Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012583

Physical Location & Seq

Genomic Coordinates Reverse (-)

33521063 .. 33523187

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G364900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAACAGAGCGAAACAATGGTTATGGAACAGAGGGAACTCTTCCCTTGTTCTCCAAACCCCAGTGTGAGTGAGATGGAGGTCGCTGATATCTTGCTTCAGCTTCCTGATATGATCTACCAATTTGAGTCTCCTCTTCCAATTCCACTCTCGCTCGGCTGGGGATGTAAAAGCAAGAGATCTGCACTTGCTGTGAAAAACGACCACGCCTCAACTCTGCAGCGCCTGCGTCATCTTGGTCTGCCACCGTGTTGGAGTAAACTACTACGGTGTTGTTTTACTCCCAAGTCTTTGGCCAAGAGTCCTGTACCACTTCTCTCTAATGCTATTAAGGTTGAAACTTCGAGCCCTGATACGCCGCTCTCCTTCGAGCCCAGTGAATCCGACGACAAGCCTCAGCAATTGAGAAGAAGAGTTCTCGGTAAAAGGAAGAGGGAGGAATGGAGTAAGATTATAGACGAACTGACTGAGGAGAAAGAATCGGTGCAATTGGAATTACAGAAGGTGGAGCGTCATTATGTCGACCTGAATGATTTTAATTTGGAGTTGAAAGCAATGAAAGAGAAGCTAATGGGACTTGGCCATAAACAGGAGGAAGAGTCCCGTTTGGGAATTGATCCGAGCTTGAATAATGCAGTGGTGCCATTATGCCAACCAGCCCAACAATCTCCCCCTGTTGCTGCTGCTGCTGCTGCTGCTGCAAATCAAGATCAGTATCATCAACAACATCGTGAGCAAATTCATCCTCCTCCTAGCGTGATGCATTATCAACATCAACTGCAGCTCATCATGGATCAGACGGCTCAAACTCAAAGAAGAGAAATCTGTGAGAATCTGAGGTACGGGTACCCATCTAATTCTTCTACTCAAGGGCCCTCCTCAATCTCGTTGGCATCCAGCGGCGGCAGTGCAAGTGGATTGATGAGGATGGTCAATTGCAACAACAATGTGGTGGGCCCACGTGGTCTCAACCTTTGCTTTAAGAATACAATCGTGATGAGCTCTTCCCAACCGTACGATCTTACCTTGGTTAACAGCACTAGGTTTGTGGCAGCTCAGAACAGACAGAAGAGACTTGAGTACTGCAGGCTTAAGAGACCTCGCTTCGCTACCACTTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

42.17

Weight (kDa)

