Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012583

Physical Location & Seq

Genomic Coordinates Reverse (-)

646823 .. 648140

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1011900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATCTCCGAATTGGAGACTCCGCTTCCAATTCCACTCGAGCTCATCTGGGGATGCAAGGGAAAGAGATCTGTACTCGCCCTGAAGAACGACGGATGCGCTTCCACTCTGCGTCGTCTGATTGGACCTGATTTTTTTTGTTCACTGCAACTCTGGGCTTCTCTGGCTCGCTGGCCTTCGGCGGCCAAGGCTCCGCCGCCGCCCCCCGTCCCTAATGCAGTCAAGAAGGAAACTTCCAGCCCTGATACGCCGCTGTGCTTCGAGCCCAGTGAATCTGACGAGAAGCAGCCTGACGACTTGAGTAGTAAACTCTTTAGTCAAAAAAGGAAGAGAGAGGACTGGATTACTATTGTGGACGAATTGACTTCGAAGGAAAAATGGCGATATCAAGAGCTTGAGGACGTGAAGCGTCTATTTGAGAAGATGAATGGTCTTAATTTGGAGTTTAAATCAAGGAAAGAGGAGGAACAGGATCCCCATGTGGATACGGATCCAAGTTCGAAACCAGCCGCGCAATTAAGCCAACCGACCCAACTCACATTTGTAACTTCGACTTACGTAACTTCGGCTCCTCCGGCCCCAAGACAAGAGCCTTACCAACATCCTCATCAGGTGCAAATGCCAATGCAAATTCATCCTCCTGGTGTGATTCTTTATCAACGTCAACTGCAGCAGCTGATCATGGATCAGACGGCTAAGACTCAAAGAAGAGAGATCAATGCGGGCCCACACGGCGGTCACATTAACCTTTGTTTTAGGGATGCAAACGTGTTGAACTCCTCGCAGCCGTTTGATCTTAGCTTGGTTAACAAAAATATGATTAGAAAAAGGGCAGCCGAGGCAAGGCAGAAGAGACTCGAAATCTGCAGGGTCAAGAAACCTCGCTTCCACTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

34.19

Weight (kDa)

