Rh6DG430700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012583
Physical Location & Seq
Forward (+)
61003775 .. 61006075
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG430700.1

Sequence Viewer

Length: 1023 bp
ATGGAAGCAGAGCAGCAAGGACCAACAACAATGGAGCCCATCCTCGGCTACTACACCTCGTACTTCTCACCTCGGGAGTTCGAAATCGCCGAAATCATGGTCGGACTTCCTGATATCATCTCCGAATTAGACGACCGCCCTCGAATTCGGGTCCCGTGGGGCCACAAGAAGAAGAGATCTGCGCTGGCTGTACAAGACCAAAGAGTTCGGAACAACAAGTCTTCGTCCTCGACTGTGCTTCGGCTTCGGTTGCCGTCGTCCTCGTCTTCCCCGAATCCTGGGTCGAAAGTTCCGGCCACTAATGTTGTCAAGGTCGAGAGGTCGAGCCCCAACACGCCGCTGTCGTTTGAATCCGATGAGAAGCCTAGTCAGTTGAGAAGTAAAGTGGTGGTCGGAAAGAGGAAAAGAGAGGAATGGCTGGAGGCGATAAATGGACTAGTGAAGCGCAAAGAATTGCTACATAAAGAGATACAGAATGTGAAGGATTATAAAGAAAAGCTGATTAAATTTAATTTGGTATTGCAGTCAAGGAAGCAAGAGCTGAAAAAGCAAAGATTGATTCAGAAAGAACCTCAATCGAAAATTGAGGAACCAAAGCTGAATCTTGATATGAAATTGGGCCAACCCACGCCCATACAAACATCCATAGTCATTTGTGCCCCTACGATTGTTGAACAAGAGCGTTATCATCAACTAAGTGCTCCTCATCAGTATCAAACCCTGGATCACACCGCTCAAACTCGAGGCGCAGTAATTATTGAGAATCATGGGTATCTATCATCTACTACTCAAGTGGCCTCAACCTCTTTGCCATCTAACAGTGTCGATGCTACTGGATTGAGATTGGTAAGCTACAATCCTGATCACGGCTTTTCTTCTTTTCCTAACCAGAATCGTGGCTCCGCCTTTGTTACCAAGAATCTCTATAAGGCTGTGTCTGCACAAAGAAGGCATGAGAGATATCAGAAAAATAGGGTTAAAAAAACCTCTCTTTTAGGTCAAAGACAGAGTCAAGAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.66

Weight (kDa)

