Rh6BG442000

Plant pleckstrin homology-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007321
Physical Location & Seq
Reverse (-)
65976413 .. 65978165
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG442000.1

Sequence Viewer

Length: 909 bp
ATGGAGTTTCTGGCGAGATCATGGAGCCTCTCGGCCATGGAGATCTCCAAAGCTCTTTCCCACTCACATGTTGCTTCTAGGAGTCTTGAGAATAAGTCAGCATTCTCTTATGATGGTATTGCTGAAACTCGCCATTCAAGTTCCATGCGTTTGAGCGAATCATCTCTGCCTGGTGGAGTTGGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCATGCACTTCATCCAGAGCTCCTTTCCAGTCAACAACAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGTAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAAGAAATGAGAAGCCAAAATGCCCAGTTGCACGCGGCAGTTTCTGTGGCTGGAGTTGCTGCTGCTGTAGCAGCACTCGCGGCTTCAACTGCATTGCCTGAAACTGAAACATCAGCTGCCAGTGCCCACCACAAAGCAGCAGTATCCGAGAGGACTGAAATTTCGACTGCACTAGCATCTGCAGCGGCTCTGGTAGCTTCACGCTGCATCGAGATTGCAGAGGAGATGGGAGCTGATCACGACCATATTCTATCAGTTGTCAGTTCTGCAGTTAACGTGAGGACTAATGGAGACATCATGACCTTAACAGCTGGAGCTGCCACAGCTTTACGAGGAGCTGCTACACTTAAGGCAAGGCTACAAAAGGAGTATGGAGGCACCACTTTTGCACTGGCTGAGGAAAAATGTGATGGAAAAGAATCAAACTCAGCATTGAACTTTGTCTCAAAAGGAGGGGAACTTCTGAAACGCACAAGGAAAGGTGATCTCCACTGGAAACACGTTTCTTTCAACACCAACTCAAATGGGCAGGCCTTGAACACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

302

Amino Acids

32.3

Weight (kDa)

