Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Reverse (-)

4623870 .. 4626331

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAACCTACTTTTTCTTCCTTGTTAAATGCGTACTGTGCTGTTGTACCTCCTCTTCATCACCATCGTCTTATTCTAGATTCTCCATTGGTAGCCGAGCTTGAAAATTTGAAATGCTCGACGAATCGACATGGGTTGGAGAACATAGACGAAAATGGTGGCACCAGTATTGGAGCGGCCGGTTTATGTGCCCCGCCACCCGAAACTCCGACGGAGTCCATGGAGTTTCTGGCGAGATCATGGAGCCTTTCGGCCATGGAGATCTCCAAAGCTCTTTCCCACTCACATGTTGCTTCTAAGAGTCTTGAGAATAAGTCAGCATTCTCTTATGATGGTACTGCTGAAACTCGCCATTCAAGTTCCATGCGTTTGAGCGAATCATCTCTGCCTGGTGGAGTTAGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCACGCACTTCATCCAGAGTTCCTTTCCAGTCAACAACAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGTAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAAGAAATGAGAAGCCAAAATGCCCAGTTGCACGCGGCAGTTTCTGTGGCTGGAGTTGCTGCTGCTGTAGCAGCACTTGCAGCTTCAACTGCATTGCCTGAAACTGAAACATCAGCTGCCAGTGCCCACCACAAAGCAGCAGTATCCGAGAGGACTGAAATTTCGACTGCACTAGCATCTGCAGCGGCTCTGGTAGCTTCACGCTGCATTGAGATTGCAGAGGAGATGGGAGCTGATCACGACCATATTCTATCAGTTGTCAGTTCTGCAGTTAACGCAAGGACTAATGGAGACATCATGACCTTAACAGCTGGAGCTGCCACAGCTTTACGAGGAGCTGCTACACTTAAGGTAAGGCTACAAAAGGAGTATGGAGGCACCACTTTTGCACTGGCTGAGGAAAAATGTGATGGAAAAGAATCAAACTCAGCATTGACCTTTGTCTCAAAAGGAGGGGAACTTCTGAAACGCACAAGGAAAGGTGATCTCCACTGGAAACAAGTTTCTTTCGACACCAACTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAACACATGGCGGGAACATTTACAAAGAAGAAGACATGTGTAGTCTCTGAAGTCTACTGTGACATAGCAGCGTGGCCAGGAAGGGAGAGGGAAGATTGCAGCAAACCAAGGGCATACTTTGGCATCAAAACAGCTGACAGGACAATAGAATTTGAATGCAGAAGTAAAAGGGACAAGCATATGTGGACTGAGGGGATTCAGAATATGTTGAATTTCATACCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

453

Amino Acids

48.99

Weight (kDa)

