Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Forward (+)

64277981 .. 64280258

Gene Structure 2278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG473300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGTGTCAGTGAGCTCTTGTAGTTTGAAATGCTCGACGAATCGACATGGGCTGGAGAACATAGACGAAAATGGTGGCACCAGTATTGGGGCGGCGGGTTTATGTGCCCCGCCACCCGAAACTCCGACGGAGTCCATGGAGTTTCTGGCGAGATCATGGAGCCTCTCGGCCATGGAGATCTCCAAAGCTCTTTCCCACTCACATGTTGCTTCTAGGAGTCTTGAGAATAAGTCAGCATTCTCTTATGATGGTATTGCTGAAACTCGCCATTCAAGTTCCATGCGTTTGAGCGAATCATCTCTGCCTGGTGGAGTTGGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCATGCACTTCATCCAGAGCTCCTTTCCAGTCAACAACAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGTAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAAGAAATGAGAAGCCAAAATGCCCAGTTGCACGCGGCAGTTTCTGTGGCTGGAGTTGCTGCTGCTGTAGCAGCACTCGCGGCTTCAACTGCATTGCCTGAAACTGAAACATCAGCTGCCAGTGCCCACCACAAAGCAGCAGTATCCGAGAGGACTGAAATTTCGACTGCACTAGCATCTGCAGCGGCTCTGGTAGCTTCACGCTGCATCGAGATTGCAGAGGAGATGGGAGCTGATCACGACCATATTCTATCAGTTGTCAGTTCTGCAGTTAACGTGAGGACTAATGGAGACATCATGACCTTAACAGCTGGAGCTGCCACAGCTTTACGAGGAGCTGCTACACTTAAGGCAAGGCTACAAAAGGAGTATGGAGGCACCACTTTTGCACTGGCTGAGGAAAAATGTGATGGAAAAGAATCAAACTCAGCATTGAACTTTGTCTCAAAAGGAGGGGAACTTCTGAAACGCACAAGGAAAGGTGATCTCCACTGGAAACACGTTTCTTTCAACACCAACTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAACACATGGCGGGAACATTTACAAAGAAGAAGAAATGTGTAGTCTCTGAAGTCTACTGTGACATAGCAGCGTGGCCAGGAAGGGAGAGGGAAGATTGCAGCAAACCAAGGGCATACTTTGGCATCAAAACAGCTGACAGGACAATAGAATTTGAATGCAGAAGTAAAAGGGACAAGCATATGTGGACTGAGGGGATTCAGAATATGTTGAATTTCATACCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

424

Amino Acids

45.79

Weight (kDa)

