Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023505.1

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Reverse (-)

10914 .. 13230

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023505.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atgcaaattgcaagaccaatattgtggaaaaactttgaagctaactctgtctgtgcttgtgttatggtgtcagtgagctcttgtagtttgaaatgctcgacgaatcgacatgggttggagaacatagacgaaaatagtggcaccagtattggagcggcgggtttatgtgccccgccacctgaaactccgacggagtccatggagtttctggcgagatcatggagcctctcggccatggagatctccaaagctctttcccactcacatgttgcttctaagagtcttgagaataagtcagcattctcttatgatggtattgctgaaactcgccattcaagttccatgcgtttgagcgaatcatctctgcctggtggagttagccctccgatttcgccaagaaacagtgatgaaatgaaggagttgtttttactacatcatgcacttcatccagagttcctttccagtcaacaacaattgatcaataatgggctatacaagagcatgttgagaggtaaaacaatggggagatggttaaaagatcaaaaggagagaaagaagcaagaaatgagaagccaaaatgcccagttgcacgcggcagtttctgtggctggagttgctgctgctgtagcagcactcgcagcttcagctgcattgcctgaaactgaaacatcagctgccagtgcccaccacaaagcagcagtatccgagaggactgaaatttcgactgcactagcatctgcagcggctctggtagcttcacgctgcatcgagattgcagaggagatgggagctgatcacgaccatattctatcagttgtcagttctgcagttagcgcgaggactaatggagacatcatgaccttaacagctggagctgccacagctttacgaggagctgctacacttaaggtaaggctacaaaaagagtatggaggcaccacttttgcactggctgaggaaaaatgtgatggaaaagaatcaaactcagcattgaacttcgtctcaaaaggaggggaacttctgaaacgcacaaggaaaggtgatctccactggaaacaagtttctttcaacaccaactcaaatgggcaggttgtagccaaaatgaaaagcaaacacatggcgggaacatttacaaagaagaagacatgtgtagtctctgaagtctactgtgacatagcagcgtggccaggaagggagagggaagattgcagcaaaccaagggcatactttggcatcaaaacagctgacaggacaatagaatttgaatgcagaagtaaaagggacaagcatacgtggactgaggggattcagaatatgttgaatttcataccaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

445

Amino Acids

48.11

Weight (kDa)

