Prupe.1G449700_v2.0.a1

Plant pleckstrin homology-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007321
Physical Location & Seq
Reverse (-)
37932544 .. 37935825
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G449700.3

Sequence Viewer

Length: 1488 bp
ATGCAACTCACTTTTGCAACCTTGTTAAATAGGCACTGTATTGTACCCTTCCTCTTCAATCTTCATCTCCTCATTCCTCCTTTCCACTATTGGGCTTCAAAAAAAGTAAGCAAGAACCCAAAAAAGAAGAAAACTAGACTTATTTTTTTGGCTTGGCTCTTAACTCTTAACTCTAACTCTCTGAGTGTGTATGCGTGTGTGTTTTTTCATGGTGTTTTAGTGAGCTCTTGCGGTTTGAAGTGCCCAACAACACAGGGGATGCATGGGGGGCTAGAGGACATAGACGAAAATGGTGGCATGAGTTGGGCAGGCGAGGCTTGTGCCCCACCACCGGAAACTCCAACGGAGTCCATGGAGTTTCTGGCCAGATCATGGAGCCTCTCTGCCATGGAGCTCTCCAAAGCTCTTTCCCACACTCATGTTAATGTTGCTTCTAAAAATCTTGACAACAACAAGTCTGCCTTCACTTCTTCTGATGGTGTTGGTTCACATGATACAGTTTCCATGCGTTTAGGAGAGCCTCCAAGTGGGGGTAGCCCTCCAATTTCACCCAGAGACAGTGAAGAAATGAAGGAGTTATTTTTACTGCATCAAGCACTCCACCCAGATTTCCTTTCCACTCAACAGCAATTGCTCAATAATGGGCTATACAAGAGCATTTTGCGAGGGAAAACAATGGGAAGGTGGTTGAAAGATCAAAAGGAGAGGAAGAAGCAGGAACTCAGAACCCAAAATGCTCAGTTGCATGCAGCTGTTTCTGTGGCTGGGGTTGCTGCTGCTGTAGCAGCAGTTGCAGCTTCAACTGCATTGCCTGAAACTTCAGCGGCCCACCAGAAAGCGCCACTAATATCGGAGCTGAGGACCGAAACATCAGCTGCACTAGCATCTGCGGCTGCTCTTGTAGCGTCGCGTTGCATTGAGATTGCGGAGGAAATGGGAGCTGATCATGACCACATTCTATCAGTTGTCAACTCTGCAGTAAATGCAAGGACGAATGGAGATATCATGACCTTAACTGCTGGAGCAGCTACAGCTTTACGGGGAGCTGCTACACTTAAGGTAAGGCTGCAAAAGGAGTACGGAGGCACGAACTTGGTTCTGGCTGACGAAAAACTTGAAGGAAAAGAATCAAATTCAGCACTGAACTTTGTCACTAGAGGAGGTGAACTCCTCAAACGTACAAGGAAAGGTGATCTCCACTGGAAGCGAGTTTCTTTCAACATTAATTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAGCACATGGCGGGAACATTTACGAAAAAGAAGAAATGTGTAGTCTCTGGAGTCTACTGTGACATCCCAGCCTGGCCGGGAAGGGAGAGGGAAGATGGAAGCAAACCAAGGGCATACTTTGGGATAAAAACAGCTGAAAGGACAATAGAATTTGAATGCAAGAGTAAAGGTGACAAACATATGTGGACTGAGGGGATCCACCATATGTTGAATTTTATGCCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

496

Amino Acids

53.98

Weight (kDa)

