Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Forward (+)

62930964 .. 62933949

Gene Structure 2986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG459600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGGAAACAAAGTGAAAACAAACCAGCTTTACCAGCCGAGCTTGAAAATGAGCTCTTGTAGTTTGAAATGCTCGACGAATCGACATGGGTTGGAGAACATAGACGAAAATGGTGGCACCAGTATTGGGGCGGAGGGTTTATGTGCCCCGCCACCCGAAACTCCGACGGAGTCCATGGAGTTTCTGGCGAGATCATGGAGCCTCTCGGCCATGGAGATCTCCAAAGCTCTTTCCCACTCACATGTTGCTTCTAGGAGTCTTGAGAATAAGTCAGCATTCTCTTATGATGGTATTGCTGAAACTCGGCATTCAAGTTCCATGCGTTTGAGCGAATCATCTCTGCCTGGTGGAGTTAGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCATGCACTTCATCCAGAGTTCCTTTCCAGTCAACAACAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGTAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAAGAAATGAGAAGCCAAAATGCCCAGTTGCACGCGGCAGTTTCTGTGGCTGGAGTTGCTGCTTCTGTAGCAGCACTCGCGGCTTCAACTGCATTGCCTGAAACTGAAACATCAGCTGCCAGTGCCCGCCACAAAGCAGCAGTATCCGAGAGGACTGAAATTTCGACTGCACTAGCATCTGCAGCGGCTCTGGTAGCTTCACGCTGCATCGAGATTGCAGAGGAGATGGGAGCTGATCACGACCATATTCTATCAGTTGTCAGTTCTGCAGTTAACGTGAGGACTAATGGAGACATCATGACCTTAACAGCTGGAGCTGCCACAGCTTTACGAGGAGCTGCTACACTTAAGGCAAGGCTACAAAAGGAGTATGGAGGCACCACTTTTGCACTGGCTGAGGAAAAATGTGATGGAAAAGAATCAAACTCAGCATTGAACTTTGTCTCAAAAGGAGGGGAACTTCTGAAACGCACAAGGAAAGGTGATCTCCACTGGAAACACGTTTCTTTCAACACCAACTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAACACATGGCGGGAACATTTACAAAGAAGAAGAAATGTATAGTCTCTGAAGTCTACTGTGACATAGCAGCGTGGCCAGGAAGGGAGAGGGAAGATTGCAGCAAACCAAGGGCATACTTTGGCATCAAAACAGCTGACAGGACAATAGAATTTGAATGCAGAAGTAAAAGGGACAAGCATATGTGGACTGAGGGGATTCAGAATATGTTGAATTTCATACCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

437

Amino Acids

47.5

Weight (kDa)