8.86

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1078
AccB1I	GGYRCC	2 cut(s)	140, 935
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	1164
AccII	CGCG	2 cut(s)	593, 836
AciI	CCGC	6 cut(s)	155, 158, 173, 593, 743, 1121
AcoI	YGGCCR	2 cut(s)	231, 1184
AcsI	RAATTY	3 cut(s)	717, 1259, 1321
AcuI	CTGAAG	2 cut(s)	627, 1179
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	2 cut(s)	265, 1145
AgsI	TTSAA	7 cut(s)	38, 91, 336, 994, 1069, 1265, 1321
AjnI	CCWGG	2 cut(s)	367, 1186
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	843, 1006, 1159
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	231, 1184
ApoI	RAATTY	3 cut(s)	717, 1259, 1321
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AspLEI	GCGC	1 cut(s)	836
AsuHPI	GGTGA	1 cut(s)	1052
BaeGI	GKGCMC	2 cut(s)	172, 685
BalI	TGGCCA	1 cut(s)	1186
BanI	GGYRCC	2 cut(s)	140, 935
BanII	GRGCYC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	1148
Bbv12I	GWGCWC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	954
BccI	CCATC	4 cut(s)	305, 522, 778, 962
BciT130I	CCWGG	2 cut(s)	369, 1188
BciVI	GTATCC	1 cut(s)	712
BclI	TGATCA	2 cut(s)	477, 793
BcoDI	GTCTC	3 cut(s)	843, 1006, 1159
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	3 cut(s)	624, 738, 825
BfrI	CTTAAG	1 cut(s)	905
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	1 cut(s)	712
BglII	AGATCT	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	369, 1188
BmiI	GGNNCC	3 cut(s)	142, 224, 937
BmrFI	CCNGG	2 cut(s)	369, 1188
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	743, 774, 1242
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	1148
BpmI	CTGGAG	2 cut(s)	630, 891
Bpu10I	CCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	1293
BsaJI	CCNNGG	3 cut(s)	198, 234, 1217
Bse1I	ACTGG	6 cut(s)	144, 462, 583, 678, 954, 1055
Bse3DI	GCAATG	1 cut(s)	650
BseBI	CCWGG	2 cut(s)	369, 1188
BseDI	CCNNGG	3 cut(s)	198, 234, 1217
BseGI	GGATG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	3 cut(s)	945, 999, 1290
BseNI	ACTGG	6 cut(s)	144, 462, 583, 678, 954, 1055
BseRI	GAGGAG	2 cut(s)	794, 906
BseSI	GKGCMC	2 cut(s)	172, 685
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	2 cut(s)	593, 836
BshFI	GGCC	2 cut(s)	233, 1186
BshNI	GGYRCC	2 cut(s)	140, 935
BsiHKAI	GWGCWC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	1295
BsmAI	GTCTC	3 cut(s)	843, 1006, 1159
BsmBI	CGTCTC	1 cut(s)	1006
BsmFI	GGGAC	1 cut(s)	1295
BsmI	GAATGC	2 cut(s)	299, 1271
BsnI	GGCC	2 cut(s)	233, 1186
Bsp1286I	GDGCHC	3 cut(s)	80, 172, 685
Bsp143I	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
Bsp19I	CCATGG	2 cut(s)	198, 234
BspACI	CCGC	6 cut(s)	155, 158, 173, 593, 743, 1121
BspANI	GGCC	2 cut(s)	233, 1186
BspCNI	CTCAG	3 cut(s)	946, 998, 1291
BspFNI	CGCG	2 cut(s)	593, 836
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	3 cut(s)	142, 224, 937
BspMAI	CTGCAG	2 cut(s)	742, 829
BspMI	ACCTGC	1 cut(s)	1078
BspT107I	GGYRCC	2 cut(s)	140, 935
BspTI	CTTAAG	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	6 cut(s)	144, 462, 583, 678, 954, 1055
BssECI	CCNNGG	3 cut(s)	198, 234, 1217
BssMI	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
BssT1I	CCWWGG	3 cut(s)	198, 234, 1217
Bst2UI	CCWGG	2 cut(s)	369, 1188
Bst4CI	ACNGT	2 cut(s)	404, 1169
BstAFI	CTTAAG	1 cut(s)	905
BstBAI	YACGTR	1 cut(s)	1293
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	276, 954, 985, 1299
BstDSI	CCRYGG	2 cut(s)	198, 234
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	2 cut(s)	593, 836
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	6 cut(s)	218, 243, 480, 541, 796, 1045
BstMAI	GTCTC	3 cut(s)	843, 1006, 1159
BstMBI	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
BstNI	CCWGG	2 cut(s)	369, 1188
BstNSI	RCATGY	3 cut(s)	269, 505, 1149
BstSCI	CCNGG	2 cut(s)	367, 1186
BstSFI	CTRYAG	3 cut(s)	624, 738, 825
BstSLI	GKGCMC	2 cut(s)	172, 685
BstUI	CGCG	2 cut(s)	593, 836
BstV2I	GAAGAC	1 cut(s)	1148
BstX2I	RGATCY	1 cut(s)	240
BstXI	CCANNNNNNTGG	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	233, 1186
BtgI	CCRYGG	2 cut(s)	198, 234
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	5 cut(s)	78, 409, 685, 947, 1048
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	836
DdeI	CTNAG	4 cut(s)	276, 954, 985, 1299
DpnI	GATC	6 cut(s)	217, 242, 479, 540, 795, 1044
DpnII	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
EaeI	YGGCCR	2 cut(s)	231, 1184
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	3 cut(s)	198, 234, 1217
