Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012583

Physical Location & Seq

Genomic Coordinates Reverse (-)

7015142 .. 7016648

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGCAGAGCAGCAAGGACCAACAACAATGGAGCCCATCCTCGGCTACTACACCTCGTACTTCTCACCTCGGGAGTTCGAAATCGCCGAAATCATGGTCGGACTTCCTGACATCATCTCCGAATTAGACGACCGCCCTCGAATTCGGGTCCCGTGGGGCCACAAGAAGAAGAGATCTGCGCTGGCTGTACAAGACCAAAGAGTTCGGAACAACAAGTCGTCGTTGTCGACTGTGGTTCGGCTTCGGTTGCTGTCGTCCTCGTCTTCCCCGAATCCTGGGTCGAAAGTTCCGGCCACTAATGTTGTCAAGGTCGAGAGGTCCAGCCCCAACACGCCGCTGTCGTTTGAATCCGATGAGAAGCCTAGTCAGTTGAGAAGTAAAGTGGTGGTCGGAAAGAGGAAAAGAGAGGAATGGCTGGAGGTGATAAATGGACTAGTGAAGCGCAAAGAATTGCTACATAAAGAGATACAGAATGTGAAGGATTATAAGGAAAAGCTGATTAAATTTAATGTAGTATTGCAGTCGAGGAAGCAAGAGCTGAAAATGCAAAGATTGATTCAGAAAGAACCTCAATCAAAAATTGAGGAACAAAAGCTGAACCTTGATATGAAATTGGGCCAACCCACGCCCGTACAAACATCCATAGTCATTTGTGCCCCTACTATTGTTGAACAAAAGCGTTATCATCAACTAAGTGCTCCTTATCAGTATCAAACCCTGGATCACACCGCTCAAACTCGAGGTGCAGTAATTATTGAGAATCATGGGTATCTATCATCTACTACTCAAGTGGCCTCAACCTCTTTGCCATCTAACAGTGTCAATGCTACTGGATTGAGATTGGTAAGCTGCAATAACAATGGAGGCTTAATTCCTGATCACGGCTTTTCTTCTTTTCCTAACCAGAATCGTGGCTCCGCCGTTGTTACCAAGAATCTCTATAAGGCTGTGTCTGCACAAAGAAGGCATGAGAGAATTCAGAAAAATAGGGTTAAAAGAACCTCTCTTTTAGGTCAAAGACAGAGTCGAGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

39.21

Weight (kDa)