9.14

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	52 - 306	2.8e-88	Auxin canalisation
PH_2	PF08458	331 - 433	5.5e-43	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1054
AccB1I	GGYRCC	2 cut(s)	116, 911
AccI	GTMKAC	1 cut(s)	1140
AccII	CGCG	2 cut(s)	569, 614
AciI	CCGC	7 cut(s)	131, 149, 569, 614, 661, 719, 1097
AcoI	YGGCCR	2 cut(s)	207, 1160
AcsI	RAATTY	3 cut(s)	693, 1235, 1297
AcuI	CTGAAG	1 cut(s)	1155
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflII	CTTAAG	1 cut(s)	881
AflIII	ACRYGT	2 cut(s)	241, 1033
AgsI	TTSAA	8 cut(s)	46, 67, 312, 621, 970, 1045, 1241, 1297
AjnI	CCWGG	2 cut(s)	343, 1162
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	3 cut(s)	819, 982, 1135
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	2 cut(s)	207, 1160
ApoI	RAATTY	3 cut(s)	693, 1235, 1297
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
AsuHPI	GGTGA	1 cut(s)	1028
BaeGI	GKGCMC	2 cut(s)	148, 661
BalI	TGGCCA	1 cut(s)	1162
BanI	GGYRCC	2 cut(s)	116, 911
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BbvCI	CCTCAGC	1 cut(s)	930
BccI	CCATC	4 cut(s)	281, 498, 754, 938
BciT130I	CCWGG	2 cut(s)	345, 1164
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	2 cut(s)	453, 769
BcoDI	GTCTC	3 cut(s)	819, 982, 1135
BfaI	CTAG	2 cut(s)	252, 707
BfmI	CTRYAG	3 cut(s)	600, 714, 801
BfrI	CTTAAG	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	1054
BfuI	GTATCC	1 cut(s)	688
BglII	AGATCT	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	345, 1164
BmiI	GGNNCC	3 cut(s)	118, 200, 913
BmrFI	CCNGG	2 cut(s)	345, 1164
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	3 cut(s)	719, 750, 1218
BmuI	ACTGGG	1 cut(s)	553
BpmI	CTGGAG	2 cut(s)	606, 867
Bpu10I	CCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	174, 210, 1193
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	6 cut(s)	120, 438, 559, 654, 930, 1031
Bse3DI	GCAATG	1 cut(s)	626
BseBI	CCWGG	2 cut(s)	345, 1164
BseDI	CCNNGG	3 cut(s)	174, 210, 1193
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	3 cut(s)	921, 975, 1266
BseNI	ACTGG	6 cut(s)	120, 438, 559, 654, 930, 1031
BseRI	GAGGAG	2 cut(s)	770, 882
BseSI	GKGCMC	2 cut(s)	148, 661
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	569, 614
BshFI	GGCC	2 cut(s)	209, 1162
BshNI	GGYRCC	2 cut(s)	116, 911
BsiHKAI	GWGCWC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	1271
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	3 cut(s)	819, 982, 1135
BsmFI	GGGAC	1 cut(s)	1271
BsmI	GAATGC	3 cut(s)	275, 307, 1247
BsnI	GGCC	2 cut(s)	209, 1162
Bsp1286I	GDGCHC	3 cut(s)	56, 148, 661
Bsp143I	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
Bsp19I	CCATGG	2 cut(s)	174, 210
BspACI	CCGC	7 cut(s)	131, 149, 569, 614, 661, 719, 1097
BspANI	GGCC	2 cut(s)	209, 1162
BspCNI	CTCAG	3 cut(s)	922, 974, 1267
BspFNI	CGCG	2 cut(s)	569, 614
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	118, 200, 913
BspMAI	CTGCAG	2 cut(s)	718, 805
BspMI	ACCTGC	1 cut(s)	1054
BspT107I	GGYRCC	2 cut(s)	116, 911
BspTI	CTTAAG	1 cut(s)	881
BsrDI	GCAATG	1 cut(s)	626
BsrI	ACTGG	6 cut(s)	120, 438, 559, 654, 930, 1031
BssECI	CCNNGG	3 cut(s)	174, 210, 1193
BssMI	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
BssT1I	CCWWGG	3 cut(s)	174, 210, 1193
Bst2UI	CCWGG	2 cut(s)	345, 1164
Bst4CI	ACNGT	2 cut(s)	380, 1145
BstAFI	CTTAAG	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	567, 661
BstDEI	CTNAG	3 cut(s)	930, 961, 1275
BstDSI	CCRYGG	2 cut(s)	174, 210
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	569, 614
BstKTI	GATC	6 cut(s)	194, 219, 456, 517, 772, 1021
BstMAI	GTCTC	3 cut(s)	819, 982, 1135
BstMBI	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
BstNI	CCWGG	2 cut(s)	345, 1164
BstNSI	RCATGY	2 cut(s)	245, 481
BstSCI	CCNGG	2 cut(s)	343, 1162
BstSFI	CTRYAG	3 cut(s)	600, 714, 801
BstSLI	GKGCMC	2 cut(s)	148, 661
BstUI	CGCG	2 cut(s)	569, 614
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	209, 1162
BtgI	CCRYGG	2 cut(s)	174, 210
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	4 cut(s)	385, 661, 923, 1024
BveI	ACCTGC	1 cut(s)	1054
Cac8I	GCNNGC	2 cut(s)	567, 661
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	831
DdeI	CTNAG	3 cut(s)	930, 961, 1275
DpnI	GATC	6 cut(s)	193, 218, 455, 516, 771, 1020
DpnII	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
EaeI	YGGCCR	2 cut(s)	207, 1160
