MD15G1094600.v1.1

Plant pleckstrin homology-like region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
6628752 .. 6631594
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1094600.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGAAAATATTTATTTGGCTTCAAAACTCCTGCAGTTTGAAATGCTCAACAAACGGACTACTGCATGGCGTGCTGGAGAACATAGATGAAAATGGAGGTATAGTGAGCGGAACAGAGGGGTCGTCGGCGCCGCCGCCAGAAACTCCAACGGAGTCGATGGAGTTTCTGGCCAGATCGTGGAGTCTCTCAGCCATGGAGATCTCCAAAGCTCTTTCCCACACACGTGTGAACGTTGCTTCCAAGACCCTTGACAAGTCAGCGTTCAGTTCTGATGATGGTGTTGAATCACACGACAGAAGTGCCATGCGTTTAATGGAATCTTTACCCAGTGGAGTTAGCCCTCCAGTTTCGCCAAGAGACAGTGAAGAGATGAAGGAGTTACTTTTACTACACCAAGCACTCCACCCAGACTTCCTTTCCAGCCAGCAACAATTTCTCAATCATGGGCTATACAAGAGCATTTTGCGAGGGAAAACAATGGGCAGATGGTTAAAAGATCAGAAGGAGAGGAAGAAGCATGAAATCCGAACCCAAAATGCGCAGTTGCACGCTGCTGTTTCTGTGGCTGGGGTTGCTGCTGCTGTAGCATCAATTGCAGCTTCAACTGTATTTCCTGAAACATCAGCTGCCCACCAGAAAACACCAGTATCCGAATTGAGGACGGAAACATCAGCTGCGCTAGCATCCGCAGCAGCTCTAGTCGCTTCGCGTTGCATTGAGATTGCGGAGGAAATGGGAGCTGAGCATGATCATATTCTATCAGTTGTCAGTTCTGCAGTTAATGCAAGGACTAATGGAGATATCATGACCTTAACTGCAGGAGCAGCTACAGCTTTACGCGGAGCTGCCACACTTAAAGTGAGGCTGCAAAAGGAGTATGGTGGCACAACTGTTGCTCTGGCCGAGGAGAGATGTGAAGGCAACCAATCAAATGCAGCATTGAACTTTGTCTCAAAGGGTGGGGAGCTCCTTAAACGTACGAGGAAAGGTGCTCTTCACTGGAAGAGGGTTTCTTTCAATACTAACTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAGCATATGGCGGGAACATTTACGAAAAAGAAGAAATGTGTGGTCTCTGGAGTCTACTGTGACATCCCAGCTTGGCCCGGCAGGGAAAGAGAAGACGGCAGCAAACCAAGGGCATACTTTGGGATAAAAACAGCTGAAAGGACAATAGAATTTGAATGCAGAAGTCAAGGTGACAAACATATGTGGACTGAAGGGATCCGTCATATGTTGAATTTCATGCCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

46.47

Weight (kDa)

9.05

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 46 - 297 3.5e-87 Auxin canalisation
PH_2 PF08458 322 - 424 4.8e-43 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 1027
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 1113
AccII CGCG 2 cut(s) 709, 840
AciI CCGC 7 cut(s) 108, 131, 134, 687, 725, 840, 1070
AclI AACGTT 1 cut(s) 231
AclWI GGATC 2 cut(s) 1249, 1262
AcoI YGGCCR 2 cut(s) 168, 900
AcsI RAATTY 2 cut(s) 1208, 1270
AcuI CTGAAG 1 cut(s) 1269
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 979
AfiI CCNNNNNNNGG 2 cut(s) 177, 657
AflIII ACRYGT 2 cut(s) 221, 223
AgsI TTSAA 8 cut(s) 23, 40, 284, 603, 943, 1018, 1214, 1270
AleI CACNNNNGTG 2 cut(s) 222, 224
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
Alw21I GWGCWC 2 cut(s) 969, 994
Alw26I GTCTC 4 cut(s) 188, 351, 955, 1108
AlwI GGATC 2 cut(s) 1249, 1262
AoxI GGCC 3 cut(s) 168, 900, 1133
ApoI RAATTY 2 cut(s) 1208, 1270
AspLEI GCGC 3 cut(s) 130, 541, 679
AspS9I GGNCC 1 cut(s) 1134
AsuC2I CCSGG 1 cut(s) 1137
AsuHPI GGTGA 1 cut(s) 1241
AsuNHI GCTAGC 1 cut(s) 679
BaeI ACNNNNGTAYC 2 cut(s) 630, 663
BalI TGGCCA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 1254
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 969
BbrPI CACGTG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 1158
Bbv12I GWGCWC 2 cut(s) 969, 994
BccI CCATC 3 cut(s) 151, 269, 480
BceAI ACGGC 1 cut(s) 1171
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciVI GTATCC 1 cut(s) 658
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 1 cut(s) 1137
