGGTAGCTTCACGCTGCATCGAGATTGCAGAGGAGATGGGAGCTGATCACGACCATATTCTATCAGTTGTCAGTTCTGCAGTTAACGCGAGGACTAATGGAGACATCATGACCTTAACAGCTGGAGCTGCCACAGCTTTACGAGGAGCTGCTACACTTAAGGTAAGGCTACAAAAGGAGTATGGAGGCACCACTTTTGCACTGGCTGAGGAAAAATGTGATGGAAAAGAATCAAACTCAGCATTGAACTTTGTCTCAAAAGGAGGGGAACTTCTGAAACGCACAAGGAAAGGTGATCTCCACTGGAAACAAGTTTCTTTCAACACCAACTCAAATGGGCAGCAATCAATGTGCACCCACCATCTCAAAATCCTAGAGATATACATATGGGTAGCAAGGGTAGCACTCAAAACTGTTAAGCTTGTACAAAGTGATGGATCTGCAAATTGGGATGGTGTATGTTCTCTCATGAGCTGCTTCAAGATTTCTATAATTGGCAGATTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

397

Amino Acids

42.47

Weight (kDa)

8.36

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 39 - 293 7.2e-88 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 77, 872
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 2 cut(s) 530, 773
AciI CCGC 4 cut(s) 92, 95, 110, 530
AclWI GGATC 1 cut(s) 1129
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 564
AfaI GTAC 1 cut(s) 1110
AflII CTTAAG 1 cut(s) 842
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 5 cut(s) 28, 273, 931, 1006, 1165
AjnI CCWGG 1 cut(s) 304
Alw21I GWGCWC 2 cut(s) 17, 1040
Alw26I GTCTC 2 cut(s) 780, 943
Alw44I GTGCAC 1 cut(s) 1036
AlwI GGATC 1 cut(s) 1129
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 1036
ApoI RAATTY 1 cut(s) 654
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
AsuHPI GGTGA 1 cut(s) 989
BaeGI GKGCMC 3 cut(s) 109, 622, 1040
BanI GGYRCC 2 cut(s) 77, 872
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 17, 1040
BbvCI CCTCAGC 1 cut(s) 891
BccI CCATC 7 cut(s) 242, 459, 715, 899, 1053, 1112, 1130
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 2 cut(s) 414, 730
BcoDI GTCTC 2 cut(s) 780, 943
BfaI CTAG 2 cut(s) 668, 1058
BfmI CTRYAG 3 cut(s) 561, 675, 762
BfrI CTTAAG 1 cut(s) 842
BfuI GTATCC 1 cut(s) 649
BglII AGATCT 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 3 cut(s) 79, 161, 874
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 2 cut(s) 680, 711
BmuI ACTGGG 1 cut(s) 514
BpmI CTGGAG 2 cut(s) 567, 828
Bpu10I CCTNAGC 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 135, 171
Bse1I ACTGG 6 cut(s) 81, 399, 520, 615, 891, 992
Bse3DI GCAATG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 135, 171
BseGI GGATG 2 cut(s) 382, 1141
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 882, 936
BseNI ACTGG 6 cut(s) 81, 399, 520, 615, 891, 992
BseRI GAGGAG 2 cut(s) 731, 843
BseSI GKGCMC 3 cut(s) 109, 622, 1040
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 2 cut(s) 530, 773
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 2 cut(s) 77, 872
BsiHKAI GWGCWC 2 cut(s) 17, 1040
BsmAI GTCTC 2 cut(s) 780, 943
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 4 cut(s) 17, 109, 622, 1040
Bsp1407I TGTACA 1 cut(s) 1108
Bsp143I GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
Bsp19I CCATGG 2 cut(s) 135, 171
BspACI CCGC 4 cut(s) 92, 95, 110, 530
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 883, 935
BspFNI CGCG 2 cut(s) 530, 773
BspHI TCATGA 2 cut(s) 792, 1152
BspLI GGNNCC 3 cut(s) 79, 161, 874
BspMAI CTGCAG 2 cut(s) 679, 766
BspPI GGATC 1 cut(s) 1129
BspT107I GGYRCC 2 cut(s) 77, 872
BspTI CTTAAG 1 cut(s) 842
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 587
BsrGI TGTACA 1 cut(s) 1108
BsrI ACTGG 6 cut(s) 81, 399, 520, 615, 891, 992
BssECI CCNNGG 2 cut(s) 135, 171
BssMI GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
BssT1I CCWWGG 2 cut(s) 135, 171
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 341, 1099
BstAFI CTTAAG 1 cut(s) 842
BstAUI TGTACA 1 cut(s) 1108
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 4 cut(s) 213, 314, 891, 922
BstDSI CCRYGG 2 cut(s) 135, 171
BstF5I GGATG 2 cut(s) 382, 1141
BstFNI CGCG 2 cut(s) 530, 773
BstKTI GATC 7 cut(s) 155, 180, 417, 478, 733, 982, 1124
BstMAI GTCTC 2 cut(s) 780, 943
BstMBI GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 206, 442
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 3 cut(s) 561, 675, 762
BstSLI GKGCMC 3 cut(s) 109, 622, 1040
BstUI CGCG 2 cut(s) 530, 773
BstX2I RGATCY 2 cut(s) 177, 1121
BstYI RGATCY 2 cut(s) 177, 1121
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 2 cut(s) 135, 171