10.02

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38410
malus_domestica	MD08G1012900.v1.1 MD15G1011900.v1.1
prunus_persica	Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1 Prupe.1G364900_v2.0.a1
pyrus_communis	pycom08g01100 pycom15g01050
rosa_chinensis	RchiOBHm_Chr6g0302891
rosa_laevigata	RLG00000011126
rosa_multiflora	Rmu_ssc0000460.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165180
rosa_rugosa	Rorug06G0317900
rosa_samantha	Rh6AG431500 Rh6BG471100 Rh6CG443900 Rh6DG430700
rosa_wichuraiana	Rw6G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccBSI	CCGCTC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	4 cut(s)	136, 338, 732, 921
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	144, 506, 978
AfaI	GTAC	3 cut(s)	62, 192, 636
AfiI	CCNNNNNNNGG	3 cut(s)	44, 278, 884
AgsI	TTSAA	2 cut(s)	350, 674
AhlI	ACTAGT	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	277, 720
AluBI	AGCT	4 cut(s)	499, 541, 598, 852
AluI	AGCT	4 cut(s)	499, 541, 598, 852
Alw21I	GWGCWC	1 cut(s)	703
AlwI	GGATC	1 cut(s)	732
Ama87I	CYCGRG	2 cut(s)	72, 741
AoxI	GGCC	4 cut(s)	160, 294, 619, 795
ApeKI	GCWGC	2 cut(s)	13, 852
ApoI	RAATTY	3 cut(s)	144, 506, 978
ArsI	GACNNNNNNTTYG	5 cut(s)	84, 116, 266, 298, 1012
AspLEI	GCGC	2 cut(s)	184, 447
AspS9I	GGNCC	5 cut(s)	20, 151, 160, 321, 619
AsuHPI	GGTGA	2 cut(s)	60, 436
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	2 cut(s)	72, 741
AvaII	GGWCC	3 cut(s)	20, 151, 321
BaeGI	GKGCMC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	2 cut(s)	25, 839
BccI	CCATC	2 cut(s)	47, 820
BceAI	ACGGC	2 cut(s)	901, 908
BciT130I	CCWGG	2 cut(s)	279, 722
BclI	TGATCA	1 cut(s)	880
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	2 cut(s)	366, 437
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	3 cut(s)	14, 338, 853
BlsI	GCNGC	3 cut(s)	15, 339, 854
Bme1390I	CCNGG	2 cut(s)	279, 722
Bme18I	GGWCC	3 cut(s)	20, 151, 321
BmeT110I	CYCGRG	2 cut(s)	72, 741
BmgT120I	GGNCC	5 cut(s)	20, 151, 160, 321, 619
BmiI	GGNNCC	5 cut(s)	36, 152, 153, 161, 919
BmrFI	CCNGG	2 cut(s)	279, 722
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	774
BsaJI	CCNNGG	5 cut(s)	43, 71, 155, 278, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 278, 884
Bse1I	ACTGG	1 cut(s)	838
BseBI	CCWGG	2 cut(s)	279, 722
BseDI	CCNNGG	5 cut(s)	43, 71, 155, 278, 720
BseGI	GGATG	2 cut(s)	39, 641
BseLI	CCNNNNNNNGG	3 cut(s)	44, 278, 884
BseNI	ACTGG	1 cut(s)	838
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	25, 839
BsgI	GTGCAG	2 cut(s)	768, 942
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	162, 296, 621, 797
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	2 cut(s)	72, 741
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	44, 278, 884
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	162, 296, 621, 797
BsoBI	CYCGRG	2 cut(s)	72, 741
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	39, 661, 703
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	176, 724, 880
BspACI	CCGC	4 cut(s)	136, 338, 732, 921
BspANI	GGCC	4 cut(s)	162, 296, 621, 797
BspLI	GGNNCC	5 cut(s)	36, 152, 153, 161, 919
BspPI	GGATC	1 cut(s)	732
BspT104I	TTCGAA	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	734
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	5 cut(s)	43, 71, 155, 278, 720
BssMI	GATC	3 cut(s)	176, 724, 880
Bst2UI	CCWGG	2 cut(s)	279, 722
Bst4CI	ACNGT	2 cut(s)	235, 821
Bst6I	CTCTTC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	695
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	39, 641
BstHHI	GCGC	2 cut(s)	184, 447
BstKTI	GATC	3 cut(s)	179, 727, 883
BstMBI	GATC	3 cut(s)	176, 724, 880
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 547, 956
BstNI	CCWGG	2 cut(s)	279, 722
BstSCI	CCNGG	2 cut(s)	277, 720
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	25, 839
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	176
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	162, 296, 621, 797
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	39, 641
BtsIMutI	CAGTG	1 cut(s)	826
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	184, 447
Cfr13I	GGNCC	5 cut(s)	20, 151, 160, 321, 619
Csp6I	GTAC	3 cut(s)	61, 191, 635
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	3 cut(s)	97, 767, 971
CviQI	GTAC	3 cut(s)	61, 191, 635
DdeI	CTNAG	1 cut(s)	695
DpnI	GATC	3 cut(s)	178, 726, 882
DpnII	GATC	3 cut(s)	176, 724, 880
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	910