8.47

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	67 - 321	4.5e-88	Auxin canalisation
PH_2	PF08458	346 - 448	7.7e-42	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1099
AccB1I	GGYRCC	2 cut(s)	161, 956
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	1185
AccII	CGCG	1 cut(s)	614
AciI	CCGC	5 cut(s)	176, 194, 614, 764, 1142
AcoI	YGGCCR	3 cut(s)	177, 252, 1205
AcsI	RAATTY	4 cut(s)	106, 738, 1280, 1342
AcuI	CTGAAG	1 cut(s)	1200
AfaI	GTAC	3 cut(s)	35, 48, 337
AflII	CTTAAG	1 cut(s)	926
AflIII	ACRYGT	2 cut(s)	286, 1166
AgsI	TTSAA	6 cut(s)	104, 112, 357, 666, 1286, 1342
AjnI	CCWGG	2 cut(s)	388, 1207
Alw26I	GTCTC	3 cut(s)	864, 1027, 1180
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	3 cut(s)	177, 252, 1205
ApoI	RAATTY	4 cut(s)	106, 738, 1280, 1342
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
AsuHPI	GGTGA	2 cut(s)	53, 1073
BaeGI	GKGCMC	2 cut(s)	193, 706
BalI	TGGCCA	1 cut(s)	1207
BanI	GGYRCC	2 cut(s)	161, 956
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbsI	GAAGAC	1 cut(s)	1169
BbvCI	CCTCAGC	1 cut(s)	975
BccI	CCATC	5 cut(s)	72, 326, 543, 799, 983
BciT130I	CCWGG	2 cut(s)	390, 1209
BciVI	GTATCC	1 cut(s)	733
BclI	TGATCA	2 cut(s)	498, 814
BcoDI	GTCTC	3 cut(s)	864, 1027, 1180
BfaI	CTAG	2 cut(s)	77, 752
BfmI	CTRYAG	3 cut(s)	645, 759, 846
BfrI	CTTAAG	1 cut(s)	926
BfuAI	ACCTGC	1 cut(s)	1099
BfuI	GTATCC	1 cut(s)	733
BglII	AGATCT	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	390, 1209
BmiI	GGNNCC	3 cut(s)	163, 245, 958
BmrFI	CCNGG	2 cut(s)	390, 1209
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	764, 1263
BmuI	ACTGGG	1 cut(s)	598
BoxI	GACNNNNGTC	1 cut(s)	1019
BpiI	GAAGAC	1 cut(s)	1169
BpmI	CTGGAG	2 cut(s)	651, 912
Bpu10I	CCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	219, 255, 1238
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	6 cut(s)	165, 483, 604, 699, 975, 1076
Bse3DI	GCAATG	1 cut(s)	671
BseBI	CCWGG	2 cut(s)	390, 1209
BseDI	CCNNGG	3 cut(s)	219, 255, 1238
BseGI	GGATG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	3 cut(s)	966, 1020, 1311
BseNI	ACTGG	6 cut(s)	165, 483, 604, 699, 975, 1076
BseRI	GAGGAG	3 cut(s)	42, 815, 927
BseSI	GKGCMC	2 cut(s)	193, 706
BseX3I	CGGCCG	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	614
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	179, 254, 1207
BshNI	GGYRCC	2 cut(s)	161, 956
BsiEI	CGRYCG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	1316
BsmAI	GTCTC	3 cut(s)	864, 1027, 1180
BsmFI	GGGAC	1 cut(s)	1316
BsmI	GAATGC	2 cut(s)	320, 1292
BsnI	GGCC	3 cut(s)	179, 254, 1207
Bsp1286I	GDGCHC	2 cut(s)	193, 706
Bsp143I	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
Bsp19I	CCATGG	2 cut(s)	219, 255
BspACI	CCGC	5 cut(s)	176, 194, 614, 764, 1142
BspANI	GGCC	3 cut(s)	179, 254, 1207
BspCNI	CTCAG	3 cut(s)	967, 1019, 1312
BspFNI	CGCG	1 cut(s)	614
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	3 cut(s)	163, 245, 958
BspMAI	CTGCAG	2 cut(s)	763, 850
BspMI	ACCTGC	1 cut(s)	1099
BspT107I	GGYRCC	2 cut(s)	161, 956
BspTI	CTTAAG	1 cut(s)	926
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	6 cut(s)	165, 483, 604, 699, 975, 1076
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	219, 255, 1238
BssMI	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
BssT1I	CCWWGG	3 cut(s)	219, 255, 1238
Bst2UI	CCWGG	2 cut(s)	390, 1209
Bst4CI	ACNGT	3 cut(s)	38, 425, 1190
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	926
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	4 cut(s)	297, 975, 1006, 1320
BstDSI	CCRYGG	2 cut(s)	219, 255
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	6 cut(s)	239, 264, 501, 562, 817, 1066
BstMAI	GTCTC	3 cut(s)	864, 1027, 1180
BstMBI	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
BstMCI	CGRYCG	1 cut(s)	180
BstNI	CCWGG	2 cut(s)	390, 1209
BstNSI	RCATGY	3 cut(s)	290, 526, 1170
BstPAI	GACNNNNGTC	1 cut(s)	1019
BstSCI	CCNGG	2 cut(s)	388, 1207
BstSFI	CTRYAG	3 cut(s)	645, 759, 846
BstSLI	GKGCMC	2 cut(s)	193, 706
BstUI	CGCG	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	1169
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	179, 254, 1207
BtgI	CCRYGG	2 cut(s)	219, 255
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	4 cut(s)	430, 706, 968, 1069
BveI	ACCTGC	1 cut(s)	1099
Cac8I	GCNNGC	1 cut(s)	612
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	876
Cfr10I	RCCGGY	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	34, 47, 336
CviQI	GTAC	3 cut(s)	34, 47, 336
DdeI	CTNAG	4 cut(s)	297, 975, 1006, 1320
