Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Forward (+)

63836346 .. 63838619

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGTGTCAGTGAGCTCTTGTAGTTTGAAATGCTCGACGAATCGACATGGGTTGGAGAACATAGACGAAAATGGTGGCACCAGTATTGGAGCGGCGGGTTTATGTGCCCCGCCACCTGAAACTCCGACGGAGTCCATGGAGTTTCTGGCGAGATCATGGAGCCTCTCGGCCGTGGAGATCTCCAAAGCTCTTTCCCACTCACATGTTGCTTCTAAGAGTCTTGAGAATAAGTCAGCATTCTCTTGTGATGGTATTGCTGAAACTCGCCATTCAAGTTCCATGCGTTTGAGCGAATCATCTCTGCCTGGTGGAGTTAGCCCTCCGATTTCGCCAAGAAACAGTGATGAAATGAAGGAGTTGTTTTTACTACATCATGCACTTCATCCAGAGTTCCTTTCCAGTCAACAACAATTGATCAATAATGGGCTATACAAGAGCATGTTGAGAGGTAAAACAATGGGGAGATGGTTAAAAGATCAAAAGGAGAGAAAGAAGCAAGAAATGAGAAGCCAAAATGCCCAGTTGCACGCGGCAGTTTCTGTGGCTGGAGTTGCTGCTGCTGTAGCAGCACTCGCAGCTTCAGTTGCATTGCCTGAAACTGAAACATCAGCTGCCAGTGCCCACCACAAAGCAGCAGTATCCGAGAGGACTGAAATTTCGACTGCACTATCATCTGCAGCGGCTCTGGTAGCTTCACGCTGCATCGAGATTGCAGAGGAGATGGGAGCTGATCACGACCATATTCTATCAGTTGTCAGTTCTGCAGTTAACGCGAGGACTAATGGAGACATCATGACCTTAACAGCTGGAGCTGCCACAGCTTTACGAGGAGCTGCTACACTTAAGGTAAGGCTACAAAAGGAGTATGGAGGCACCACTTTTGCACTGGCTGAAGAAAAATGTGATGGAAAAGAATCAAACTCAGCATTGAACTTTGTCTCAAAAGGAGGGGAACTTCTGAAACGCACAAGGAAAGGCGATCTCCACTGGAAACAAGTTTCTTTCAACACCAACTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAACACATGGCGGGAACATTTACAAAGAAGAAGACATGTGTAGTCTCTGAAGTCTACTGTGACATAGCAGCCACACCAAGGGCATACTTTGGCATCAAAACAGCTGACAGGACAATAGAATTTGAATGCAGAAGTAAAAGGGACAAGCATACGTGGACTGAGGGGATTCAGAATATGTTGAATTTCATACCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

414

Amino Acids

44.43

Weight (kDa)

