Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012583

Physical Location & Seq

Genomic Coordinates Reverse (-)

27797196 .. 27799352

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAAGCAGAGCAAGAACCCACAACAACAATGGAGCCCTTCCTCGAGAACTACACCTCGTACTTCTCACCTCGCGAGTTCGAAATCGCCGAAATCTTGGTCGGACTTCCTGACATCATCTCCCAATTAGACTCCCGACCCCGAATTCGGGTCCTGTGGGGCCACAAGAAGAAGAGATCTGTTCTCTCTGTACAAGACCAAAAACCGACCAAGAAGTCGTCCACTGTGGTTAGGCTTCGGTTGCCGTCTTCCCCGAATCCTGCGCCGAAAATTCCGGCCACTAATGTTGTCAAGGTTGAGAGGTCGAGCCCCAACACGCCGCTGTCGTTTGAGTCAGAGGAGAAGCCTCCTGGTCAGTTGAGAAGTAGAGTGGTCTCCGTGAAGAGGAAAAGAGAAGAATGGCTGGAGGTGATAGATGGATTATCAAAGCGCAAAGAATTGCTACAAAAAGAGATACAGAATGTGAAGGATTATAAAGAAAAGCTGATTAATTTTAATTTGGTATTGCAATCAAGGAATCAAGAGCTAAAGAAGCAAAGATTGATTCAGGAAGAAGCTCAATTGAAAATTGAGGAACAAAACTTGAATCTTGATATGCAATTAGGCCAACCCACACTCGTACCAACCTCCATAGTCATTTGTGCGCCTACAGTTGTTAAACAAGAGCATTATCATCAACAAATTGCTCCTCATCAGTATCAAATGCAGATCATGGATCACACGGCTCAAACTCGAAGCGCAGTAATTAGTGAGAATCATGGGTGTCGAGCATCAAACACTCAAATGGCCTCAACCAATGGAGTGAGATTGGTAAGCTGCAATAACATGGGAGGCTCAATGCTTGTCCCTGATTGCAGCTTTTCTTTTCTTAACCAGAATCATAGCTCCTCTTTGGCTACCAAGAATCTCTATAAGGCTATGTCTGCACAAAGAAGGCAGGAGAGATATCAGAAAAATAGGGTTAAAAAAACCTCTATTTTAGGTCAAAGGCAGAGTCAAGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

38.4

Weight (kDa)

9.71

Isoelectric Point (pI)

