Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000460.1

Orthogroup ID

OG0012583

Physical Location & Seq

Genomic Coordinates Forward (+)

67156 .. 70186

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000460.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggaagcagagcagcaaggaccaacaacaatggagcccatcctcggctactacacctcgtacttctcacctcgggagttcgaaatcgccgaaatcatggtcggacttcctgacatcatctccgaattagacgaccgccctcgaattcgggtcccgtggggccacaagaagaagagatctgcgctggctgtacaagaccaaagagttcggaacaacaagtcgtcgtcgtcgtcgactgtggttcggcttcggttgctgtcgtcctcgtcttccccgagtcctgggtcgaaagttccggccactaatgttgtcaaggtcgagaggtcgagccccaacacgccgctgtcgtttgaatccgatgagaagcctagtcagttgagaagtaaagtggtggtcggaaagaggaaaagagaggaatggctggaggtgataaatggactagtgaagcgcaaagaattgctacataaagagatacagaatgtgaaggattataaggaaaagctgattaaatttaatgtggtattgcagtcgaggaagcaagagctgaaaatgcaaagattgattcagaaagaacctcgatcgaaaattgaggaacaaaagctgaatcttgatatgcaattgggccaacccacgcccatacaaacatccatagtcatttgtgcccctactattgttggacaagagcgttatcatcaactaagtgctcctcatcagtatcaaaccctggatcacaccgctcaaactcgtggcgcagtaattattgagaatcatgggtatctatcatctactactcaagtggcctcaacctctttgccatctaacagtgtcaatgctactggattgagattggtaagctgcaataacaatggaggcttaattcctgatcacggcttttcttcttttcctaaccagaatcaggggacacatgtggctgatctccaggcattgaacaatgcagtgtacatgaaaatggtgtcggcagggcaaccgagtgatgggttcttgttcaaaatcctccaaacaaatagcacaggagggcgaggatgtgatatatcactattgagtgtcacttgctccaaaccctcgattgacgatctgctcgcaggaatcgaattaggtctacatgattcatgtccatccccatcaccaatgacgcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

42.75

Weight (kDa)