8.86

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	39 - 293	8.1e-87	Auxin canalisation
PH_2	PF08458	318 - 410	7.6e-35	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1015
AccB1I	GGYRCC	2 cut(s)	77, 872
AccBSI	CCGCTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	1101
AccII	CGCG	2 cut(s)	530, 773
AciI	CCGC	6 cut(s)	92, 95, 110, 530, 680, 1058
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	654, 1166, 1228
AcuI	CTGAAG	3 cut(s)	564, 912, 1116
AfiI	CCNNNNNNNGG	1 cut(s)	1125
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	2 cut(s)	202, 1082
AgsI	TTSAA	6 cut(s)	28, 273, 931, 1006, 1172, 1228
AjnI	CCWGG	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	3 cut(s)	780, 943, 1096
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	168
ApoI	RAATTY	3 cut(s)	654, 1166, 1228
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
BaeGI	GKGCMC	2 cut(s)	109, 622
BanI	GGYRCC	2 cut(s)	77, 872
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	1085
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	4 cut(s)	242, 459, 715, 899
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	2 cut(s)	414, 730
BcoDI	GTCTC	3 cut(s)	780, 943, 1096
BfmI	CTRYAG	3 cut(s)	561, 675, 762
BfrI	CTTAAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	1015
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	3 cut(s)	79, 161, 874
BmrFI	CCNGG	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	711, 1149
BmuI	ACTGGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	1085
BpmI	CTGGAG	2 cut(s)	567, 828
BpuEI	CTTGAG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	1200
BsaJI	CCNNGG	3 cut(s)	135, 171, 1124
Bsc4I	CCNNNNNNNGG	1 cut(s)	1125
Bse1I	ACTGG	6 cut(s)	81, 399, 520, 615, 891, 992
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	135, 171, 1124
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	1125
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	936, 1197
BseNI	ACTGG	6 cut(s)	81, 399, 520, 615, 891, 992
BseRI	GAGGAG	2 cut(s)	731, 843
BseSI	GKGCMC	2 cut(s)	109, 622
BseX3I	CGGCCG	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	2 cut(s)	530, 773
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	2 cut(s)	77, 872
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	1202
BslI	CCNNNNNNNGG	1 cut(s)	1125
BsmAI	GTCTC	3 cut(s)	780, 943, 1096
BsmFI	GGGAC	1 cut(s)	1202
BsmI	GAATGC	2 cut(s)	236, 1178
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	3 cut(s)	17, 109, 622
Bsp143I	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	6 cut(s)	92, 95, 110, 530, 680, 1058
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	935, 1198
BspFNI	CGCG	2 cut(s)	530, 773
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	3 cut(s)	79, 161, 874
BspMAI	CTGCAG	2 cut(s)	679, 766
BspMI	ACCTGC	1 cut(s)	1015
BspT107I	GGYRCC	2 cut(s)	77, 872
BspTI	CTTAAG	1 cut(s)	842
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	587
BsrI	ACTGG	6 cut(s)	81, 399, 520, 615, 891, 992
BssECI	CCNNGG	3 cut(s)	135, 171, 1124
BssMI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
BssT1I	CCWWGG	2 cut(s)	135, 1124
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	341, 1106
BstAFI	CTTAAG	1 cut(s)	842
BstBAI	YACGTR	1 cut(s)	1200
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	213, 922, 1206
BstDSI	CCRYGG	2 cut(s)	135, 171
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	530, 773
BstKTI	GATC	6 cut(s)	155, 180, 417, 478, 733, 982
BstMAI	GTCTC	3 cut(s)	780, 943, 1096
BstMBI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
BstMCI	CGRYCG	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	3 cut(s)	206, 442, 1086
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	3 cut(s)	561, 675, 762
BstSLI	GKGCMC	2 cut(s)	109, 622
BstUI	CGCG	2 cut(s)	530, 773
BstV2I	GAAGAC	1 cut(s)	1085
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	2 cut(s)	135, 171
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	5 cut(s)	15, 346, 622, 884, 985
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	792