9.16

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38410
malus_domestica	MD08G1012900.v1.1 MD15G1011900.v1.1
prunus_persica	Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1
pyrus_communis	pycom08g01100 pycom15g01050
rosa_chinensis	RchiOBHm_Chr6g0302891
rosa_laevigata	RLG00000011126
rosa_multiflora	Rmu_ssc0000460.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165180
rosa_rugosa	Rorug06G0317900
rosa_samantha	Rh6AG431500 Rh6BG471100 Rh6CG443900 Rh6DG430700
rosa_wichuraiana	Rw6G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	512
AciI	CCGC	9 cut(s)	23, 182, 194, 197, 200, 251, 510, 722, 735
AclWI	GGATC	5 cut(s)	467, 480, 485, 498, 693
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	734, 843
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	1 cut(s)	775
AjiI	CACGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	4 cut(s)	43, 394, 676, 801
AluI	AGCT	4 cut(s)	43, 394, 676, 801
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	11, 847
AlwI	GGATC	5 cut(s)	467, 480, 485, 498, 693
AlwNI	CAGNNNCTG	1 cut(s)	676
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	173, 183, 576, 724
ApaI	GGGCCC	1 cut(s)	728
ApeKI	GCWGC	5 cut(s)	286, 670, 673, 784, 833
ApoI	RAATTY	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	101, 514
AspS9I	GGNCC	4 cut(s)	125, 577, 724, 725
AsuII	TTCGAA	2 cut(s)	368, 500
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	728
BamHI	GGATCC	2 cut(s)	472, 490
BanII	GRGCYC	3 cut(s)	45, 267, 728
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	5 cut(s)	298, 682, 685, 796, 845
BceAI	ACGGC	3 cut(s)	708, 748, 772
BciT130I	CCWGG	1 cut(s)	642
BciVI	GTATCC	1 cut(s)	478
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	11, 847
BfmI	CTRYAG	2 cut(s)	668, 865
BfuI	GTATCC	1 cut(s)	478
BglI	GCCNNNNNGGC	1 cut(s)	732
BglII	AGATCT	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	4 cut(s)	125, 577, 724, 725
BmiI	GGNNCC	6 cut(s)	192, 474, 492, 570, 579, 726
BmrFI	CCNGG	1 cut(s)	642
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	3 cut(s)	44, 86, 751
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	877
Bpu14I	TTCGAA	2 cut(s)	368, 500
BpuEI	CTTGAG	2 cut(s)	319, 416
BsaAI	YACGTR	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	186, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	734, 843
Bse1I	ACTGG	2 cut(s)	267, 344
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	186, 837
BseGI	GGATG	5 cut(s)	59, 101, 601, 634, 766
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	2 cut(s)	734, 843
BseNI	ACTGG	2 cut(s)	267, 344
BseRI	GAGGAG	3 cut(s)	476, 561, 769
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	5 cut(s)	298, 682, 685, 796, 845
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	4 cut(s)	175, 185, 578, 726
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	734, 843
BsmAI	GTCTC	2 cut(s)	11, 847
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	4 cut(s)	175, 185, 578, 726
BsoBI	CYCGRG	1 cut(s)	38
Bsp119I	TTCGAA	2 cut(s)	368, 500
Bsp120I	GGGCCC	1 cut(s)	724
Bsp1286I	GDGCHC	3 cut(s)	45, 267, 728
Bsp143I	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
BspACI	CCGC	9 cut(s)	23, 182, 194, 197, 200, 251, 510, 722, 735
BspANI	GGCC	4 cut(s)	175, 185, 578, 726
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	6 cut(s)	192, 474, 492, 570, 579, 726
BspMAI	CTGCAG	2 cut(s)	672, 869
BspPI	GGATC	5 cut(s)	467, 480, 485, 498, 693
BspT104I	TTCGAA	2 cut(s)	368, 500
BsrI	ACTGG	2 cut(s)	267, 344
BssECI	CCNNGG	2 cut(s)	186, 837
BssMI	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	642
Bst6I	CTCTTC	3 cut(s)	323, 703, 845
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	2 cut(s)	368, 500
BstC8I	GCNNGC	3 cut(s)	169, 173, 724
BstDEI	CTNAG	2 cut(s)	696, 797
BstF5I	GGATG	5 cut(s)	59, 101, 601, 634, 766
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	101, 514
BstKTI	GATC	8 cut(s)	6, 71, 475, 493, 681, 688, 717, 796
BstMAI	GTCTC	2 cut(s)	11, 847
BstMBI	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 188, 575, 732, 839
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	2 cut(s)	668, 865
BstSLI	GKGCMC	1 cut(s)	728
BstSNI	TACGTA	1 cut(s)	559
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	5 cut(s)	298, 682, 685, 796, 845
BstX2I	RGATCY	3 cut(s)	68, 472, 490
BstYI	RGATCY	3 cut(s)	68, 472, 490
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	4 cut(s)	175, 185, 578, 726
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	5 cut(s)	59, 101, 601, 634, 766
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 274
Cac8I	GCNNGC	3 cut(s)	169, 173, 724
CaiI	CAGNNNCTG	1 cut(s)	676
CfoI	GCGC	2 cut(s)	101, 514
Cfr13I	GGNCC	4 cut(s)	125, 577, 724, 725
CseI	GACGC	2 cut(s)	101, 398