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	3 cut(s)	20, 151, 321
Eco88I	CYCGRG	2 cut(s)	72, 741
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	2 cut(s)	144, 978
EcoRII	CCWGG	2 cut(s)	277, 720
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	3 cut(s)	100, 770, 974
FaiI	YATR	9 cut(s)	98, 462, 489, 611, 647, 768, 945, 972, 1039
FalI	AAGNNNNNCTT	2 cut(s)	688, 720
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	3 cut(s)	96, 766, 970
FbaI	TGATCA	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	14, 338, 853
FokI	GGATG	2 cut(s)	26, 628
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	14, 338, 853
FspBI	CTAG	2 cut(s)	366, 437
GlaI	GCGC	2 cut(s)	183, 446
GluI	GCNGC	3 cut(s)	14, 338, 853
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	4 cut(s)	162, 296, 621, 797
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	2 cut(s)	184, 447
Hin1II	CATG	3 cut(s)	100, 770, 974
Hin6I	GCGC	2 cut(s)	182, 445
HinP1I	GCGC	2 cut(s)	182, 445
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	7 cut(s)	274, 350, 559, 763, 910, 937, 1027
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	60, 436
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	7 cut(s)	104, 124, 210, 355, 395, 564, 984
Hpy188III	TCNNGA	5 cut(s)	74, 110, 316, 878, 1031
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	475, 960
HpyCH4III	ACNGT	2 cut(s)	235, 821
HpyCH4V	TGCA	5 cut(s)	523, 550, 749, 855, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 547, 956
HpyF3I	CTNAG	1 cut(s)	695
Hsp92II	CATG	3 cut(s)	100, 770, 974
HspAI	GCGC	2 cut(s)	182, 445
KflI	GGGWCCC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	176, 724, 880
LmnI	GCTCC	3 cut(s)	34, 706, 923
Lsp1109I	GCAGC	2 cut(s)	25, 839
MaeI	CTAG	2 cut(s)	366, 437
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	3 cut(s)	178, 726, 882
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	3 cut(s)	176, 724, 880
MboII	GAAGA	4 cut(s)	181, 184, 258, 885
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	3 cut(s)	39, 661, 703
MluCI	AATT	9 cut(s)	125, 144, 452, 506, 582, 614, 753, 873, 978
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	2 cut(s)	82, 373
MseI	TTAA	4 cut(s)	504, 510, 872, 996
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	279, 722
MvaI	CCWGG	2 cut(s)	279, 722
MwoI	GCNNNNNNNGC	3 cut(s)	250, 547, 956
NdeII	GATC	3 cut(s)	176, 724, 880
NlaIII	CATG	3 cut(s)	100, 770, 974
NlaIV	GGNNCC	5 cut(s)	36, 152, 153, 161, 919
NmeAIII	GCCGAG	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	4 cut(s)	87, 227, 269, 341
PfeI	GAWTC	6 cut(s)	274, 350, 559, 763, 910, 937
PflFI	GACNNNGTC	1 cut(s)	1026
PkrI	GCNGC	3 cut(s)	15, 339, 854
PleI	GAGTC	1 cut(s)	1035
PpsI	GAGTC	1 cut(s)	1035
PpuMI	RGGWCCY	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	277, 720
PspGI	CCWGG	2 cut(s)	277, 720
PspN4I	GGNNCC	5 cut(s)	36, 152, 153, 161, 919
PspPI	GGNCC	5 cut(s)	20, 151, 160, 321, 619
PspPPI	RGGWCCY	1 cut(s)	151
PspXI	VCTCGAGB	1 cut(s)	741
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	1026
RsaI	GTAC	3 cut(s)	62, 192, 636
RsaNI	GTAC	3 cut(s)	61, 191, 635
SalI	GTCGAC	1 cut(s)	229
SaqAI	TTAA	4 cut(s)	504, 510, 872, 996
SatI	GCNGC	3 cut(s)	14, 338, 853
Sau3AI	GATC	3 cut(s)	176, 724, 880
Sau96I	GGNCC	5 cut(s)	20, 151, 160, 321, 619
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	2 cut(s)	279, 722
SduI	GDGCHC	3 cut(s)	39, 661, 703
Sfr274I	CTCGAG	1 cut(s)	741
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	3 cut(s)	20, 151, 321
SlaI	CTCGAG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	741, 789
SmoI	CTYRAG	2 cut(s)	741, 789
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	9 cut(s)	125, 144, 452, 506, 582, 614, 753, 873, 978
SsiI	CCGC	4 cut(s)	136, 338, 732, 921
SspMI	CTAG	2 cut(s)	366, 437
StyD4I	CCNGG	2 cut(s)	277, 720
TaaI	ACNGT	2 cut(s)	235, 821
TaqI	TCGA	8 cut(s)	81, 142, 230, 284, 315, 527, 742, 1030
TasI	AATT	9 cut(s)	125, 144, 452, 506, 582, 614, 753, 873, 978
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	6 cut(s)	274, 350, 559, 763, 910, 937
Tru1I	TTAA	4 cut(s)	504, 510, 872, 996
Tru9I	TTAA	4 cut(s)	504, 510, 872, 996
TscAI	CASTG	1 cut(s)	826
TseI	GCWGC	2 cut(s)	13, 852
TspDTI	ATGAA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	826
Tth111I	GACNNNGTC	1 cut(s)	1026
VpaK11BI	GGWCC	3 cut(s)	20, 151, 321
XapI	RAATTY	3 cut(s)	144, 506, 978
XhoI	CTCGAG	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	2 cut(s)	366, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.