DdeI	CTNAG	3 cut(s)	213, 922, 1206
DpnI	GATC	6 cut(s)	154, 179, 416, 477, 732, 981
DpnII	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	135, 1124
Eco24I	GRGCYC	1 cut(s)	17
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	3 cut(s)	564, 912, 1116
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	135, 1124
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	135, 1124
FaqI	GGGAC	1 cut(s)	1202
FauI	CCCGC	3 cut(s)	88, 117, 1051
FbaI	TGATCA	2 cut(s)	414, 730
FblI	GTMKAC	1 cut(s)	1101
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	17
GsuI	CTGGAG	2 cut(s)	567, 828
HaeIII	GGCC	1 cut(s)	170
HincII	GTYRAC	2 cut(s)	404, 769
HindII	GTYRAC	2 cut(s)	404, 769
HinfI	GANTC	6 cut(s)	40, 131, 217, 293, 914, 1213
HpaI	GTTAAC	1 cut(s)	769
Hpy166II	GTNNAC	4 cut(s)	404, 769, 1102, 1203
Hpy188I	TCNGA	6 cut(s)	126, 324, 643, 960, 1096, 1218
Hpy188III	TCNNGA	5 cut(s)	221, 386, 706, 734, 793
Hpy8I	GTNNAC	4 cut(s)	404, 769, 1102, 1203
Hpy99I	CGWCG	2 cut(s)	40, 130
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	341, 1106
HpyCH4IV	ACGT	1 cut(s)	1199
HpyF3I	CTNAG	3 cut(s)	213, 922, 1206
HpySE526I	ACGT	1 cut(s)	1199
Ksp22I	TGATCA	2 cut(s)	414, 730
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
LmnI	GCTCC	5 cut(s)	89, 159, 725, 809, 830
LweI	GCATC	2 cut(s)	711, 1149
MaeII	ACGT	1 cut(s)	1199
MaeIII	GTNAC	1 cut(s)	1106
MalI	GATC	6 cut(s)	154, 179, 416, 477, 732, 981
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
MboII	GAAGA	3 cut(s)	905, 1087, 1090
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	3 cut(s)	17, 109, 622
MluCI	AATT	4 cut(s)	410, 654, 1166, 1228
MlyI	GAGTC	2 cut(s)	140, 226
MmeI	TCCRAC	2 cut(s)	33, 149
MseI	TTAA	4 cut(s)	470, 768, 800, 843
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	4 cut(s)	611, 680, 806, 1151
MspCI	CTTAAG	1 cut(s)	842
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	2 cut(s)	236, 1178
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	2 cut(s)	530, 773
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
NlaIV	GGNNCC	3 cut(s)	79, 161, 874
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	1106
NspI	RCATGY	3 cut(s)	206, 442, 1086
PagI	TCATGA	1 cut(s)	792
PciI	ACATGT	2 cut(s)	202, 1082
PctI	GAATGC	2 cut(s)	236, 1178
PfeI	GAWTC	4 cut(s)	40, 293, 914, 1213
PflFI	GACNNNGTC	1 cut(s)	130
PleI	GAGTC	2 cut(s)	139, 225
PpsI	GAGTC	2 cut(s)	139, 225
Ppu21I	YACGTR	1 cut(s)	1200
PscI	ACATGT	2 cut(s)	202, 1082
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	79, 161, 874
PstI	CTGCAG	2 cut(s)	679, 766
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	130
PvuII	CAGCTG	3 cut(s)	611, 806, 1151
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	470, 768, 800, 843
Sau3AI	GATC	6 cut(s)	152, 177, 414, 475, 730, 979
SchI	GAGTC	2 cut(s)	140, 226
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	3 cut(s)	17, 109, 622
SfaNI	GCATC	2 cut(s)	711, 1149
SfcI	CTRYAG	3 cut(s)	561, 675, 762
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	221, 842
SmoI	CTYRAG	2 cut(s)	221, 842
Sse9I	AATT	4 cut(s)	410, 654, 1166, 1228
SsiI	CCGC	6 cut(s)	92, 95, 110, 530, 680, 1058
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	135, 1124
TaaI	ACNGT	2 cut(s)	341, 1106
TaiI	ACGT	1 cut(s)	1202
TaqI	TCGA	4 cut(s)	35, 43, 659, 705
TasI	AATT	4 cut(s)	410, 654, 1166, 1228
TauI	GCSGC	3 cut(s)	95, 533, 683
TfiI	GAWTC	4 cut(s)	40, 293, 914, 1213
Tru1I	TTAA	4 cut(s)	470, 768, 800, 843
Tru9I	TTAA	4 cut(s)	470, 768, 800, 843
TscAI	CASTG	5 cut(s)	15, 346, 622, 891, 992
TseFI	GTSAC	1 cut(s)	1106
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	5 cut(s)	360, 365, 371, 1055, 1222
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	5 cut(s)	15, 346, 622, 891, 992
Tth111I	GACNNNGTC	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	842
XapI	RAATTY	3 cut(s)	654, 1166, 1228
XceI	RCATGY	3 cut(s)	206, 442, 1086
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 883
XmiI	GTMKAC	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.