BcoDI GTCTC 4 cut(s) 188, 351, 955, 1108
BfaI CTAG 2 cut(s) 680, 698
BfmI CTRYAG 5 cut(s) 31, 582, 774, 816, 828
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 1027
BfuI GTATCC 1 cut(s) 658
BglII AGATCT 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 741
Bme1390I CCNGG 1 cut(s) 1137
BmgT120I GGNCC 1 cut(s) 1134
BmiI GGNNCC 2 cut(s) 129, 1256
BmrFI CCNGG 1 cut(s) 1137
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 596, 692
BmtI GCTAGC 1 cut(s) 683
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 1158
BpmI CTGGAG 3 cut(s) 95, 327, 1128
Bpu1102I GCTNAGC 1 cut(s) 741
BpuMI CCSGG 1 cut(s) 1137
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 3 cut(s) 192, 903, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 657
Bse1I ACTGG 4 cut(s) 327, 344, 644, 1004
BseDI CCNNGG 3 cut(s) 192, 903, 1166
BseGI GGATG 2 cut(s) 683, 1122
BseLI CCNNNNNNNGG 2 cut(s) 177, 657
BseMII CTCAG 2 cut(s) 201, 732
BseNI ACTGG 4 cut(s) 327, 344, 644, 1004
BseRI GAGGAG 1 cut(s) 920
BseYI CCCAGC 2 cut(s) 566, 1126
Bsh1236I CGCG 2 cut(s) 709, 840
BshFI GGCC 3 cut(s) 170, 902, 1135
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 969, 994
BsiSI CCGG 1 cut(s) 1137
BsiWI CGTACG 1 cut(s) 977
BslI CCNNNNNNNGG 2 cut(s) 177, 657
BsmAI GTCTC 4 cut(s) 188, 351, 955, 1108
BsmI GAATGC 1 cut(s) 1220
BsnI GGCC 3 cut(s) 170, 902, 1135
Bso31I GGTCTC 1 cut(s) 1108
Bsp1286I GDGCHC 2 cut(s) 969, 994
Bsp143I GATC 5 cut(s) 173, 198, 496, 748, 1254
Bsp1720I GCTNAGC 1 cut(s) 741
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 7 cut(s) 108, 131, 134, 687, 725, 840, 1070
BspANI GGCC 3 cut(s) 170, 902, 1135
BspCNI CTCAG 2 cut(s) 200, 733
BspFNI CGCG 2 cut(s) 709, 840
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 129, 1256
BspMAI CTGCAG 3 cut(s) 35, 778, 820
BspMI ACCTGC 1 cut(s) 1027
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 2 cut(s) 1249, 1262
BspQI GCTCTTC 1 cut(s) 999
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 1108
BsrBI CCGCTC 1 cut(s) 108
BsrI ACTGG 4 cut(s) 327, 344, 644, 1004
BssECI CCNNGG 3 cut(s) 192, 903, 1166
BssMI GATC 5 cut(s) 173, 198, 496, 748, 1254
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 192, 1166
Bst4CI ACNGT 4 cut(s) 362, 607, 892, 1118
Bst6I CTCTTC 3 cut(s) 360, 998, 999
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 3 cut(s) 70, 593, 782
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 5 cut(s) 71, 425, 549, 681, 1061
BstDEI CTNAG 2 cut(s) 187, 741
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 683, 1122
BstFNI CGCG 2 cut(s) 709, 840
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 3 cut(s) 130, 541, 679
BstKTI GATC 5 cut(s) 176, 201, 499, 751, 1257
BstMAI GTCTC 4 cut(s) 188, 351, 955, 1108
BstMBI GATC 5 cut(s) 173, 198, 496, 748, 1254
BstSCI CCNGG 1 cut(s) 1135
BstSFI CTRYAG 5 cut(s) 31, 582, 774, 816, 828
BstUI CGCG 2 cut(s) 709, 840
BstV2I GAAGAC 1 cut(s) 1158
BstX2I RGATCY 2 cut(s) 198, 1254
BstYI RGATCY 2 cut(s) 198, 1254
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 3 cut(s) 170, 902, 1135
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 683, 1122