Eco24I	GRGCYC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	627, 1179
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	367, 1186
EcoT14I	CCWWGG	3 cut(s)	198, 234, 1217
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	3 cut(s)	198, 234, 1217
Esp3I	CGTCTC	1 cut(s)	1006
FaqI	GGGAC	1 cut(s)	1295
FauI	CCCGC	3 cut(s)	151, 180, 1114
FbaI	TGATCA	2 cut(s)	477, 793
FblI	GTMKAC	1 cut(s)	1164
FokI	GGATG	1 cut(s)	432
FriOI	GRGCYC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	1 cut(s)	835
GsuI	CTGGAG	2 cut(s)	630, 891
HaeIII	GGCC	2 cut(s)	233, 1186
HhaI	GCGC	1 cut(s)	836
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HinfI	GANTC	6 cut(s)	103, 194, 280, 356, 977, 1306
HphI	GGTGA	1 cut(s)	1052
Hpy166II	GTNNAC	3 cut(s)	467, 1165, 1296
Hpy188I	TCNGA	6 cut(s)	189, 387, 706, 1023, 1159, 1311
Hpy188III	TCNNGA	5 cut(s)	284, 449, 769, 797, 856
Hpy8I	GTNNAC	3 cut(s)	467, 1165, 1296
Hpy99I	CGWCG	2 cut(s)	103, 193
HpyAV	CCTTC	2 cut(s)	409, 1185
HpyCH4III	ACNGT	2 cut(s)	404, 1169
HpyCH4IV	ACGT	1 cut(s)	1292
HpyF3I	CTNAG	4 cut(s)	276, 954, 985, 1299
HpySE526I	ACGT	1 cut(s)	1292
HspAI	GCGC	1 cut(s)	834
Ksp22I	TGATCA	2 cut(s)	477, 793
Kzo9I	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
LmnI	GCTCC	5 cut(s)	152, 222, 788, 872, 893
LweI	GCATC	3 cut(s)	743, 774, 1242
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	1 cut(s)	1292
MaeIII	GTNAC	1 cut(s)	1169
MalI	GATC	6 cut(s)	217, 242, 479, 540, 795, 1044
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
MboII	GAAGA	3 cut(s)	1150, 1153, 1214
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	3 cut(s)	80, 172, 685
MlsI	TGGCCA	1 cut(s)	1186
MluCI	AATT	5 cut(s)	6, 473, 717, 1259, 1321
MluNI	TGGCCA	1 cut(s)	1186
MlyI	GAGTC	2 cut(s)	203, 289
MmeI	TCCRAC	2 cut(s)	96, 212
Mox20I	TGGCCA	1 cut(s)	1186
MscI	TGGCCA	1 cut(s)	1186
MseI	TTAA	3 cut(s)	533, 863, 906
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	1186
MspA1I	CMGCKG	5 cut(s)	647, 674, 743, 869, 1244
MspCI	CTTAAG	1 cut(s)	905
MspR9I	CCNGG	2 cut(s)	369, 1188
MunI	CAATTG	1 cut(s)	473
Mva1269I	GAATGC	2 cut(s)	299, 1271
MvaI	CCWGG	2 cut(s)	369, 1188
MvnI	CGCG	2 cut(s)	593, 836
NcoI	CCATGG	2 cut(s)	198, 234
NdeII	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
NlaIV	GGNNCC	3 cut(s)	142, 224, 937
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	1169
NspI	RCATGY	3 cut(s)	269, 505, 1149
PagI	TCATGA	1 cut(s)	855
PciI	ACATGT	2 cut(s)	265, 1145
PctI	GAATGC	2 cut(s)	299, 1271
PfeI	GAWTC	4 cut(s)	103, 356, 977, 1306
PflFI	GACNNNGTC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	202, 288
PpsI	GAGTC	2 cut(s)	202, 288
Ppu21I	YACGTR	1 cut(s)	1293
PscI	ACATGT	2 cut(s)	265, 1145
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	367, 1186
PspGI	CCWGG	2 cut(s)	367, 1186
PspN4I	GGNNCC	3 cut(s)	142, 224, 937
PstI	CTGCAG	2 cut(s)	742, 829
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	240
PsyI	GACNNNGTC	1 cut(s)	193
PvuII	CAGCTG	4 cut(s)	647, 674, 869, 1244
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	533, 863, 906
Sau3AI	GATC	6 cut(s)	215, 240, 477, 538, 793, 1042
SchI	GAGTC	2 cut(s)	203, 289
ScrFI	CCNGG	2 cut(s)	369, 1188
SduI	GDGCHC	3 cut(s)	80, 172, 685
SfaNI	GCATC	3 cut(s)	743, 774, 1242
SfcI	CTRYAG	3 cut(s)	624, 738, 825
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	284, 905
SmoI	CTYRAG	2 cut(s)	284, 905
Sse9I	AATT	5 cut(s)	6, 473, 717, 1259, 1321
SsiI	CCGC	6 cut(s)	155, 158, 173, 593, 743, 1121
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	731
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	367, 1186
StyI	CCWWGG	3 cut(s)	198, 234, 1217
TaaI	ACNGT	2 cut(s)	404, 1169
TaiI	ACGT	1 cut(s)	1295
TaqI	TCGA	4 cut(s)	98, 106, 722, 768
TasI	AATT	5 cut(s)	6, 473, 717, 1259, 1321
TauI	GCSGC	3 cut(s)	158, 596, 746
TfiI	GAWTC	4 cut(s)	103, 356, 977, 1306
Tru1I	TTAA	3 cut(s)	533, 863, 906
Tru9I	TTAA	3 cut(s)	533, 863, 906
TscAI	CASTG	5 cut(s)	78, 409, 685, 954, 1055
TseFI	GTSAC	1 cut(s)	1169
Tsp45I	GTSAC	1 cut(s)	1169
TspDTI	ATGAA	5 cut(s)	423, 428, 434, 1118, 1315
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	5 cut(s)	78, 409, 685, 954, 1055
Tth111I	GACNNNGTC	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	905
XapI	RAATTY	3 cut(s)	717, 1259, 1321
XceI	RCATGY	3 cut(s)	269, 505, 1149
XcmI	CCANNNNNNNNNTGG	2 cut(s)	205, 946
XmiI	GTMKAC	1 cut(s)	1164
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.