DpnI	GATC	6 cut(s)	238, 263, 500, 561, 816, 1065
DpnII	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
EaeI	YGGCCR	3 cut(s)	177, 252, 1205
EagI	CGGCCG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	177
Eco130I	CCWWGG	3 cut(s)	219, 255, 1238
Eco52I	CGGCCG	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	1200
EcoRII	CCWGG	2 cut(s)	388, 1207
EcoT14I	CCWWGG	3 cut(s)	219, 255, 1238
ErhI	CCWWGG	3 cut(s)	219, 255, 1238
FaqI	GGGAC	1 cut(s)	1316
FauI	CCCGC	2 cut(s)	201, 1135
FauNDI	CATATG	1 cut(s)	1311
FbaI	TGATCA	2 cut(s)	498, 814
FblI	GTMKAC	1 cut(s)	1185
FokI	GGATG	1 cut(s)	453
FspBI	CTAG	2 cut(s)	77, 752
GsuI	CTGGAG	2 cut(s)	651, 912
HaeIII	GGCC	3 cut(s)	179, 254, 1207
HapII	CCGG	1 cut(s)	180
HincII	GTYRAC	2 cut(s)	488, 853
HindII	GTYRAC	2 cut(s)	488, 853
HinfI	GANTC	7 cut(s)	80, 124, 215, 301, 377, 998, 1327
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	53, 1073
Hpy166II	GTNNAC	4 cut(s)	488, 853, 1186, 1317
Hpy188I	TCNGA	6 cut(s)	210, 408, 727, 1044, 1180, 1332
Hpy188III	TCNNGA	5 cut(s)	77, 305, 470, 818, 877
Hpy8I	GTNNAC	4 cut(s)	488, 853, 1186, 1317
Hpy99I	CGWCG	2 cut(s)	124, 214
HpyAV	CCTTC	2 cut(s)	430, 1206
HpyCH4III	ACNGT	3 cut(s)	38, 425, 1190
HpyF3I	CTNAG	4 cut(s)	297, 975, 1006, 1320
Ksp22I	TGATCA	2 cut(s)	498, 814
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
LmnI	GCTCC	5 cut(s)	173, 243, 809, 893, 914
LweI	GCATC	2 cut(s)	764, 1263
MaeI	CTAG	2 cut(s)	77, 752
MaeIII	GTNAC	1 cut(s)	1190
MalI	GATC	6 cut(s)	238, 263, 500, 561, 816, 1065
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
MboII	GAAGA	5 cut(s)	9, 47, 1171, 1174, 1235
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	193, 706
MlsI	TGGCCA	1 cut(s)	1207
MluCI	AATT	5 cut(s)	106, 494, 738, 1280, 1342
MluNI	TGGCCA	1 cut(s)	1207
MlyI	GAGTC	2 cut(s)	224, 310
MmeI	TCCRAC	2 cut(s)	117, 233
Mox20I	TGGCCA	1 cut(s)	1207
MscI	TGGCCA	1 cut(s)	1207
MseI	TTAA	5 cut(s)	26, 554, 852, 884, 927
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	1207
MspA1I	CMGCKG	4 cut(s)	695, 764, 890, 1265
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	390, 1209
MunI	CAATTG	1 cut(s)	494
Mva1269I	GAATGC	2 cut(s)	320, 1292
MvaI	CCWGG	2 cut(s)	390, 1209
MvnI	CGCG	1 cut(s)	614
NcoI	CCATGG	2 cut(s)	219, 255
NdeI	CATATG	1 cut(s)	1311
NdeII	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
NlaIV	GGNNCC	3 cut(s)	163, 245, 958
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	1190
NspI	RCATGY	3 cut(s)	290, 526, 1170
PagI	TCATGA	1 cut(s)	876
PciI	ACATGT	2 cut(s)	286, 1166
PctI	GAATGC	2 cut(s)	320, 1292
PfeI	GAWTC	5 cut(s)	80, 124, 377, 998, 1327
PflFI	GACNNNGTC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	223, 309
PpsI	GAGTC	2 cut(s)	223, 309
PscI	ACATGT	2 cut(s)	286, 1166
PshAI	GACNNNNGTC	1 cut(s)	1019
Psp6I	CCWGG	2 cut(s)	388, 1207
PspGI	CCWGG	2 cut(s)	388, 1207
PspN4I	GGNNCC	3 cut(s)	163, 245, 958
PstI	CTGCAG	2 cut(s)	763, 850
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	214
PvuII	CAGCTG	3 cut(s)	695, 890, 1265
RsaI	GTAC	3 cut(s)	35, 48, 337
RsaNI	GTAC	3 cut(s)	34, 47, 336
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	26, 554, 852, 884, 927
Sau3AI	GATC	6 cut(s)	236, 261, 498, 559, 814, 1063
SchI	GAGTC	2 cut(s)	224, 310
ScrFI	CCNGG	2 cut(s)	390, 1209
SduI	GDGCHC	2 cut(s)	193, 706
SfaNI	GCATC	2 cut(s)	764, 1263
SfcI	CTRYAG	3 cut(s)	645, 759, 846
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	305, 926
SmoI	CTYRAG	2 cut(s)	305, 926
Sse9I	AATT	5 cut(s)	106, 494, 738, 1280, 1342
SsiI	CCGC	5 cut(s)	176, 194, 614, 764, 1142
SspMI	CTAG	2 cut(s)	77, 752
StyD4I	CCNGG	2 cut(s)	388, 1207
StyI	CCWWGG	3 cut(s)	219, 255, 1238
TaaI	ACNGT	3 cut(s)	38, 425, 1190
TaqI	TCGA	4 cut(s)	119, 127, 743, 1089
TasI	AATT	5 cut(s)	106, 494, 738, 1280, 1342
TauI	GCSGC	3 cut(s)	179, 617, 767
TfiI	GAWTC	5 cut(s)	80, 124, 377, 998, 1327
Tru1I	TTAA	5 cut(s)	26, 554, 852, 884, 927
Tru9I	TTAA	5 cut(s)	26, 554, 852, 884, 927
TscAI	CASTG	4 cut(s)	430, 706, 975, 1076
TseFI	GTSAC	1 cut(s)	1190
Tsp45I	GTSAC	1 cut(s)	1190
TspDTI	ATGAA	6 cut(s)	47, 444, 449, 455, 1139, 1336
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	4 cut(s)	430, 706, 975, 1076
Tth111I	GACNNNGTC	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	926
XapI	RAATTY	4 cut(s)	106, 738, 1280, 1342
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	3 cut(s)	290, 526, 1170
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 967
XmiI	GTMKAC	1 cut(s)	1185
XspI	CTAG	2 cut(s)	77, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.