8.94

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	39 - 293	3e-88	Auxin canalisation
PH_2	PF08458	318 - 420	4.6e-43	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1015
AccB1I	GGYRCC	2 cut(s)	77, 872
AccI	GTMKAC	1 cut(s)	1101
AccII	CGCG	2 cut(s)	530, 575
AciI	CCGC	7 cut(s)	92, 95, 110, 530, 575, 680, 1058
AcoI	YGGCCR	2 cut(s)	168, 1121
AcsI	RAATTY	3 cut(s)	654, 1196, 1258
AcuI	CTGAAG	1 cut(s)	1116
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	2 cut(s)	202, 994
AgsI	TTSAA	7 cut(s)	28, 273, 582, 931, 1006, 1202, 1258
AjnI	CCWGG	2 cut(s)	304, 1123
Alw21I	GWGCWC	2 cut(s)	17, 393
Alw26I	GTCTC	3 cut(s)	780, 943, 1096
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	3 cut(s)	168, 316, 1121
ApoI	RAATTY	3 cut(s)	654, 1196, 1258
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	989
BaeGI	GKGCMC	2 cut(s)	109, 622
BalI	TGGCCA	1 cut(s)	1123
BanI	GGYRCC	2 cut(s)	77, 872
BanII	GRGCYC	2 cut(s)	17, 393
Bbv12I	GWGCWC	2 cut(s)	17, 393
BbvCI	CCTCAGC	1 cut(s)	891
BccI	CCATC	4 cut(s)	242, 459, 715, 899
BciT130I	CCWGG	2 cut(s)	306, 1125
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	2 cut(s)	414, 730
BcoDI	GTCTC	3 cut(s)	780, 943, 1096
BfaI	CTAG	2 cut(s)	213, 668
BfmI	CTRYAG	3 cut(s)	561, 675, 762
BfrI	CTTAAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	1015
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	306, 1125
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	79, 161, 874
BmrFI	CCNGG	2 cut(s)	306, 1125
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	3 cut(s)	680, 711, 1179
BmuI	ACTGGG	1 cut(s)	514
BpmI	CTGGAG	3 cut(s)	74, 567, 828
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	135, 171, 1154
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	6 cut(s)	81, 399, 520, 615, 891, 992
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	2 cut(s)	306, 1125
BseDI	CCNNGG	3 cut(s)	135, 171, 1154
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	3 cut(s)	882, 936, 1227
BseNI	ACTGG	6 cut(s)	81, 399, 520, 615, 891, 992
BseRI	GAGGAG	2 cut(s)	731, 843
BseSI	GKGCMC	2 cut(s)	109, 622
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	2 cut(s)	530, 575
BshFI	GGCC	3 cut(s)	170, 318, 1123
BshNI	GGYRCC	2 cut(s)	77, 872
BsiHKAI	GWGCWC	2 cut(s)	17, 393
BslFI	GGGAC	1 cut(s)	1232
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	780, 943, 1096
BsmFI	GGGAC	1 cut(s)	1232
BsmI	GAATGC	2 cut(s)	236, 1208
BsnI	GGCC	3 cut(s)	170, 318, 1123
Bsp1286I	GDGCHC	4 cut(s)	17, 109, 393, 622
Bsp143I	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
Bsp19I	CCATGG	2 cut(s)	135, 171
BspACI	CCGC	7 cut(s)	92, 95, 110, 530, 575, 680, 1058
BspANI	GGCC	3 cut(s)	170, 318, 1123
BspCNI	CTCAG	3 cut(s)	883, 935, 1228
BspFNI	CGCG	2 cut(s)	530, 575
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	3 cut(s)	79, 161, 874
BspMAI	CTGCAG	2 cut(s)	679, 766
BspMI	ACCTGC	1 cut(s)	1015
BspT107I	GGYRCC	2 cut(s)	77, 872
BspTI	CTTAAG	1 cut(s)	842
BsrDI	GCAATG	1 cut(s)	587
BsrI	ACTGG	6 cut(s)	81, 399, 520, 615, 891, 992
BssECI	CCNNGG	3 cut(s)	135, 171, 1154
BssMI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
BssT1I	CCWWGG	3 cut(s)	135, 171, 1154
Bst2UI	CCWGG	2 cut(s)	306, 1125
Bst4CI	ACNGT	2 cut(s)	341, 1106
BstAFI	CTTAAG	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	891, 922, 1236
BstDSI	CCRYGG	2 cut(s)	135, 171
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	530, 575
BstKTI	GATC	6 cut(s)	155, 180, 417, 478, 733, 982
BstMAI	GTCTC	3 cut(s)	780, 943, 1096
BstMBI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
BstNI	CCWGG	2 cut(s)	306, 1125
BstNSI	RCATGY	2 cut(s)	206, 442
BstSCI	CCNGG	2 cut(s)	304, 1123
BstSFI	CTRYAG	3 cut(s)	561, 675, 762
BstSLI	GKGCMC	2 cut(s)	109, 622
BstUI	CGCG	2 cut(s)	530, 575
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	170, 318, 1123
BtgI	CCRYGG	2 cut(s)	135, 171
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	5 cut(s)	15, 346, 622, 884, 985
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	317
DdeI	CTNAG	3 cut(s)	891, 922, 1236
DpnI	GATC	6 cut(s)	154, 179, 416, 477, 732, 981
DpnII	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
EaeI	YGGCCR	2 cut(s)	168, 1121
Ecl136II	GAGCTC	2 cut(s)	15, 391
Eco130I	CCWWGG	3 cut(s)	135, 171, 1154
Eco24I	GRGCYC	2 cut(s)	17, 393
Eco53kI	GAGCTC	2 cut(s)	15, 391
Eco57I	CTGAAG	1 cut(s)	1116