9.28

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1228
AccB7I CCANNNNNTGG 1 cut(s) 372
AccI GTMKAC 1 cut(s) 1314
AccII CGCG 1 cut(s) 910
AciI CCGC 5 cut(s) 231, 824, 890, 926, 1271
AclWI GGATC 2 cut(s) 1450, 1463
AcoI YGGCCR 2 cut(s) 363, 1334
AcsI RAATTY 3 cut(s) 1132, 1409, 1471
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 3 cut(s) 45, 1079, 1180
AfiI CCNNNNNNNGG 5 cut(s) 91, 331, 372, 527, 530
AflII CTTAAG 1 cut(s) 1055
AjnI CCWGG 1 cut(s) 1331
Alw21I GWGCWC 2 cut(s) 227, 396
Alw26I GTCTC 2 cut(s) 549, 1309
AlwI GGATC 2 cut(s) 1450, 1463
AoxI GGCC 3 cut(s) 363, 825, 1334
ApoI RAATTY 3 cut(s) 1132, 1409, 1471
AseI ATTAAT 1 cut(s) 1224
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 2 cut(s) 826, 861
AsuC2I CCSGG 1 cut(s) 1338
AsuHPI GGTGA 4 cut(s) 540, 1175, 1202, 1442
AvaII GGWCC 1 cut(s) 861
BaeGI GKGCMC 2 cut(s) 245, 325
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 1455
BanII GRGCYC 2 cut(s) 227, 396
Bbv12I GWGCWC 2 cut(s) 227, 396
BbvCI CCTCAGC 1 cut(s) 857
BccI CCATC 2 cut(s) 470, 1349
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 1333
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 1 cut(s) 1338
BcoDI GTCTC 2 cut(s) 549, 1309
BfaI CTAG 4 cut(s) 135, 272, 881, 1155
BfmI CTRYAG 3 cut(s) 780, 975, 1029
BfoI RGCGCY 1 cut(s) 842
BfrI CTTAAG 1 cut(s) 1055
BfuAI ACCTGC 1 cut(s) 1228
Bme1390I CCNGG 2 cut(s) 1333, 1338
Bme18I GGWCC 1 cut(s) 861
BmgT120I GGNCC 2 cut(s) 826, 861
BmiI GGNNCC 2 cut(s) 377, 1457
BmrFI CCNGG 2 cut(s) 1333, 1338
BmsI GCATC 3 cut(s) 249, 598, 893
BplI GAGNNNNNCTC 2 cut(s) 1152, 1184
BpmI CTGGAG 2 cut(s) 1041, 1329
Bpu10I CCTNAGC 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 1338
BsaJI CCNNGG 3 cut(s) 351, 387, 1367
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 331, 372, 527, 530
Bse1I ACTGG 1 cut(s) 1205
Bse3DI GCAATG 1 cut(s) 806
BseBI CCWGG 1 cut(s) 1333
BseDI CCNNGG 3 cut(s) 351, 387, 1367
BseGI GGATG 2 cut(s) 264, 1323
BseLI CCNNNNNNNGG 5 cut(s) 91, 331, 372, 527, 530
BseMI GCAATG 1 cut(s) 806
BseMII CTCAG 5 cut(s) 173, 736, 752, 848, 1440
BseNI ACTGG 1 cut(s) 1205
BseRI GAGGAG 3 cut(s) 59, 1160, 1173
BseSI GKGCMC 2 cut(s) 245, 325
BseYI CCCAGC 2 cut(s) 764, 1327
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 3 cut(s) 365, 827, 1336
BsiHKAI GWGCWC 2 cut(s) 227, 396
BsiSI CCGG 2 cut(s) 332, 1337
BslI CCNNNNNNNGG 5 cut(s) 91, 331, 372, 527, 530
BsmAI GTCTC 2 cut(s) 549, 1309
BsmI GAATGC 1 cut(s) 1421
BsnI GGCC 3 cut(s) 365, 827, 1336
Bsp1286I GDGCHC 4 cut(s) 227, 245, 325, 396
Bsp143I GATC 5 cut(s) 368, 694, 943, 1192, 1455
Bsp19I CCATGG 2 cut(s) 351, 387
BspACI CCGC 5 cut(s) 231, 824, 890, 926, 1271
BspANI GGCC 3 cut(s) 365, 827, 1336
BspCNI CTCAG 5 cut(s) 174, 735, 751, 849, 1441
BspFNI CGCG 1 cut(s) 910
BspHI TCATGA 2 cut(s) 946, 1005
BspLI GGNNCC 2 cut(s) 377, 1457
BspMAI CTGCAG 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 1228
BspPI GGATC 2 cut(s) 1450, 1463
BspTI CTTAAG 1 cut(s) 1055
BsrDI GCAATG 1 cut(s) 806
BsrI ACTGG 1 cut(s) 1205
BssECI CCNNGG 3 cut(s) 351, 387, 1367
BssMI GATC 5 cut(s) 368, 694, 943, 1192, 1455
BssT1I CCWWGG 3 cut(s) 351, 387, 1367
Bst2UI CCWGG 1 cut(s) 1333
Bst4CI ACNGT 4 cut(s) 38, 499, 560, 1319