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	3 cut(s)	174, 210, 1193
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	1155
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	343, 1162
EcoT14I	CCWWGG	3 cut(s)	174, 210, 1193
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	3 cut(s)	174, 210, 1193
FaqI	GGGAC	1 cut(s)	1271
FauI	CCCGC	3 cut(s)	156, 668, 1090
FauNDI	CATATG	1 cut(s)	1266
FbaI	TGATCA	2 cut(s)	453, 769
FblI	GTMKAC	1 cut(s)	1140
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	252, 707
GsuI	CTGGAG	2 cut(s)	606, 867
HaeIII	GGCC	2 cut(s)	209, 1162
HincII	GTYRAC	2 cut(s)	443, 808
HindII	GTYRAC	2 cut(s)	443, 808
HinfI	GANTC	6 cut(s)	79, 170, 256, 332, 953, 1282
HpaI	GTTAAC	1 cut(s)	808
HphI	GGTGA	1 cut(s)	1028
Hpy166II	GTNNAC	4 cut(s)	443, 808, 1141, 1272
Hpy188I	TCNGA	6 cut(s)	165, 363, 682, 999, 1135, 1287
Hpy188III	TCNNGA	5 cut(s)	260, 425, 745, 773, 832
Hpy8I	GTNNAC	4 cut(s)	443, 808, 1141, 1272
Hpy99I	CGWCG	2 cut(s)	79, 169
HpyAV	CCTTC	2 cut(s)	385, 1161
HpyCH4III	ACNGT	2 cut(s)	380, 1145
HpyCH4IV	ACGT	2 cut(s)	810, 1035
HpyF3I	CTNAG	3 cut(s)	930, 961, 1275
HpySE526I	ACGT	2 cut(s)	810, 1035
Ksp22I	TGATCA	2 cut(s)	453, 769
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
LmnI	GCTCC	4 cut(s)	198, 764, 848, 869
LweI	GCATC	3 cut(s)	719, 750, 1218
MaeI	CTAG	2 cut(s)	252, 707
MaeII	ACGT	2 cut(s)	810, 1035
MaeIII	GTNAC	1 cut(s)	1145
MalI	GATC	6 cut(s)	193, 218, 455, 516, 771, 1020
MboI	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
MboII	GAAGA	3 cut(s)	1126, 1129, 1190
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	3 cut(s)	56, 148, 661
MlsI	TGGCCA	1 cut(s)	1162
MluCI	AATT	4 cut(s)	449, 693, 1235, 1297
MluNI	TGGCCA	1 cut(s)	1162
MlyI	GAGTC	2 cut(s)	179, 265
MmeI	TCCRAC	2 cut(s)	72, 188
Mox20I	TGGCCA	1 cut(s)	1162
MscI	TGGCCA	1 cut(s)	1162
MseI	TTAA	4 cut(s)	509, 807, 839, 882
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	1162
MspA1I	CMGCKG	4 cut(s)	650, 719, 845, 1220
MspCI	CTTAAG	1 cut(s)	881
MspR9I	CCNGG	2 cut(s)	345, 1164
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	3 cut(s)	275, 307, 1247
MvaI	CCWGG	2 cut(s)	345, 1164
MvnI	CGCG	2 cut(s)	569, 614
NcoI	CCATGG	2 cut(s)	174, 210
NdeI	CATATG	1 cut(s)	1266
NdeII	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
NlaIV	GGNNCC	3 cut(s)	118, 200, 913
NmeAIII	GCCGAG	3 cut(s)	63, 185, 283
NmuCI	GTSAC	1 cut(s)	1145
NspI	RCATGY	2 cut(s)	245, 481
PagI	TCATGA	1 cut(s)	831
PciI	ACATGT	1 cut(s)	241
PctI	GAATGC	3 cut(s)	275, 307, 1247
PfeI	GAWTC	4 cut(s)	79, 332, 953, 1282
PflFI	GACNNNGTC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	178, 264
PpsI	GAGTC	2 cut(s)	178, 264
PscI	ACATGT	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	343, 1162
PspGI	CCWGG	2 cut(s)	343, 1162
PspN4I	GGNNCC	3 cut(s)	118, 200, 913
PstI	CTGCAG	2 cut(s)	718, 805
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	216
PsyI	GACNNNGTC	1 cut(s)	169
PvuII	CAGCTG	3 cut(s)	650, 845, 1220
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	509, 807, 839, 882
Sau3AI	GATC	6 cut(s)	191, 216, 453, 514, 769, 1018
SchI	GAGTC	2 cut(s)	179, 265
ScrFI	CCNGG	2 cut(s)	345, 1164
SduI	GDGCHC	3 cut(s)	56, 148, 661
SfaNI	GCATC	3 cut(s)	719, 750, 1218
SfcI	CTRYAG	3 cut(s)	600, 714, 801
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	260, 881
SmoI	CTYRAG	2 cut(s)	260, 881
Sse9I	AATT	4 cut(s)	449, 693, 1235, 1297
SsiI	CCGC	7 cut(s)	131, 149, 569, 614, 661, 719, 1097
SspMI	CTAG	2 cut(s)	252, 707
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	343, 1162
StyI	CCWWGG	3 cut(s)	174, 210, 1193
TaaI	ACNGT	2 cut(s)	380, 1145
TaiI	ACGT	2 cut(s)	813, 1038
TaqI	TCGA	4 cut(s)	74, 82, 698, 744
TasI	AATT	4 cut(s)	449, 693, 1235, 1297
TauI	GCSGC	3 cut(s)	572, 617, 722
TfiI	GAWTC	4 cut(s)	79, 332, 953, 1282
Tru1I	TTAA	4 cut(s)	509, 807, 839, 882
Tru9I	TTAA	4 cut(s)	509, 807, 839, 882
TscAI	CASTG	4 cut(s)	385, 661, 930, 1031
TseFI	GTSAC	1 cut(s)	1145
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	5 cut(s)	399, 404, 410, 1094, 1291
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	4 cut(s)	385, 661, 930, 1031
Tth111I	GACNNNGTC	1 cut(s)	169
Vha464I	CTTAAG	1 cut(s)	881
XapI	RAATTY	3 cut(s)	693, 1235, 1297
XceI	RCATGY	2 cut(s)	245, 481
XcmI	CCANNNNNNNNNTGG	2 cut(s)	181, 922
XmiI	GTMKAC	1 cut(s)	1140
XspI	CTAG	2 cut(s)	252, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.