BtsCI GGATG 2 cut(s) 382, 1141
BtsIMutI CAGTG 5 cut(s) 15, 346, 622, 884, 985
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 2 cut(s) 792, 1152
Csp6I GTAC 1 cut(s) 1109
CviQI GTAC 1 cut(s) 1109
DdeI CTNAG 4 cut(s) 213, 314, 891, 922
DpnI GATC 7 cut(s) 154, 179, 416, 477, 732, 981, 1123
DpnII GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
EaeI YGGCCR 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 135, 171
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 564
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 135, 171
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 135, 171
FauI CCCGC 2 cut(s) 88, 117
FauNDI CATATG 1 cut(s) 1070
FbaI TGATCA 2 cut(s) 414, 730
FokI GGATG 2 cut(s) 369, 1148
FriOI GRGCYC 1 cut(s) 17
FspBI CTAG 2 cut(s) 668, 1058
GsuI CTGGAG 2 cut(s) 567, 828
HaeIII GGCC 1 cut(s) 170
HincII GTYRAC 2 cut(s) 404, 769
HindII GTYRAC 2 cut(s) 404, 769
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 5 cut(s) 40, 131, 217, 293, 914
HpaI GTTAAC 1 cut(s) 769
HphI GGTGA 1 cut(s) 989
Hpy166II GTNNAC 4 cut(s) 311, 404, 769, 1038
Hpy188I TCNGA 4 cut(s) 126, 324, 643, 960
Hpy188III TCNNGA 7 cut(s) 221, 386, 706, 734, 793, 1153, 1165
Hpy8I GTNNAC 4 cut(s) 311, 404, 769, 1038
Hpy99I CGWCG 2 cut(s) 40, 130
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 341, 1099
HpyF3I CTNAG 4 cut(s) 213, 314, 891, 922
Ksp22I TGATCA 2 cut(s) 414, 730
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
LmnI GCTCC 5 cut(s) 89, 159, 725, 809, 830
LweI GCATC 2 cut(s) 680, 711
MaeI CTAG 2 cut(s) 668, 1058
MalI GATC 7 cut(s) 154, 179, 416, 477, 732, 981, 1123
MbiI CCGCTC 1 cut(s) 92
MboI GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 2 cut(s) 177, 1121
MhlI GDGCHC 4 cut(s) 17, 109, 622, 1040
MluCI AATT 4 cut(s) 410, 654, 1129, 1176
MlyI GAGTC 2 cut(s) 140, 226
MmeI TCCRAC 2 cut(s) 33, 149
MseI TTAA 5 cut(s) 470, 768, 800, 843, 1101
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 3 cut(s) 584, 611, 806
MspCI CTTAAG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 2 cut(s) 530, 773
NcoI CCATGG 2 cut(s) 135, 171
NdeI CATATG 1 cut(s) 1070
NdeII GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
NlaIV GGNNCC 3 cut(s) 79, 161, 874
NmeAIII GCCGAG 1 cut(s) 146
NspI RCATGY 2 cut(s) 206, 442
PagI TCATGA 2 cut(s) 792, 1152
PciI ACATGT 1 cut(s) 202
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 3 cut(s) 40, 293, 914
PflFI GACNNNGTC 1 cut(s) 130
PleI GAGTC 2 cut(s) 139, 225
PpsI GAGTC 2 cut(s) 139, 225
PscI ACATGT 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 3 cut(s) 79, 161, 874
PstI CTGCAG 2 cut(s) 679, 766
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 2 cut(s) 177, 1121
PsyI GACNNNGTC 1 cut(s) 130
PvuII CAGCTG 3 cut(s) 584, 611, 806
RsaI GTAC 1 cut(s) 1110
RsaNI GTAC 1 cut(s) 1109
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 5 cut(s) 470, 768, 800, 843, 1101
Sau3AI GATC 7 cut(s) 152, 177, 414, 475, 730, 979, 1121
SchI GAGTC 2 cut(s) 140, 226
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 4 cut(s) 17, 109, 622, 1040
SfaNI GCATC 2 cut(s) 680, 711
SfcI CTRYAG 3 cut(s) 561, 675, 762
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 221, 842
SmoI CTYRAG 2 cut(s) 221, 842
Sse9I AATT 4 cut(s) 410, 654, 1129, 1176
SsiI CCGC 4 cut(s) 92, 95, 110, 530
SspMI CTAG 2 cut(s) 668, 1058
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 135, 171
TaaI ACNGT 2 cut(s) 341, 1099
TaqI TCGA 4 cut(s) 35, 43, 659, 705
TasI AATT 4 cut(s) 410, 654, 1129, 1176
TatI WGTACW 1 cut(s) 1108
TauI GCSGC 2 cut(s) 95, 533
TfiI GAWTC 3 cut(s) 40, 293, 914
Tru1I TTAA 5 cut(s) 470, 768, 800, 843, 1101
Tru9I TTAA 5 cut(s) 470, 768, 800, 843, 1101
TscAI CASTG 5 cut(s) 15, 346, 622, 891, 992
TspDTI ATGAA 3 cut(s) 360, 365, 371
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 5 cut(s) 15, 346, 622, 891, 992
Tth111I GACNNNGTC 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 842
VneI GTGCAC 1 cut(s) 1036
XapI RAATTY 1 cut(s) 654
XceI RCATGY 2 cut(s) 206, 442
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 883
XspI CTAG 2 cut(s) 668, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.