Bst6I CTCTTC 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 1055
BstAPI GCANNNNNTGC 2 cut(s) 791, 983
BstC8I GCNNGC 3 cut(s) 310, 747, 1262
BstDEI CTNAG 5 cut(s) 182, 722, 738, 857, 1449
BstDSI CCRYGG 2 cut(s) 351, 387
BstF5I GGATG 2 cut(s) 264, 1323
BstFNI CGCG 1 cut(s) 910
BstH2I RGCGCY 1 cut(s) 842
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 5 cut(s) 371, 697, 946, 1195, 1458
BstMAI GTCTC 2 cut(s) 549, 1309
BstMBI GATC 5 cut(s) 368, 694, 943, 1192, 1455
BstNI CCWGG 1 cut(s) 1333
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 1331, 1336
BstSFI CTRYAG 3 cut(s) 780, 975, 1029
BstSLI GKGCMC 2 cut(s) 245, 325
BstUI CGCG 1 cut(s) 910
BstX2I RGATCY 1 cut(s) 1455
BstYI RGATCY 1 cut(s) 1455
BsuRI GGCC 3 cut(s) 365, 827, 1336
BtgI CCRYGG 2 cut(s) 351, 387
BtsCI GGATG 2 cut(s) 264, 1323
BtsIMutI CAGTG 4 cut(s) 34, 565, 1139, 1198
BveI ACCTGC 1 cut(s) 1228
Cac8I GCNNGC 3 cut(s) 310, 747, 1262
CciI TCATGA 2 cut(s) 946, 1005
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 826, 861
CseI GACGC 1 cut(s) 894
Csp6I GTAC 3 cut(s) 44, 1078, 1179
CviQI GTAC 3 cut(s) 44, 1078, 1179
DdeI CTNAG 5 cut(s) 182, 722, 738, 857, 1449
DpnI GATC 5 cut(s) 370, 696, 945, 1194, 1457
DpnII GATC 5 cut(s) 368, 694, 943, 1192, 1455
EaeI YGGCCR 2 cut(s) 363, 1334
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 225, 394
Eco130I CCWWGG 3 cut(s) 351, 387, 1367
Eco24I GRGCYC 2 cut(s) 227, 396
Eco32I GATATC 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 861
Eco53kI GAGCTC 2 cut(s) 225, 394
Eco57I CTGAAG 1 cut(s) 804
EcoICRI GAGCTC 2 cut(s) 225, 394
EcoRII CCWGG 1 cut(s) 1331
EcoRV GATATC 1 cut(s) 1003
EcoT14I CCWWGG 3 cut(s) 351, 387, 1367
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 2 cut(s) 227, 396
ErhI CCWWGG 3 cut(s) 351, 387, 1367
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FauI CCCGC 1 cut(s) 1264
FauNDI CATATG 2 cut(s) 1440, 1464
FbaI TGATCA 1 cut(s) 943
FblI GTMKAC 1 cut(s) 1314
FokI GGATG 2 cut(s) 271, 1310
FriOI GRGCYC 2 cut(s) 227, 396
FspBI CTAG 4 cut(s) 135, 272, 881, 1155
GlaI GCGC 1 cut(s) 840
GsaI CCCAGC 2 cut(s) 768, 1331
GsuI CTGGAG 2 cut(s) 1041, 1329
HaeII RGCGCY 1 cut(s) 842
HaeIII GGCC 3 cut(s) 365, 827, 1336
HapII CCGG 2 cut(s) 332, 1337
HgaI GACGC 1 cut(s) 894
HhaI GCGC 1 cut(s) 841
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HinfI GANTC 3 cut(s) 347, 1127, 1311
HpaII CCGG 2 cut(s) 332, 1337
HphI GGTGA 4 cut(s) 540, 1175, 1202, 1442
Hpy166II GTNNAC 5 cut(s) 488, 970, 1166, 1315, 1446
Hpy188I TCNGA 4 cut(s) 183, 475, 725, 853
Hpy188III TCNNGA 4 cut(s) 443, 947, 1006, 1308
Hpy8I GTNNAC 5 cut(s) 488, 970, 1166, 1315, 1446
Hpy99I CGWCG 1 cut(s) 910
HpyAV CCTTC 6 cut(s) 58, 472, 565, 675, 1112, 1335
HpyCH4III ACNGT 4 cut(s) 38, 499, 560, 1319
HpyCH4IV ACGT 1 cut(s) 1177
HpyF3I CTNAG 5 cut(s) 182, 722, 738, 857, 1449
HpySE526I ACGT 1 cut(s) 1177
HspAI GCGC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 5 cut(s) 368, 694, 943, 1192, 1455
LmnI GCTCC 6 cut(s) 375, 391, 853, 938, 1022, 1043
LweI GCATC 3 cut(s) 249, 598, 893
MaeI CTAG 4 cut(s) 135, 272, 881, 1155
MaeII ACGT 1 cut(s) 1177
MaeIII GTNAC 3 cut(s) 1150, 1319, 1430
MalI GATC 5 cut(s) 370, 696, 945, 1194, 1457
MboI GATC 5 cut(s) 368, 694, 943, 1192, 1455