61.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38410
malus_domestica	MD08G1012900.v1.1 MD15G1011900.v1.1
prunus_persica	Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1
pyrus_communis	pycom08g01100 pycom15g01050
rosa_chinensis	RchiOBHm_Chr6g0302891
rosa_laevigata	RLG00000011126
rosa_multiflora	Rmu_ssc0000460.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165180
rosa_rugosa	Rorug06G0317900
rosa_samantha	Rh6AG431500 Rh6BG471100 Rh6CG443900 Rh6DG430700
rosa_wichuraiana	Rw6G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AasI	GACNNNNNNGTC	1 cut(s)	214
AccII	CGCG	1 cut(s)	75
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	144, 270
AfaI	GTAC	3 cut(s)	62, 192, 621
AfiI	CCNNNNNNNGG	3 cut(s)	147, 148, 384
AgsI	TTSAA	2 cut(s)	565, 586
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	6 cut(s)	484, 526, 557, 816, 858, 885
AluI	AGCT	6 cut(s)	484, 526, 557, 816, 858, 885
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	723
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	4 cut(s)	160, 276, 604, 786
ApeKI	GCWGC	2 cut(s)	816, 855
ApoI	RAATTY	2 cut(s)	144, 270
ArsI	GACNNNNNNTTYG	5 cut(s)	84, 116, 129, 161, 979
AseI	ATTAAT	1 cut(s)	489
AspLEI	GCGC	4 cut(s)	265, 432, 646, 740
AspS9I	GGNCC	2 cut(s)	151, 160
AsuHPI	GGTGA	2 cut(s)	60, 421
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BanII	GRGCYC	2 cut(s)	39, 311
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	803, 867
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	229, 738
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	1006
BfmI	CTRYAG	1 cut(s)	648
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	3 cut(s)	320, 817, 856
BlsI	GCNGC	3 cut(s)	321, 818, 857
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	151, 160
BmiI	GGNNCC	3 cut(s)	36, 152, 161
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	779
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 148, 384
BseBI	CCWGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	147, 148, 384
BseRI	GAGGAG	3 cut(s)	353, 678, 877
BseXI	GCAGC	2 cut(s)	803, 867
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	162, 278, 606, 788
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	3 cut(s)	147, 148, 384
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	830
BsnI	GGCC	4 cut(s)	162, 278, 606, 788
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	39, 311
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	176, 708, 715
Bsp68I	TCGCGA	1 cut(s)	75
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	4 cut(s)	162, 278, 606, 788
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	36, 152, 161
BspPI	GGATC	1 cut(s)	723
BspT104I	TTCGAA	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	190
BssMI	GATC	3 cut(s)	176, 708, 715
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	226, 652
Bst6I	CTCTTC	2 cut(s)	167, 377
BstAUI	TGTACA	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	4 cut(s)	265, 432, 646, 740
BstKTI	GATC	3 cut(s)	179, 711, 718
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	3 cut(s)	176, 708, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 532, 923
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	803, 867
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	162, 278, 606, 788
BtsIMutI	CAGTG	1 cut(s)	222
BtuMI	TCGCGA	1 cut(s)	75
CfoI	GCGC	4 cut(s)	265, 432, 646, 740
Cfr13I	GGNCC	2 cut(s)	151, 160
Csp6I	GTAC	3 cut(s)	61, 191, 620
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	3 cut(s)	712, 758, 826
CviQI	GTAC	3 cut(s)	61, 191, 620
DpnI	GATC	3 cut(s)	178, 710, 717
DpnII	GATC	3 cut(s)	176, 708, 715
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	167, 377
EarI	CTCTTC	2 cut(s)	167, 377
Eco24I	GRGCYC	2 cut(s)	39, 311
Eco31I	GGTCTC	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	947
EcoT38I	GRGCYC	2 cut(s)	39, 311
FaeI	CATG	3 cut(s)	715, 761, 829
FaiI	YATR	9 cut(s)	474, 596, 632, 713, 759, 827, 882, 912, 920
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	3 cut(s)	711, 757, 825
Fnu4HI	GCNGC	3 cut(s)	320, 817, 856
FriOI	GRGCYC	2 cut(s)	39, 311
Fsp4HI	GCNGC	3 cut(s)	320, 817, 856
FspBI	CTAG	1 cut(s)	1006
GlaI	GCGC	4 cut(s)	264, 431, 645, 739
GluI	GCNGC	3 cut(s)	320, 817, 856
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	4 cut(s)	162, 278, 606, 788
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	4 cut(s)	265, 432, 646, 740
Hin1II	CATG	3 cut(s)	715, 761, 829
Hin6I	GCGC	4 cut(s)	263, 430, 644, 738
HinP1I	GCGC	4 cut(s)	263, 430, 644, 738
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	60, 421
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	104, 337, 951
Hpy188III	TCNNGA	8 cut(s)	46, 74, 110, 135, 521, 548, 590, 998
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	49, 460, 927
HpyCH4III	ACNGT	2 cut(s)	226, 652
HpyCH4V	TGCA	6 cut(s)	508, 598, 706, 819, 855, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 532, 923
Hsp92II	CATG	3 cut(s)	715, 761, 829
HspAI	GCGC	4 cut(s)	263, 430, 644, 738
Kzo9I	GATC	3 cut(s)	176, 708, 715
LmnI	GCTCC	3 cut(s)	34, 691, 890
Lsp1109I	GCAGC	2 cut(s)	803, 867
LweI	GCATC	1 cut(s)	779
MaeI	CTAG	1 cut(s)	1006
MalI	GATC	3 cut(s)	178, 710, 717
MboI	GATC	3 cut(s)	176, 708, 715
MboII	GAAGA	6 cut(s)	181, 184, 240, 394, 407, 563
MfeI	CAATTG	1 cut(s)	560
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	39, 311
MlyI	GAGTC	3 cut(s)	125, 341, 1003
MmeI	TCCRAC	1 cut(s)	82
MseI	TTAA	5 cut(s)	489, 495, 657, 870, 963
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	241, 532, 923
NdeII	GATC	3 cut(s)	176, 708, 715
NlaIII	CATG	3 cut(s)	715, 761, 829
NlaIV	GGNNCC	3 cut(s)	36, 152, 161
NruI	TCGCGA	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 323
PfeI	GAWTC	7 cut(s)	256, 517, 544, 586, 754, 877, 904
PkrI	GCNGC	3 cut(s)	321, 818, 857
PleI	GAGTC	3 cut(s)	125, 340, 1002
PpsI	GAGTC	3 cut(s)	125, 340, 1002
PpuMI	RGGWCCY	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	36, 152, 161
PspPI	GGNCC	2 cut(s)	151, 160
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	176
RruI	TCGCGA	1 cut(s)	75
RsaI	GTAC	3 cut(s)	62, 192, 621
RsaNI	GTAC	3 cut(s)	61, 191, 620
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	5 cut(s)	489, 495, 657, 870, 963
SatI	GCNGC	3 cut(s)	320, 817, 856
Sau3AI	GATC	3 cut(s)	176, 708, 715
Sau96I	GGNCC	2 cut(s)	151, 160
SchI	GAGTC	3 cut(s)	125, 341, 1003
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	39, 311
SfaNI	GCATC	1 cut(s)	779
SfcI	CTRYAG	1 cut(s)	648
Sfr274I	CTCGAG	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	1006
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	226, 652
TaqI	TCGA	5 cut(s)	45, 81, 305, 733, 766
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	7 cut(s)	256, 517, 544, 586, 754, 877, 904
Tru1I	TTAA	5 cut(s)	489, 495, 657, 870, 963
Tru9I	TTAA	5 cut(s)	489, 495, 657, 870, 963
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	2 cut(s)	816, 855
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	144, 270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.