8.62

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38410
malus_domestica	MD08G1012900.v1.1 MD15G1011900.v1.1
prunus_persica	Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1
pyrus_communis	pycom08g01100 pycom15g01050
rosa_chinensis	RchiOBHm_Chr6g0302891
rosa_laevigata	RLG00000011126
rosa_multiflora	Rmu_ssc0000460.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165180
rosa_rugosa	Rorug06G0317900
rosa_samantha	Rh6AG431500 Rh6BG471100 Rh6CG443900 Rh6DG430700
rosa_wichuraiana	Rw6G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	846
AccB1I	GGYRCC	2 cut(s)	640, 846
AccBSI	CCGCTC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	3 cut(s)	359, 900, 903
AclWI	GGATC	2 cut(s)	611, 801
AcoI	YGGCCR	2 cut(s)	294, 580
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	83
AcvI	CACGTG	1 cut(s)	962
AfaI	GTAC	5 cut(s)	309, 842, 848, 1016, 1082
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflII	CTTAAG	1 cut(s)	1091
AgsI	TTSAA	3 cut(s)	338, 550, 628
AluBI	AGCT	6 cut(s)	103, 568, 624, 784, 1002, 1055
AluI	AGCT	6 cut(s)	103, 568, 624, 784, 1002, 1055
Alw21I	GWGCWC	1 cut(s)	1004
Alw26I	GTCTC	4 cut(s)	135, 971, 1066, 1090
AlwI	GGATC	2 cut(s)	611, 801
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	4 cut(s)	294, 580, 872, 955
ApaI	GGGCCC	2 cut(s)	876, 959
ApoI	RAATTY	1 cut(s)	738
Asp718I	GGTACC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	872, 873, 955, 956
BaeGI	GKGCMC	2 cut(s)	876, 959
BalI	TGGCCA	2 cut(s)	296, 582
BanI	GGYRCC	2 cut(s)	640, 846
BanII	GRGCYC	5 cut(s)	350, 375, 876, 959, 1004
BbrPI	CACGTG	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	1004
BbvCI	CCTCAGC	1 cut(s)	396
BccI	CCATC	3 cut(s)	70, 859, 922
BceAI	ACGGC	1 cut(s)	816
BcoDI	GTCTC	4 cut(s)	135, 971, 1066, 1090
BfaI	CTAG	2 cut(s)	753, 1041
BfmI	CTRYAG	3 cut(s)	218, 779, 1084
BfoI	RGCGCY	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	1091
BglII	AGATCT	1 cut(s)	179
BmcAI	AGTACT	1 cut(s)	1082
BmgT120I	GGNCC	4 cut(s)	872, 873, 955, 956
BmiI	GGNNCC	4 cut(s)	642, 848, 874, 957
BmrI	ACTGGG	2 cut(s)	57, 369
BmsI	GCATC	2 cut(s)	750, 902
BmuI	ACTGGG	2 cut(s)	57, 369
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	852, 1097
BsaAI	YACGTR	1 cut(s)	962
BsaBI	GATNNNNATC	1 cut(s)	714
BsaI	GGTCTC	2 cut(s)	971, 1090
BsaJI	CCNNGG	1 cut(s)	1026
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	63, 375
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	1026
BseGI	GGATG	4 cut(s)	170, 742, 893, 933
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	4 cut(s)	410, 459, 827, 1070
BseNI	ACTGG	2 cut(s)	63, 375
BseRI	GAGGAG	4 cut(s)	123, 485, 738, 868
BseSI	GKGCMC	2 cut(s)	876, 959
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	296, 582, 874, 957
BshNI	GGYRCC	2 cut(s)	640, 846
BsiHKAI	GWGCWC	1 cut(s)	1004
BsiWI	CGTACG	1 cut(s)	1014
BslFI	GGGAC	2 cut(s)	586, 588
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	4 cut(s)	135, 971, 1066, 1090
BsmFI	GGGAC	2 cut(s)	586, 588
BsnI	GGCC	4 cut(s)	296, 582, 874, 957
Bso31I	GGTCTC	2 cut(s)	971, 1090
Bsp120I	GGGCCC	2 cut(s)	872, 955
Bsp1286I	GDGCHC	5 cut(s)	350, 375, 876, 959, 1004
Bsp143I	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
BspACI	CCGC	3 cut(s)	359, 900, 903
BspANI	GGCC	4 cut(s)	296, 582, 874, 957