9.16

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 1 - 248 5.4e-83 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 737
AccII CGCG 2 cut(s) 395, 440
AciI CCGC 3 cut(s) 395, 440, 545
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 519
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 2 cut(s) 67, 859
AgsI TTSAA 5 cut(s) 138, 447, 796, 871, 898
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 9 cut(s) 53, 256, 476, 557, 593, 671, 677, 686, 698
AluI AGCT 9 cut(s) 53, 256, 476, 557, 593, 671, 677, 686, 698
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 645, 808
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 3 cut(s) 33, 181, 891
ApeKI GCWGC 9 cut(s) 419, 422, 431, 476, 497, 542, 564, 677, 698
ApoI RAATTY 1 cut(s) 519
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 854
BaeGI GKGCMC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 756
BbvI GCAGC 9 cut(s) 406, 409, 443, 463, 509, 551, 554, 664, 685
BccI CCATC 4 cut(s) 107, 324, 580, 764
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 514
BclI TGATCA 2 cut(s) 279, 595
BcoDI GTCTC 2 cut(s) 645, 808
BfaI CTAG 2 cut(s) 78, 533
BfmI CTRYAG 3 cut(s) 426, 540, 627
BfrI CTTAAG 1 cut(s) 707
BfuI GTATCC 1 cut(s) 514
BglII AGATCT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 26, 739
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 545, 576
BmuI ACTGGG 1 cut(s) 379
BpmI CTGGAG 2 cut(s) 432, 693
Bpu10I CCTNAGC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 5 cut(s) 264, 385, 480, 756, 857
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 747, 801
BseNI ACTGG 5 cut(s) 264, 385, 480, 756, 857
BseRI GAGGAG 2 cut(s) 596, 708
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 9 cut(s) 406, 409, 443, 463, 509, 551, 554, 664, 685
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 2 cut(s) 395, 440
BshFI GGCC 3 cut(s) 35, 183, 893
BshNI GGYRCC 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 645, 808
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 3 cut(s) 35, 183, 893
Bsp1286I GDGCHC 2 cut(s) 258, 487
Bsp143I GATC 6 cut(s) 17, 42, 279, 340, 595, 844
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 395, 440, 545
BspANI GGCC 3 cut(s) 35, 183, 893
BspCNI CTCAG 2 cut(s) 748, 800
BspFNI CGCG 2 cut(s) 395, 440
BspHI TCATGA 1 cut(s) 657
BspLI GGNNCC 2 cut(s) 26, 739
BspMAI CTGCAG 2 cut(s) 544, 631
BspT107I GGYRCC 1 cut(s) 737
BspTI CTTAAG 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 5 cut(s) 264, 385, 480, 756, 857
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 6 cut(s) 17, 42, 279, 340, 595, 844
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 206
BstAFI CTTAAG 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 393, 891
BstDEI CTNAG 2 cut(s) 756, 787
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 2 cut(s) 395, 440
BstKTI GATC 6 cut(s) 20, 45, 282, 343, 598, 847
BstMAI GTCTC 2 cut(s) 645, 808
BstMBI GATC 6 cut(s) 17, 42, 279, 340, 595, 844
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 71, 307
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 3 cut(s) 426, 540, 627
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 2 cut(s) 395, 440
BstV1I GCAGC 9 cut(s) 406, 409, 443, 463, 509, 551, 554, 664, 685
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 3 cut(s) 35, 183, 893
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 4 cut(s) 211, 487, 749, 850
Cac8I GCNNGC 2 cut(s) 393, 891
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 7 cut(s) 21, 37, 68, 145, 239, 304, 658
DdeI CTNAG 2 cut(s) 756, 787
DpnI GATC 6 cut(s) 19, 44, 281, 342, 597, 846
DpnII GATC 6 cut(s) 17, 42, 279, 340, 595, 844
EaeI YGGCCR 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 893
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 7 cut(s) 24, 40, 71, 148, 242, 307, 661
FatI CATG 7 cut(s) 20, 36, 67, 144, 238, 303, 657
FbaI TGATCA 2 cut(s) 279, 595
FokI GGATG 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 2 cut(s) 78, 533
GsuI CTGGAG 2 cut(s) 432, 693
HaeIII GGCC 3 cut(s) 35, 183, 893
Hin1II CATG 7 cut(s) 24, 40, 71, 148, 242, 307, 661
HincII GTYRAC 2 cut(s) 269, 634
HindII GTYRAC 2 cut(s) 269, 634
HinfI GANTC 3 cut(s) 82, 158, 779
HpaI GTTAAC 1 cut(s) 634
HphI GGTGA 1 cut(s) 854
Hpy166II GTNNAC 2 cut(s) 269, 634
Hpy188I TCNGA 3 cut(s) 189, 508, 825
Hpy188III TCNNGA 5 cut(s) 86, 251, 571, 599, 658
Hpy8I GTNNAC 2 cut(s) 269, 634
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 636, 861
HpyCH4V TGCA 9 cut(s) 242, 391, 452, 530, 542, 567, 578, 629, 749
HpyF3I CTNAG 2 cut(s) 756, 787
HpySE526I ACGT 2 cut(s) 636, 861
Hsp92II CATG 7 cut(s) 24, 40, 71, 148, 242, 307, 661
Ksp22I TGATCA 2 cut(s) 279, 595
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 6 cut(s) 17, 42, 279, 340, 595, 844
LmnI GCTCC 5 cut(s) 24, 261, 590, 674, 695
Lsp1109I GCAGC 9 cut(s) 406, 409, 443, 463, 509, 551, 554, 664, 685
LweI GCATC 2 cut(s) 545, 576
MaeI CTAG 2 cut(s) 78, 533
MaeII ACGT 2 cut(s) 636, 861
MalI GATC 6 cut(s) 19, 44, 281, 342, 597, 846
MboI GATC 6 cut(s) 17, 42, 279, 340, 595, 844
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 258, 487
MluCI AATT 2 cut(s) 275, 519
MlyI GAGTC 1 cut(s) 91
MseI TTAA 4 cut(s) 335, 633, 665, 708
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 3 cut(s) 476, 545, 671
MspCI CTTAAG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 395, 440
NcoI CCATGG 1 cut(s) 36
NdeII GATC 6 cut(s) 17, 42, 279, 340, 595, 844
NlaIII CATG 7 cut(s) 24, 40, 71, 148, 242, 307, 661
NlaIV GGNNCC 2 cut(s) 26, 739
NmeAIII GCCGAG 1 cut(s) 11
NspI RCATGY 2 cut(s) 71, 307
PagI TCATGA 1 cut(s) 657
PceI AGGCCT 1 cut(s) 893
PciI ACATGT 1 cut(s) 67
PctI GAATGC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 158, 779
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PscI ACATGT 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 26, 739
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 2 cut(s) 544, 631
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 2 cut(s) 476, 671
RseI CAYNNNNRTG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 4 cut(s) 335, 633, 665, 708
Sau3AI GATC 6 cut(s) 17, 42, 279, 340, 595, 844
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 258, 487
SfaNI GCATC 2 cut(s) 545, 576
SfcI CTRYAG 3 cut(s) 426, 540, 627
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 86, 707
SmoI CTYRAG 2 cut(s) 86, 707
Sse9I AATT 2 cut(s) 275, 519
SseBI AGGCCT 1 cut(s) 893
SsiI CCGC 3 cut(s) 395, 440, 545
SspMI CTAG 2 cut(s) 78, 533
SstI GAGCTC 1 cut(s) 258
StuI AGGCCT 1 cut(s) 893
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 2 cut(s) 639, 864
TaqI TCGA 2 cut(s) 524, 570
TasI AATT 2 cut(s) 275, 519
TauI GCSGC 3 cut(s) 398, 443, 548
TfiI GAWTC 2 cut(s) 158, 779
Tru1I TTAA 4 cut(s) 335, 633, 665, 708
Tru9I TTAA 4 cut(s) 335, 633, 665, 708
TscAI CASTG 4 cut(s) 211, 487, 756, 857
TseI GCWGC 9 cut(s) 419, 422, 431, 476, 497, 542, 564, 677, 698
TspDTI ATGAA 3 cut(s) 225, 230, 236
TspRI CASTG 4 cut(s) 211, 487, 756, 857
Vha464I CTTAAG 1 cut(s) 707
XapI RAATTY 1 cut(s) 519
XceI RCATGY 2 cut(s) 71, 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XspI CTAG 2 cut(s) 78, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.