MboII GAAGA 8 cut(s) 46, 53, 139, 462, 575, 721, 1303, 1364
MfeI CAATTG 1 cut(s) 629
MflI RGATCY 1 cut(s) 1455
MhlI GDGCHC 4 cut(s) 227, 245, 325, 396
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 6 cut(s) 543, 629, 1132, 1225, 1409, 1471
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 2 cut(s) 356, 1320
MmeI TCCRAC 1 cut(s) 365
Mox20I TGGCCA 1 cut(s) 365
Mph1103I ATGCAT 1 cut(s) 264
MscI TGGCCA 1 cut(s) 365
MseI TTAA 7 cut(s) 26, 161, 168, 423, 1013, 1056, 1224
MslI CAYNNNNRTG 2 cut(s) 417, 423
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 4 cut(s) 752, 824, 875, 1394
MspCI CTTAAG 1 cut(s) 1055
MspI CCGG 2 cut(s) 332, 1337
MspR9I CCNGG 2 cut(s) 1333, 1338
MunI CAATTG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 1421
MvaI CCWGG 1 cut(s) 1333
MvnI CGCG 1 cut(s) 910
NciI CCSGG 1 cut(s) 1338
NcoI CCATGG 2 cut(s) 351, 387
NdeI CATATG 2 cut(s) 1440, 1464
NdeII GATC 5 cut(s) 368, 694, 943, 1192, 1455
NlaIV GGNNCC 2 cut(s) 377, 1457
NmuCI GTSAC 3 cut(s) 1150, 1319, 1430
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 749
PaeI GCATGC 1 cut(s) 749
PagI TCATGA 2 cut(s) 946, 1005
PctI GAATGC 1 cut(s) 1421
PfeI GAWTC 1 cut(s) 1127
PflMI CCANNNNNTGG 1 cut(s) 372
PleI GAGTC 2 cut(s) 355, 1319
PpsI GAGTC 2 cut(s) 355, 1319
PshBI ATTAAT 1 cut(s) 1224
Psp124BI GAGCTC 2 cut(s) 227, 396
Psp6I CCWGG 1 cut(s) 1331
PspFI CCCAGC 2 cut(s) 764, 1327
PspGI CCWGG 1 cut(s) 1331
PspN4I GGNNCC 2 cut(s) 377, 1457
PspPI GGNCC 2 cut(s) 826, 861
PstI CTGCAG 1 cut(s) 979
PsuI RGATCY 1 cut(s) 1455
PvuII CAGCTG 3 cut(s) 752, 875, 1394
RsaI GTAC 3 cut(s) 45, 1079, 1180
RsaNI GTAC 3 cut(s) 44, 1078, 1179
RseI CAYNNNNRTG 2 cut(s) 417, 423
SacI GAGCTC 2 cut(s) 227, 396
SaqAI TTAA 7 cut(s) 26, 161, 168, 423, 1013, 1056, 1224
Sau3AI GATC 5 cut(s) 368, 694, 943, 1192, 1455
Sau96I GGNCC 2 cut(s) 826, 861
SchI GAGTC 2 cut(s) 356, 1320
ScrFI CCNGG 2 cut(s) 1333, 1338
SduI GDGCHC 4 cut(s) 227, 245, 325, 396
SfaNI GCATC 3 cut(s) 249, 598, 893
SfcI CTRYAG 3 cut(s) 780, 975, 1029
SinI GGWCC 1 cut(s) 861
SmiMI CAYNNNNRTG 2 cut(s) 417, 423
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SphI GCATGC 1 cut(s) 749
Sse9I AATT 6 cut(s) 543, 629, 1132, 1225, 1409, 1471
SsiI CCGC 5 cut(s) 231, 824, 890, 926, 1271
SspMI CTAG 4 cut(s) 135, 272, 881, 1155
SstI GAGCTC 2 cut(s) 227, 396
StyD4I CCNGG 2 cut(s) 1331, 1336
StyI CCWWGG 3 cut(s) 351, 387, 1367
TaaI ACNGT 4 cut(s) 38, 499, 560, 1319
TaiI ACGT 1 cut(s) 1180
TaqII GACCGA 1 cut(s) 878
TasI AATT 6 cut(s) 543, 629, 1132, 1225, 1409, 1471
TauI GCSGC 2 cut(s) 827, 893
TfiI GAWTC 1 cut(s) 1127
Tru1I TTAA 7 cut(s) 26, 161, 168, 423, 1013, 1056, 1224
Tru9I TTAA 7 cut(s) 26, 161, 168, 423, 1013, 1056, 1224
TscAI CASTG 4 cut(s) 41, 565, 1146, 1205
TseFI GTSAC 3 cut(s) 1150, 1319, 1430
Tsp45I GTSAC 3 cut(s) 1150, 1319, 1430
TspDTI ATGAA 4 cut(s) 53, 197, 584, 1268
TspGWI ACGGA 2 cut(s) 359, 1095
TspRI CASTG 4 cut(s) 41, 565, 1146, 1205
Van91I CCANNNNNTGG 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 861
VspI ATTAAT 1 cut(s) 1224
XapI RAATTY 3 cut(s) 1132, 1409, 1471
XceI RCATGY 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 1314
XspI CTAG 4 cut(s) 135, 272, 881, 1155
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.