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	479, 682
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	696, 797
DpnI	GATC	8 cut(s)	5, 70, 474, 492, 680, 687, 716, 795
DpnII	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
DraI	TTTAAA	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	323, 703, 845
EarI	CTCTTC	3 cut(s)	323, 703, 845
EciI	GGCGGA	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	3 cut(s)	45, 267, 728
Eco32I	GATATC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	3 cut(s)	45, 267, 728
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	482, 685
FaiI	YATR	3 cut(s)	480, 683, 818
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	478, 681
FauI	CCCGC	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	678
FokI	GGATG	5 cut(s)	66, 108, 588, 621, 773
FriOI	GRGCYC	3 cut(s)	45, 267, 728
GlaI	GCGC	2 cut(s)	100, 513
GsuI	CTGGAG	1 cut(s)	877
HaeIII	GGCC	4 cut(s)	175, 185, 578, 726
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	2 cut(s)	101, 398
HhaI	GCGC	2 cut(s)	101, 514
Hin1II	CATG	2 cut(s)	482, 685
Hin6I	GCGC	2 cut(s)	99, 512
HinP1I	GCGC	2 cut(s)	99, 512
HincII	GTYRAC	2 cut(s)	665, 808
HindII	GTYRAC	2 cut(s)	665, 808
HinfI	GANTC	5 cut(s)	19, 272, 649, 700, 855
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	1 cut(s)	575
Hpy166II	GTNNAC	5 cut(s)	143, 308, 355, 665, 808
Hpy188I	TCNGA	4 cut(s)	10, 120, 277, 690
Hpy188III	TCNNGA	4 cut(s)	223, 389, 874, 894
Hpy8I	GTNNAC	5 cut(s)	143, 308, 355, 665, 808
Hpy99I	CGWCG	2 cut(s)	95, 117
HpyAV	CCTTC	3 cut(s)	186, 220, 364
HpyCH4IV	ACGT	4 cut(s)	402, 558, 661, 768
HpyCH4V	TGCA	8 cut(s)	57, 148, 218, 616, 628, 670, 764, 867
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 188, 575, 732, 839
HpyF3I	CTNAG	2 cut(s)	696, 797
HpySE526I	ACGT	4 cut(s)	402, 558, 661, 768
Hsp92II	CATG	2 cut(s)	482, 685
HspAI	GCGC	2 cut(s)	99, 512
Ksp22I	TGATCA	1 cut(s)	678
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
LmnI	GCTCC	2 cut(s)	196, 574
Lsp1109I	GCAGC	5 cut(s)	298, 682, 685, 796, 845
LweI	GCATC	3 cut(s)	44, 86, 751
MaeII	ACGT	4 cut(s)	402, 558, 661, 768
MaeIII	GTNAC	3 cut(s)	544, 559, 737
MalI	GATC	8 cut(s)	5, 70, 474, 492, 680, 687, 716, 795
MboI	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
MboII	GAAGA	5 cut(s)	97, 340, 433, 720, 862
MflI	RGATCY	3 cut(s)	68, 472, 490
MhlI	GDGCHC	3 cut(s)	45, 267, 728
MluCI	AATT	6 cut(s)	11, 30, 359, 436, 515, 630
MlyI	GAGTC	3 cut(s)	13, 694, 849
MseI	TTAA	5 cut(s)	435, 447, 518, 744, 807
MspA1I	CMGCKG	2 cut(s)	253, 676
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	5 cut(s)	164, 188, 575, 732, 839
NdeII	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
NlaIII	CATG	2 cut(s)	482, 685
NlaIV	GGNNCC	6 cut(s)	192, 474, 492, 570, 579, 726
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	737
NspV	TTCGAA	2 cut(s)	368, 500
PaeR7I	CTCGAG	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	272, 649
PleI	GAGTC	3 cut(s)	13, 694, 849
PpsI	GAGTC	3 cut(s)	13, 694, 849
Ppu21I	YACGTR	1 cut(s)	559
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	6 cut(s)	192, 474, 492, 570, 579, 726
PspOMI	GGGCCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	125, 577, 724, 725
PspXI	VCTCGAGB	1 cut(s)	38
PstI	CTGCAG	2 cut(s)	672, 869
PstNI	CAGNNNCTG	1 cut(s)	676
PsuI	RGATCY	3 cut(s)	68, 472, 490
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	5 cut(s)	435, 447, 518, 744, 807
Sau3AI	GATC	8 cut(s)	3, 68, 472, 490, 678, 685, 714, 793
Sau96I	GGNCC	4 cut(s)	125, 577, 724, 725
SchI	GAGTC	3 cut(s)	13, 694, 849
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	3 cut(s)	45, 267, 728
SfaNI	GCATC	3 cut(s)	44, 86, 751
SfcI	CTRYAG	2 cut(s)	668, 865
Sfr274I	CTCGAG	1 cut(s)	38
SfuI	TTCGAA	2 cut(s)	368, 500
SinI	GGWCC	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	3 cut(s)	38, 298, 395
SmoI	CTYRAG	3 cut(s)	38, 298, 395
SnaBI	TACGTA	1 cut(s)	559
Sse9I	AATT	6 cut(s)	11, 30, 359, 436, 515, 630
SsiI	CCGC	9 cut(s)	23, 182, 194, 197, 200, 251, 510, 722, 735
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	4 cut(s)	405, 561, 664, 771
TaqI	TCGA	6 cut(s)	39, 261, 368, 500, 551, 858
TasI	AATT	6 cut(s)	11, 30, 359, 436, 515, 630
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	5 cut(s)	185, 199, 202, 253, 512
TfiI	GAWTC	2 cut(s)	272, 649
Tru1I	TTAA	5 cut(s)	435, 447, 518, 744, 807
Tru9I	TTAA	5 cut(s)	435, 447, 518, 744, 807
TscAI	CASTG	2 cut(s)	150, 274
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	5 cut(s)	286, 670, 673, 784, 833
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	2 cut(s)	440, 623
TspGWI	ACGGA	2 cut(s)	108, 503
TspRI	CASTG	2 cut(s)	150, 274
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.