9.88

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 734
AciI CCGC 4 cut(s) 136, 338, 732, 903
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 144, 506
AfaI GTAC 2 cut(s) 62, 192
AfiI CCNNNNNNNGG 3 cut(s) 44, 278, 866
AgsI TTSAA 2 cut(s) 350, 674
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 2 cut(s) 277, 720
AluBI AGCT 4 cut(s) 499, 541, 598, 852
AluI AGCT 4 cut(s) 499, 541, 598, 852
Alw21I GWGCWC 1 cut(s) 703
AlwI GGATC 1 cut(s) 732
Ama87I CYCGRG 2 cut(s) 72, 741
AoxI GGCC 4 cut(s) 160, 294, 619, 795
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 144, 506
ArsI GACNNNNNNTTYG 5 cut(s) 84, 116, 266, 298, 994
AspLEI GCGC 3 cut(s) 184, 447, 749
AspS9I GGNCC 4 cut(s) 20, 151, 160, 619
AsuHPI GGTGA 1 cut(s) 60
AsuII TTCGAA 1 cut(s) 81
AvaI CYCGRG 2 cut(s) 72, 741
AvaII GGWCC 2 cut(s) 20, 151
BaeGI GKGCMC 1 cut(s) 661
BanII GRGCYC 2 cut(s) 39, 329
BbsI GAAGAC 2 cut(s) 213, 258
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 47, 820
BceAI ACGGC 2 cut(s) 238, 883
BciT130I CCWGG 2 cut(s) 279, 722
BclI TGATCA 1 cut(s) 862
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 2 cut(s) 366, 437
BglII AGATCT 1 cut(s) 176
BisI GCNGC 2 cut(s) 14, 338
BlsI GCNGC 2 cut(s) 15, 339
Bme1390I CCNGG 2 cut(s) 279, 722
Bme18I GGWCC 2 cut(s) 20, 151
BmeT110I CYCGRG 2 cut(s) 72, 741
BmgT120I GGNCC 4 cut(s) 20, 151, 160, 619
BmiI GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
BmrFI CCNGG 2 cut(s) 279, 722
BmsI GCATC 1 cut(s) 817
BpiI GAAGAC 2 cut(s) 213, 258
BpmI CTGGAG 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 278, 866
Bse1I ACTGG 1 cut(s) 838
BseBI CCWGG 2 cut(s) 279, 722
BseDI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BseGI GGATG 2 cut(s) 39, 641
BseLI CCNNNNNNNGG 3 cut(s) 44, 278, 866
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 924
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 162, 296, 621, 797
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 703
BsiHKCI CYCGRG 2 cut(s) 72, 741
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 44, 278, 866
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 4 cut(s) 162, 296, 621, 797
BsoBI CYCGRG 2 cut(s) 72, 741
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 39, 329, 661, 703
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 176, 724, 862
BspACI CCGC 4 cut(s) 136, 338, 732, 903
BspANI GGCC 4 cut(s) 162, 296, 621, 797
BspLI GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 734
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BssMI GATC 3 cut(s) 176, 724, 862
Bst2UI CCWGG 2 cut(s) 279, 722
Bst4CI ACNGT 2 cut(s) 235, 821
Bst6I CTCTTC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 39, 641
BstHHI GCGC 3 cut(s) 184, 447, 749
BstKTI GATC 3 cut(s) 179, 727, 865
BstMBI GATC 3 cut(s) 176, 724, 862
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 250, 547, 938
BstNI CCWGG 2 cut(s) 279, 722
BstSCI CCNGG 2 cut(s) 277, 720
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 2 cut(s) 213, 258
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 4 cut(s) 162, 296, 621, 797
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 39, 641
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 3 cut(s) 184, 447, 749
Cfr13I GGNCC 4 cut(s) 20, 151, 160, 619
Csp6I GTAC 2 cut(s) 61, 191
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 97, 767, 953
CviQI GTAC 2 cut(s) 61, 191
DdeI CTNAG 1 cut(s) 695
DpnI GATC 3 cut(s) 178, 726, 864
DpnII GATC 3 cut(s) 176, 724, 862
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 892
Eco24I GRGCYC 2 cut(s) 39, 329
Eco32I GATATC 2 cut(s) 115, 962
Eco47I GGWCC 2 cut(s) 20, 151
Eco88I CYCGRG 2 cut(s) 72, 741
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 277, 720
EcoRV GATATC 2 cut(s) 115, 962
EcoT38I GRGCYC 2 cut(s) 39, 329
FaeI CATG 3 cut(s) 100, 770, 956