BtsIMutI CAGTG 3 cut(s) 334, 367, 997
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 5 cut(s) 71, 425, 549, 681, 1061
CciI TCATGA 1 cut(s) 804
CfoI GCGC 3 cut(s) 130, 541, 679
Cfr13I GGNCC 1 cut(s) 1134
Csp6I GTAC 1 cut(s) 978
CviAII CATG 8 cut(s) 65, 193, 304, 443, 518, 746, 805, 1276
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 2 cut(s) 187, 741
DinI GGCGCC 1 cut(s) 129
DpnI GATC 5 cut(s) 175, 200, 498, 750, 1256
DpnII GATC 5 cut(s) 173, 198, 496, 748, 1254
EaeI YGGCCR 2 cut(s) 168, 900
Eam1104I CTCTTC 3 cut(s) 360, 998, 999
EarI CTCTTC 3 cut(s) 360, 998, 999
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 192, 1166
Eco24I GRGCYC 1 cut(s) 969
Eco31I GGTCTC 1 cut(s) 1108
Eco32I GATATC 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 1269
Eco72I CACGTG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 967
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 2 cut(s) 192, 1166
EcoT38I GRGCYC 1 cut(s) 969
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 192, 1166
FaeI CATG 8 cut(s) 68, 196, 307, 446, 521, 749, 808, 1279
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FatI CATG 8 cut(s) 64, 192, 303, 442, 517, 745, 804, 1275
FauI CCCGC 1 cut(s) 1063
FauNDI CATATG 3 cut(s) 1065, 1239, 1263
FbaI TGATCA 1 cut(s) 748
FblI GTMKAC 1 cut(s) 1113
FokI GGATG 2 cut(s) 670, 1109
FriOI GRGCYC 1 cut(s) 969
FspBI CTAG 2 cut(s) 680, 698
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 3 cut(s) 129, 540, 678
GsaI CCCAGC 2 cut(s) 570, 1130
GsuI CTGGAG 3 cut(s) 95, 327, 1128
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 3 cut(s) 170, 902, 1135
HapII CCGG 1 cut(s) 1137
HhaI GCGC 3 cut(s) 130, 541, 679
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 8 cut(s) 68, 196, 307, 446, 521, 749, 808, 1279
Hin6I GCGC 3 cut(s) 128, 539, 677
HinP1I GCGC 3 cut(s) 128, 539, 677
HinfI GANTC 5 cut(s) 152, 181, 284, 317, 1110
HpaII CCGG 1 cut(s) 1137
HphI GGTGA 1 cut(s) 1241
Hpy166II GTNNAC 3 cut(s) 229, 1114, 1245
Hpy188I TCNGA 4 cut(s) 271, 501, 527, 652
Hpy188III TCNNGA 3 cut(s) 614, 805, 1107
Hpy8I GTNNAC 3 cut(s) 229, 1114, 1245
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 4 cut(s) 367, 496, 911, 1244
HpyCH4III ACNGT 4 cut(s) 362, 607, 892, 1118
HpyCH4IV ACGT 3 cut(s) 223, 231, 976
HpyF3I CTNAG 2 cut(s) 187, 741
HpySE526I ACGT 3 cut(s) 223, 231, 976
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 8 cut(s) 68, 196, 307, 446, 521, 749, 808, 1279
HspAI GCGC 3 cut(s) 128, 539, 677
KasI GGCGCC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 5 cut(s) 173, 198, 496, 748, 1254
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 5 cut(s) 737, 821, 842, 964, 972
LweI GCATC 2 cut(s) 596, 692
MaeI CTAG 2 cut(s) 680, 698
MaeII ACGT 3 cut(s) 223, 231, 976
MaeIII GTNAC 3 cut(s) 378, 1118, 1229
MalI GATC 5 cut(s) 175, 200, 498, 750, 1256
MbiI CCGCTC 1 cut(s) 108
MboI GATC 5 cut(s) 173, 198, 496, 748, 1254
MboII GAAGA 6 cut(s) 377, 523, 986, 1015, 1102, 1163
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 198, 1254
MhlI GDGCHC 2 cut(s) 969, 994
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 5 cut(s) 431, 591, 653, 1208, 1270