EcoICRI	GAGCTC	2 cut(s)	15, 391
EcoRII	CCWGG	2 cut(s)	304, 1123
EcoT14I	CCWWGG	3 cut(s)	135, 171, 1154
EcoT38I	GRGCYC	2 cut(s)	17, 393
ErhI	CCWWGG	3 cut(s)	135, 171, 1154
FaqI	GGGAC	1 cut(s)	1232
FauI	CCCGC	3 cut(s)	88, 117, 1051
FauNDI	CATATG	1 cut(s)	1227
FbaI	TGATCA	2 cut(s)	414, 730
FblI	GTMKAC	1 cut(s)	1101
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	2 cut(s)	17, 393
FspBI	CTAG	2 cut(s)	213, 668
GsuI	CTGGAG	3 cut(s)	74, 567, 828
HaeIII	GGCC	3 cut(s)	170, 318, 1123
HincII	GTYRAC	2 cut(s)	404, 769
HindII	GTYRAC	2 cut(s)	404, 769
HinfI	GANTC	6 cut(s)	40, 131, 217, 293, 914, 1243
HpaI	GTTAAC	1 cut(s)	769
HphI	GGTGA	1 cut(s)	989
Hpy166II	GTNNAC	4 cut(s)	404, 769, 1102, 1233
Hpy188I	TCNGA	6 cut(s)	126, 324, 643, 960, 1096, 1248
Hpy188III	TCNNGA	5 cut(s)	221, 386, 706, 734, 793
Hpy8I	GTNNAC	4 cut(s)	404, 769, 1102, 1233
Hpy99I	CGWCG	2 cut(s)	40, 130
HpyAV	CCTTC	2 cut(s)	346, 1122
HpyCH4III	ACNGT	2 cut(s)	341, 1106
HpyCH4IV	ACGT	2 cut(s)	771, 996
HpyF3I	CTNAG	3 cut(s)	891, 922, 1236
HpySE526I	ACGT	2 cut(s)	771, 996
Ksp22I	TGATCA	2 cut(s)	414, 730
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
LmnI	GCTCC	5 cut(s)	159, 396, 725, 809, 830
LweI	GCATC	3 cut(s)	680, 711, 1179
MaeI	CTAG	2 cut(s)	213, 668
MaeII	ACGT	2 cut(s)	771, 996
MaeIII	GTNAC	1 cut(s)	1106
MalI	GATC	6 cut(s)	154, 179, 416, 477, 732, 981
MboI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
MboII	GAAGA	3 cut(s)	1087, 1090, 1151
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	4 cut(s)	17, 109, 393, 622
MlsI	TGGCCA	1 cut(s)	1123
MluCI	AATT	4 cut(s)	410, 654, 1196, 1258
MluNI	TGGCCA	1 cut(s)	1123
MlyI	GAGTC	2 cut(s)	140, 226
MmeI	TCCRAC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	1123
MscI	TGGCCA	1 cut(s)	1123
MseI	TTAA	4 cut(s)	470, 768, 800, 843
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	1123
MspA1I	CMGCKG	4 cut(s)	611, 680, 806, 1181
MspCI	CTTAAG	1 cut(s)	842
MspR9I	CCNGG	2 cut(s)	306, 1125
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	2 cut(s)	236, 1208
MvaI	CCWGG	2 cut(s)	306, 1125
MvnI	CGCG	2 cut(s)	530, 575
NcoI	CCATGG	2 cut(s)	135, 171
NdeI	CATATG	1 cut(s)	1227
NdeII	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
NlaIV	GGNNCC	3 cut(s)	79, 161, 874
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	1106
NspI	RCATGY	2 cut(s)	206, 442
PagI	TCATGA	1 cut(s)	792
PciI	ACATGT	1 cut(s)	202
PctI	GAATGC	2 cut(s)	236, 1208
PfeI	GAWTC	4 cut(s)	40, 293, 914, 1243
PflFI	GACNNNGTC	1 cut(s)	130
PleI	GAGTC	2 cut(s)	139, 225
PpsI	GAGTC	2 cut(s)	139, 225
PscI	ACATGT	1 cut(s)	202
Psp124BI	GAGCTC	2 cut(s)	17, 393
Psp6I	CCWGG	2 cut(s)	304, 1123
PspGI	CCWGG	2 cut(s)	304, 1123
PspN4I	GGNNCC	3 cut(s)	79, 161, 874
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	2 cut(s)	679, 766
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	130
PvuII	CAGCTG	3 cut(s)	611, 806, 1181
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	2 cut(s)	17, 393
SaqAI	TTAA	4 cut(s)	470, 768, 800, 843
Sau3AI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	140, 226
ScrFI	CCNGG	2 cut(s)	306, 1125
SduI	GDGCHC	4 cut(s)	17, 109, 393, 622
SfaNI	GCATC	3 cut(s)	680, 711, 1179
SfcI	CTRYAG	3 cut(s)	561, 675, 762
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	221, 842
SmoI	CTYRAG	2 cut(s)	221, 842
Sse9I	AATT	4 cut(s)	410, 654, 1196, 1258
SsiI	CCGC	7 cut(s)	92, 95, 110, 530, 575, 680, 1058
SspMI	CTAG	2 cut(s)	213, 668
SstI	GAGCTC	2 cut(s)	17, 393
StyD4I	CCNGG	2 cut(s)	304, 1123
StyI	CCWWGG	3 cut(s)	135, 171, 1154
TaaI	ACNGT	2 cut(s)	341, 1106
TaiI	ACGT	2 cut(s)	774, 999
TaqI	TCGA	4 cut(s)	35, 43, 659, 705
TasI	AATT	4 cut(s)	410, 654, 1196, 1258
TauI	GCSGC	4 cut(s)	95, 533, 578, 683
TfiI	GAWTC	4 cut(s)	40, 293, 914, 1243
Tru1I	TTAA	4 cut(s)	470, 768, 800, 843
Tru9I	TTAA	4 cut(s)	470, 768, 800, 843
TscAI	CASTG	5 cut(s)	15, 346, 622, 891, 992
TseFI	GTSAC	1 cut(s)	1106
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	5 cut(s)	360, 365, 371, 1055, 1252
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	5 cut(s)	15, 346, 622, 891, 992
Tth111I	GACNNNGTC	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	842
XapI	RAATTY	3 cut(s)	654, 1196, 1258
XceI	RCATGY	2 cut(s)	206, 442
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 883
XmiI	GTMKAC	1 cut(s)	1101
XspI	CTAG	2 cut(s)	213, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.