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 96, 766, 952
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 2 cut(s) 14, 338
FokI GGATG 2 cut(s) 26, 628
FriOI GRGCYC 2 cut(s) 39, 329
Fsp4HI GCNGC 2 cut(s) 14, 338
FspBI CTAG 2 cut(s) 366, 437
GlaI GCGC 3 cut(s) 183, 446, 748
GluI GCNGC 2 cut(s) 14, 338
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 4 cut(s) 162, 296, 621, 797
HapII CCGG 1 cut(s) 293
HhaI GCGC 3 cut(s) 184, 447, 749
Hin1II CATG 3 cut(s) 100, 770, 956
Hin6I GCGC 3 cut(s) 182, 445, 747
HinP1I GCGC 3 cut(s) 182, 445, 747
HinfI GANTC 8 cut(s) 274, 350, 559, 601, 763, 892, 919, 1009
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 7 cut(s) 104, 124, 210, 355, 395, 564, 966
Hpy188III TCNNGA 6 cut(s) 74, 110, 316, 605, 860, 1013
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 475, 942
HpyCH4III ACNGT 2 cut(s) 235, 821
HpyCH4V TGCA 2 cut(s) 523, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 547, 938
HpyF3I CTNAG 1 cut(s) 695
Hsp92II CATG 3 cut(s) 100, 770, 956
HspAI GCGC 3 cut(s) 182, 445, 747
KflI GGGWCCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 3 cut(s) 176, 724, 862
LmnI GCTCC 3 cut(s) 34, 706, 905
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 817
MaeI CTAG 2 cut(s) 366, 437
MaeIII GTNAC 1 cut(s) 910
MalI GATC 3 cut(s) 178, 726, 864
MbiI CCGCTC 1 cut(s) 734
MboI GATC 3 cut(s) 176, 724, 862
MboII GAAGA 5 cut(s) 181, 184, 213, 258, 867
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 39, 329, 661, 703
MluCI AATT 8 cut(s) 125, 144, 452, 506, 511, 582, 614, 753
MlyI GAGTC 1 cut(s) 1018
MmeI TCCRAC 2 cut(s) 82, 373
MseI TTAA 3 cut(s) 504, 510, 978
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 279, 722
MvaI CCWGG 2 cut(s) 279, 722
MwoI GCNNNNNNNGC 3 cut(s) 250, 547, 938
NdeII GATC 3 cut(s) 176, 724, 862
NlaIII CATG 3 cut(s) 100, 770, 956
NlaIV GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
NmeAIII GCCGAG 1 cut(s) 24
NspV TTCGAA 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 741
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 269, 341
PfeI GAWTC 7 cut(s) 274, 350, 559, 601, 763, 892, 919
PflFI GACNNNGTC 1 cut(s) 1008
PkrI GCNGC 2 cut(s) 15, 339
PleI GAGTC 1 cut(s) 1017
PpsI GAGTC 1 cut(s) 1017
PpuMI RGGWCCY 1 cut(s) 151
PsiI TTATAA 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 277, 720
PspGI CCWGG 2 cut(s) 277, 720
PspN4I GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
PspPI GGNCC 4 cut(s) 20, 151, 160, 619
PspPPI RGGWCCY 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 741
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 1008
RsaI GTAC 2 cut(s) 62, 192
RsaNI GTAC 2 cut(s) 61, 191
SaqAI TTAA 3 cut(s) 504, 510, 978
SatI GCNGC 2 cut(s) 14, 338
Sau3AI GATC 3 cut(s) 176, 724, 862
Sau96I GGNCC 4 cut(s) 20, 151, 160, 619
SchI GAGTC 1 cut(s) 1018
ScrFI CCNGG 2 cut(s) 279, 722
SduI GDGCHC 4 cut(s) 39, 329, 661, 703
SfaNI GCATC 1 cut(s) 817
Sfr274I CTCGAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 20, 151
SlaI CTCGAG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 741, 789
SmoI CTYRAG 2 cut(s) 741, 789
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 8 cut(s) 125, 144, 452, 506, 511, 582, 614, 753
SsiI CCGC 4 cut(s) 136, 338, 732, 903
SspMI CTAG 2 cut(s) 366, 437
StyD4I CCNGG 2 cut(s) 277, 720
TaaI ACNGT 2 cut(s) 235, 821
TaqI TCGA 9 cut(s) 81, 142, 230, 284, 315, 323, 578, 742, 825
TasI AATT 8 cut(s) 125, 144, 452, 506, 511, 582, 614, 753
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 7 cut(s) 274, 350, 559, 601, 763, 892, 919
Tru1I TTAA 3 cut(s) 504, 510, 978
Tru9I TTAA 3 cut(s) 504, 510, 978
TscAI CASTG 1 cut(s) 826
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 1008
VpaK11BI GGWCC 2 cut(s) 20, 151
XapI RAATTY 2 cut(s) 144, 506
XhoI CTCGAG 1 cut(s) 741
XspI CTAG 2 cut(s) 366, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.