BspCNI	CTCAG	4 cut(s)	409, 460, 828, 1069
BspLI	GGNNCC	4 cut(s)	642, 848, 874, 957
BspMAI	CTGCAG	3 cut(s)	222, 783, 1088
BspPI	GGATC	2 cut(s)	611, 801
BspQI	GCTCTTC	1 cut(s)	1009
BspT107I	GGYRCC	2 cut(s)	640, 846
BspTI	CTTAAG	1 cut(s)	1091
BspTNI	GGTCTC	2 cut(s)	971, 1090
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	63, 375
BssECI	CCNNGG	1 cut(s)	1026
BssMI	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
BssT1I	CCWWGG	1 cut(s)	1026
Bst4CI	ACNGT	3 cut(s)	249, 270, 1014
Bst6I	CTCTTC	8 cut(s)	47, 141, 406, 425, 591, 811, 1009, 1064
BstAFI	CTTAAG	1 cut(s)	1091
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	962
BstC8I	GCNNGC	2 cut(s)	227, 1088
BstDEI	CTNAG	4 cut(s)	396, 468, 836, 1056
BstF5I	GGATG	4 cut(s)	170, 742, 893, 933
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	6 cut(s)	117, 182, 619, 712, 796, 1021
BstMAI	GTCTC	4 cut(s)	135, 971, 1066, 1090
BstMBI	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 686, 689, 692, 695, 698
BstSFI	CTRYAG	3 cut(s)	218, 779, 1084
BstSLI	GKGCMC	2 cut(s)	876, 959
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	2 cut(s)	252, 292
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	296, 582, 874, 957
BtsCI	GGATG	4 cut(s)	170, 742, 893, 933
BtsI	GCAGTG	2 cut(s)	642, 913
BtsIMutI	CAGTG	4 cut(s)	70, 382, 642, 913
Cac8I	GCNNGC	2 cut(s)	227, 1088
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	4 cut(s)	872, 873, 955, 956
CseI	GACGC	2 cut(s)	218, 500
Csp6I	GTAC	5 cut(s)	308, 841, 847, 1015, 1081
CviAII	CATG	1 cut(s)	790
CviQI	GTAC	5 cut(s)	308, 841, 847, 1015, 1081
DdeI	CTNAG	4 cut(s)	396, 468, 836, 1056
DpnI	GATC	6 cut(s)	116, 181, 618, 711, 795, 1020
DpnII	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
EaeI	YGGCCR	2 cut(s)	294, 580
Eam1104I	CTCTTC	8 cut(s)	47, 141, 406, 425, 591, 811, 1009, 1064
EarI	CTCTTC	8 cut(s)	47, 141, 406, 425, 591, 811, 1009, 1064
Ecl136II	GAGCTC	1 cut(s)	1002
Eco130I	CCWWGG	1 cut(s)	1026
Eco24I	GRGCYC	5 cut(s)	350, 375, 876, 959, 1004
Eco31I	GGTCTC	2 cut(s)	971, 1090
Eco32I	GATATC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	1002
Eco57I	CTGAAG	1 cut(s)	83
Eco72I	CACGTG	1 cut(s)	962
EcoICRI	GAGCTC	1 cut(s)	1002
EcoO109I	RGGNCCY	2 cut(s)	872, 873
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT22I	ATGCAT	1 cut(s)	765
EcoT38I	GRGCYC	5 cut(s)	350, 375, 876, 959, 1004
ErhI	CCWWGG	1 cut(s)	1026
FaeI	CATG	1 cut(s)	793
FaiI	YATR	7 cut(s)	26, 113, 455, 519, 585, 649, 791
FaqI	GGGAC	2 cut(s)	586, 588
FatI	CATG	1 cut(s)	789
FblI	GTMKAC	1 cut(s)	522
FokI	GGATG	4 cut(s)	177, 729, 880, 940
FriOI	GRGCYC	5 cut(s)	350, 375, 876, 959, 1004
FspBI	CTAG	2 cut(s)	753, 1041
GlaI	GCGC	1 cut(s)	224
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	296, 582, 874, 957
HgaI	GACGC	2 cut(s)	218, 500
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	793
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	2 cut(s)	523, 1033
HindII	GTYRAC	2 cut(s)	523, 1033
HinfI	GANTC	6 cut(s)	128, 301, 380, 479, 599, 832
HpaI	GTTAAC	1 cut(s)	1033
Hpy166II	GTNNAC	3 cut(s)	260, 523, 1033
Hpy188I	TCNGA	5 cut(s)	385, 621, 798, 837, 1059
Hpy188III	TCNNGA	4 cut(s)	107, 707, 731, 994
Hpy8I	GTNNAC	3 cut(s)	260, 523, 1033
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	376, 496