MluNI TGGCCA 1 cut(s) 170
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 3 cut(s) 161, 190, 1119
MmeI TCCRAC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 6 cut(s) 311, 491, 780, 812, 855, 972
MslI CAYNNNNRTG 2 cut(s) 222, 224
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 3 cut(s) 626, 674, 1193
MspI CCGG 1 cut(s) 1137
MspR9I CCNGG 1 cut(s) 1137
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 1 cut(s) 1220
MvnI CGCG 2 cut(s) 709, 840
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 1 cut(s) 1137
NcoI CCATGG 1 cut(s) 192
NdeI CATATG 3 cut(s) 1065, 1239, 1263
NdeII GATC 5 cut(s) 173, 198, 496, 748, 1254
NheI GCTAGC 1 cut(s) 679
NlaIII CATG 8 cut(s) 68, 196, 307, 446, 521, 749, 808, 1279
NlaIV GGNNCC 2 cut(s) 129, 1256
NmeAIII GCCGAG 1 cut(s) 928
NmuCI GTSAC 2 cut(s) 1118, 1229
NsbI TGCGCA 1 cut(s) 540
OliI CACNNNNGTG 2 cut(s) 222, 224
PagI TCATGA 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 999
PctI GAATGC 1 cut(s) 1220
PfeI GAWTC 2 cut(s) 284, 317
Pfl23II CGTACG 1 cut(s) 977
PflMI CCANNNNNTGG 1 cut(s) 177
PleI GAGTC 3 cut(s) 160, 189, 1118
PluTI GGCGCC 1 cut(s) 131
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 3 cut(s) 160, 189, 1118
Ppu21I YACGTR 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 969
Psp1406I AACGTT 1 cut(s) 231
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 2 cut(s) 566, 1126
PspLI CGTACG 1 cut(s) 977
PspN4I GGNNCC 2 cut(s) 129, 1256
PspPI GGNCC 1 cut(s) 1134
PstI CTGCAG 3 cut(s) 35, 778, 820
PsuI RGATCY 2 cut(s) 198, 1254
PvuII CAGCTG 3 cut(s) 626, 674, 1193
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
RseI CAYNNNNRTG 2 cut(s) 222, 224
SacI GAGCTC 1 cut(s) 969
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 6 cut(s) 311, 491, 780, 812, 855, 972
Sau3AI GATC 5 cut(s) 173, 198, 496, 748, 1254
Sau96I GGNCC 1 cut(s) 1134
SchI GAGTC 3 cut(s) 161, 190, 1119
ScrFI CCNGG 1 cut(s) 1137
SduI GDGCHC 2 cut(s) 969, 994
SfaNI GCATC 2 cut(s) 596, 692
SfcI CTRYAG 5 cut(s) 31, 582, 774, 816, 828
SfoI GGCGCC 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 222, 224
Sse9I AATT 5 cut(s) 431, 591, 653, 1208, 1270
SsiI CCGC 7 cut(s) 108, 131, 134, 687, 725, 840, 1070
SspDI GGCGCC 1 cut(s) 127
SspI AATATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 680, 698
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 1 cut(s) 1135
StyI CCWWGG 2 cut(s) 192, 1166
TaaI ACNGT 4 cut(s) 362, 607, 892, 1118
TaiI ACGT 3 cut(s) 226, 234, 979
TaqI TCGA 1 cut(s) 155
TasI AATT 5 cut(s) 431, 591, 653, 1208, 1270
TauI GCSGC 2 cut(s) 133, 136
TfiI GAWTC 2 cut(s) 284, 317
Tru1I TTAA 6 cut(s) 311, 491, 780, 812, 855, 972
Tru9I TTAA 6 cut(s) 311, 491, 780, 812, 855, 972
TscAI CASTG 3 cut(s) 334, 367, 1004
TseFI GTSAC 2 cut(s) 1118, 1229
Tsp45I GTSAC 2 cut(s) 1118, 1229
TspDTI ATGAA 6 cut(s) 17, 102, 386, 534, 1067, 1264
TspGWI ACGGA 4 cut(s) 69, 164, 677, 1247
TspRI CASTG 3 cut(s) 334, 367, 1004
Van91I CCANNNNNTGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 1208, 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 1113
XspI CTAG 2 cut(s) 680, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.