9.23

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38410
malus_domestica	MD08G1012900.v1.1 MD15G1011900.v1.1
prunus_persica	Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1
pyrus_communis	pycom08g01100 pycom15g01050
rosa_chinensis	RchiOBHm_Chr6g0302891
rosa_laevigata	RLG00000011126
rosa_multiflora	Rmu_ssc0000460.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165180
rosa_rugosa	Rorug06G0317900
rosa_samantha	Rh6AG431500 Rh6BG471100 Rh6CG443900 Rh6DG430700
rosa_wichuraiana	Rw6G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccBSI	CCGCTC	1 cut(s)	737
AccI	GTMKAC	2 cut(s)	233, 1120
AccII	CGCG	1 cut(s)	1156
AciI	CCGC	4 cut(s)	136, 341, 735, 1156
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	144, 509
AfaI	GTAC	3 cut(s)	62, 192, 962
AfiI	CCNNNNNNNGG	5 cut(s)	44, 281, 887, 916, 995
AflIII	ACRYGT	1 cut(s)	925
AgsI	TTSAA	3 cut(s)	353, 949, 1009
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	280, 723, 939
AluBI	AGCT	4 cut(s)	502, 544, 601, 855
AluI	AGCT	4 cut(s)	502, 544, 601, 855
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	735
Ama87I	CYCGRG	2 cut(s)	72, 274
AoxI	GGCC	4 cut(s)	160, 297, 622, 798
ApeKI	GCWGC	2 cut(s)	13, 855
ApoI	RAATTY	2 cut(s)	144, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspLEI	GCGC	3 cut(s)	184, 450, 752
AspS9I	GGNCC	4 cut(s)	20, 151, 160, 622
AsuHPI	GGTGA	3 cut(s)	60, 439, 1137
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	2 cut(s)	72, 274
AvaII	GGWCC	2 cut(s)	20, 151
BaeGI	GKGCMC	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	39, 332
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	25, 842
BccI	CCATC	5 cut(s)	47, 823, 989, 1144, 1150
BceAI	ACGGC	1 cut(s)	904
BciT130I	CCWGG	3 cut(s)	282, 725, 941
BclI	TGATCA	1 cut(s)	883
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	2 cut(s)	369, 440
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	3 cut(s)	14, 341, 856
BlsI	GCNGC	3 cut(s)	15, 342, 857
Bme1390I	CCNGG	3 cut(s)	282, 725, 941
Bme18I	GGWCC	2 cut(s)	20, 151
BmeT110I	CYCGRG	2 cut(s)	72, 274
BmgT120I	GGNCC	4 cut(s)	20, 151, 160, 622
BmiI	GGNNCC	4 cut(s)	36, 152, 153, 161
BmrFI	CCNGG	3 cut(s)	282, 725, 941
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	2 cut(s)	443, 923
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	777
BsaJI	CCNNGG	5 cut(s)	43, 71, 155, 281, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 281, 887, 916, 995
Bse1I	ACTGG	1 cut(s)	841
BseBI	CCWGG	3 cut(s)	282, 725, 941
BseDI	CCNNGG	5 cut(s)	43, 71, 155, 281, 723
BseGI	GGATG	4 cut(s)	39, 644, 1049, 1136
BseLI	CCNNNNNNNGG	5 cut(s)	44, 281, 887, 916, 995
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	2 cut(s)	25, 842
Bsh1236I	CGCG	1 cut(s)	1156
Bsh1285I	CGRYCG	2 cut(s)	136, 581
BshFI	GGCC	4 cut(s)	162, 299, 624, 800
BsiEI	CGRYCG	2 cut(s)	136, 581
BsiHKAI	GWGCWC	1 cut(s)	706
BsiHKCI	CYCGRG	2 cut(s)	72, 274
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	137, 934
BslI	CCNNNNNNNGG	5 cut(s)	44, 281, 887, 916, 995
BsmFI	GGGAC	2 cut(s)	137, 934
BsnI	GGCC	4 cut(s)	162, 299, 624, 800
BsoBI	CYCGRG	2 cut(s)	72, 274
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	4 cut(s)	39, 332, 664, 706
Bsp1407I	TGTACA	2 cut(s)	190, 960
Bsp143I	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
BspACI	CCGC	4 cut(s)	136, 341, 735, 1156
BspANI	GGCC	4 cut(s)	162, 299, 624, 800
BspFNI	CGCG	1 cut(s)	1156
BspLI	GGNNCC	4 cut(s)	36, 152, 153, 161
BspPI	GGATC	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	737
BsrGI	TGTACA	2 cut(s)	190, 960
BsrI	ACTGG	1 cut(s)	841
BssECI	CCNNGG	5 cut(s)	43, 71, 155, 281, 723
BssMI	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
BssSI	CACGAG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	3 cut(s)	282, 725, 941
Bst4CI	ACNGT	2 cut(s)	238, 824
Bst6I	CTCTTC	1 cut(s)	167
BstAUI	TGTACA	2 cut(s)	190, 960
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	186, 1101
BstDEI	CTNAG	1 cut(s)	698
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	4 cut(s)	39, 644, 1049, 1136
BstFNI	CGCG	1 cut(s)	1156
BstHHI	GCGC	3 cut(s)	184, 450, 752
BstKTI	GATC	6 cut(s)	179, 581, 730, 886, 937, 1096
BstMBI	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
BstMCI	CGRYCG	2 cut(s)	136, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 550
BstNI	CCWGG	3 cut(s)	282, 725, 941
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	3 cut(s)	280, 723, 939
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	1 cut(s)	1156
BstV1I	GCAGC	2 cut(s)	25, 842
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	162, 299, 624, 800
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	39, 644, 1049, 1136
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	2 cut(s)	829, 963
Cac8I	GCNNGC	2 cut(s)	186, 1101
CfoI	GCGC	3 cut(s)	184, 450, 752
Cfr13I	GGNCC	4 cut(s)	20, 151, 160, 622