HpyCH4III	ACNGT	3 cut(s)	249, 270, 1014
HpyCH4IV	ACGT	1 cut(s)	961
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 686, 689, 692, 695, 698
HpyF3I	CTNAG	4 cut(s)	396, 468, 836, 1056
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	1 cut(s)	793
HspAI	GCGC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	850
KspAI	GTTAAC	1 cut(s)	1033
Kzo9I	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
LguI	GCTCTTC	1 cut(s)	1009
LmnI	GCTCC	1 cut(s)	508
LweI	GCATC	2 cut(s)	750, 902
MaeI	CTAG	2 cut(s)	753, 1041
MaeII	ACGT	1 cut(s)	961
MalI	GATC	6 cut(s)	116, 181, 618, 711, 795, 1020
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
MfeI	CAATTG	3 cut(s)	401, 488, 934
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	5 cut(s)	350, 375, 876, 959, 1004
MlsI	TGGCCA	2 cut(s)	296, 582
MluNI	TGGCCA	2 cut(s)	296, 582
MlyI	GAGTC	3 cut(s)	137, 310, 608
MmeI	TCCRAC	2 cut(s)	233, 408
Mox20I	TGGCCA	2 cut(s)	296, 582
Mph1103I	ATGCAT	1 cut(s)	765
MscI	TGGCCA	2 cut(s)	296, 582
MseI	TTAA	6 cut(s)	330, 537, 981, 1032, 1092, 1118
Msp20I	TGGCCA	2 cut(s)	296, 582
MspA1I	CMGCKG	1 cut(s)	900
MspCI	CTTAAG	1 cut(s)	1091
MunI	CAATTG	3 cut(s)	401, 488, 934
MwoI	GCNNNNNNNGC	6 cut(s)	226, 686, 689, 692, 695, 698
NdeII	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	4 cut(s)	642, 848, 874, 957
NmeAIII	GCCGAG	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	1009
PfeI	GAWTC	3 cut(s)	380, 479, 832
Pfl23II	CGTACG	1 cut(s)	1014
PleI	GAGTC	3 cut(s)	136, 309, 607
PmaCI	CACGTG	1 cut(s)	962
PmlI	CACGTG	1 cut(s)	962
PpsI	GAGTC	3 cut(s)	136, 309, 607
Ppu21I	YACGTR	1 cut(s)	962
Psp124BI	GAGCTC	1 cut(s)	1004
PspCI	CACGTG	1 cut(s)	962
PspFI	CCCAGC	1 cut(s)	159
PspLI	CGTACG	1 cut(s)	1014
PspN4I	GGNNCC	4 cut(s)	642, 848, 874, 957
PspOMI	GGGCCC	2 cut(s)	872, 955
PspPI	GGNCC	4 cut(s)	872, 873, 955, 956
PstI	CTGCAG	3 cut(s)	222, 783, 1088
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	5 cut(s)	309, 842, 848, 1016, 1082
RsaNI	GTAC	5 cut(s)	308, 841, 847, 1015, 1081
SacI	GAGCTC	1 cut(s)	1004
SalI	GTCGAC	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	1009
SaqAI	TTAA	6 cut(s)	330, 537, 981, 1032, 1092, 1118
Sau3AI	GATC	6 cut(s)	114, 179, 616, 709, 793, 1018
Sau96I	GGNCC	4 cut(s)	872, 873, 955, 956
ScaI	AGTACT	1 cut(s)	1082
SchI	GAGTC	3 cut(s)	137, 310, 608
SduI	GDGCHC	5 cut(s)	350, 375, 876, 959, 1004
SfaNI	GCATC	2 cut(s)	750, 902
SfcI	CTRYAG	3 cut(s)	218, 779, 1084
SmlI	CTYRAG	3 cut(s)	867, 1076, 1091
SmoI	CTYRAG	3 cut(s)	867, 1076, 1091
SsiI	CCGC	3 cut(s)	359, 900, 903
SspMI	CTAG	2 cut(s)	753, 1041
SstI	GAGCTC	1 cut(s)	1004
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	3 cut(s)	249, 270, 1014
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	3 cut(s)	344, 369, 522
TatI	WGTACW	1 cut(s)	1080
TauI	GCSGC	3 cut(s)	361, 903, 906
TfiI	GAWTC	3 cut(s)	380, 479, 832
Tru1I	TTAA	6 cut(s)	330, 537, 981, 1032, 1092, 1118
Tru9I	TTAA	6 cut(s)	330, 537, 981, 1032, 1092, 1118
TscAI	CASTG	4 cut(s)	70, 382, 642, 913
TspDTI	ATGAA	2 cut(s)	572, 731
TspRI	CASTG	4 cut(s)	70, 382, 642, 913
Vha464I	CTTAAG	1 cut(s)	1091
XapI	RAATTY	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	753, 1041
ZrmI	AGTACT	1 cut(s)	1082
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.