Csp6I	GTAC	3 cut(s)	61, 191, 961
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	6 cut(s)	97, 770, 926, 964, 1124, 1131
CviQI	GTAC	3 cut(s)	61, 191, 961
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	6 cut(s)	178, 580, 729, 885, 936, 1095
DpnII	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	39, 332
Eco47I	GGWCC	2 cut(s)	20, 151
Eco88I	CYCGRG	2 cut(s)	72, 274
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	280, 723, 939
EcoT38I	GRGCYC	2 cut(s)	39, 332
FaeI	CATG	6 cut(s)	100, 773, 929, 967, 1127, 1134
FaqI	GGGAC	2 cut(s)	137, 934
FatI	CATG	6 cut(s)	96, 769, 925, 963, 1123, 1130
FbaI	TGATCA	1 cut(s)	883
FblI	GTMKAC	2 cut(s)	233, 1120
Fnu4HI	GCNGC	3 cut(s)	14, 341, 856
FokI	GGATG	4 cut(s)	26, 631, 1056, 1123
FriOI	GRGCYC	2 cut(s)	39, 332
Fsp4HI	GCNGC	3 cut(s)	14, 341, 856
FspBI	CTAG	2 cut(s)	369, 440
GlaI	GCGC	3 cut(s)	183, 449, 751
GluI	GCNGC	3 cut(s)	14, 341, 856
GsuI	CTGGAG	2 cut(s)	443, 923
HaeIII	GGCC	4 cut(s)	162, 299, 624, 800
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	3 cut(s)	184, 450, 752
Hin1II	CATG	6 cut(s)	100, 773, 929, 967, 1127, 1134
Hin6I	GCGC	3 cut(s)	182, 448, 750
HinP1I	GCGC	3 cut(s)	182, 448, 750
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	8 cut(s)	277, 353, 562, 604, 766, 913, 1107, 1127
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	3 cut(s)	60, 439, 1137
Hpy166II	GTNNAC	3 cut(s)	234, 961, 1121
Hpy188I	TCNGA	6 cut(s)	104, 124, 210, 358, 398, 567
Hpy188III	TCNNGA	5 cut(s)	74, 110, 319, 608, 881
Hpy8I	GTNNAC	3 cut(s)	234, 961, 1121
Hpy99I	CGWCG	4 cut(s)	226, 229, 232, 235
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	2 cut(s)	238, 824
HpyCH4V	TGCA	5 cut(s)	526, 553, 616, 858, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 550
HpyF3I	CTNAG	1 cut(s)	698
Hsp92II	CATG	6 cut(s)	100, 773, 929, 967, 1127, 1134
HspAI	GCGC	3 cut(s)	182, 448, 750
KflI	GGGWCCC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
LmnI	GCTCC	3 cut(s)	34, 709, 1079
Lsp1109I	GCAGC	2 cut(s)	25, 842
MaeI	CTAG	2 cut(s)	369, 440
MaeIII	GTNAC	1 cut(s)	1066
MalI	GATC	6 cut(s)	178, 580, 729, 885, 936, 1095
MbiI	CCGCTC	1 cut(s)	737
MboI	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
MboII	GAAGA	4 cut(s)	181, 184, 261, 888
MfeI	CAATTG	1 cut(s)	617
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	4 cut(s)	39, 332, 664, 706
MluCI	AATT	9 cut(s)	125, 144, 455, 509, 585, 617, 756, 876, 1112
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	3 cut(s)	82, 376, 655
MseI	TTAA	3 cut(s)	507, 513, 875
MslI	CAYNNNNRTG	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	282, 725, 941
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	3 cut(s)	282, 725, 941
MvnI	CGCG	1 cut(s)	1156
MwoI	GCNNNNNNNGC	2 cut(s)	253, 550
NdeII	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
NlaIII	CATG	6 cut(s)	100, 773, 929, 967, 1127, 1134
NlaIV	GGNNCC	4 cut(s)	36, 152, 153, 161
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	6 cut(s)	87, 227, 230, 272, 344, 1107
PfeI	GAWTC	7 cut(s)	353, 562, 604, 766, 913, 1107, 1127
PkrI	GCNGC	3 cut(s)	15, 342, 857
Ple19I	CGATCG	1 cut(s)	581
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	151
PscI	ACATGT	1 cut(s)	925
PsiI	TTATAA	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	280, 723, 939
PspGI	CCWGG	3 cut(s)	280, 723, 939
PspN4I	GGNNCC	4 cut(s)	36, 152, 153, 161
PspPI	GGNCC	4 cut(s)	20, 151, 160, 622
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	62, 192, 962
RsaNI	GTAC	3 cut(s)	61, 191, 961
RseI	CAYNNNNRTG	1 cut(s)	968
SalI	GTCGAC	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	507, 513, 875
SatI	GCNGC	3 cut(s)	14, 341, 856
Sau3AI	GATC	6 cut(s)	176, 578, 727, 883, 934, 1093
Sau96I	GGNCC	4 cut(s)	20, 151, 160, 622
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	3 cut(s)	282, 725, 941
SduI	GDGCHC	4 cut(s)	39, 332, 664, 706
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	2 cut(s)	20, 151
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	9 cut(s)	125, 144, 455, 509, 585, 617, 756, 876, 1112
SsiI	CCGC	4 cut(s)	136, 341, 735, 1156
SspMI	CTAG	2 cut(s)	369, 440
StyD4I	CCNGG	3 cut(s)	280, 723, 939
TaaI	ACNGT	2 cut(s)	238, 824
TasI	AATT	9 cut(s)	125, 144, 455, 509, 585, 617, 756, 876, 1112
TatI	WGTACW	2 cut(s)	190, 960
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	7 cut(s)	353, 562, 604, 766, 913, 1107, 1127
Tru1I	TTAA	3 cut(s)	507, 513, 875
Tru9I	TTAA	3 cut(s)	507, 513, 875
TscAI	CASTG	2 cut(s)	829, 963
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	2 cut(s)	13, 855
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	2 cut(s)	980, 1119
TspRI	CASTG	2 cut(s)	829, 963
VpaK11BI	GGWCC	2 cut(s)	20, 151
XapI	RAATTY	2 cut(s)	144, 509
XceI	RCATGY	1 cut(s)	929
XmiI	GTMKAC	2 cut(s)	233, 1120
XspI	CTAG	2 cut(s)	369, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.