Rh6CG443900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012583
Physical Location & Seq
Forward (+)
62218193 .. 62220622
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG443900.1

Sequence Viewer

Length: 1065 bp
ATGGAAGCAGAGCAGCAAGGACCAACAACAATGGAGCCCATCCTCGGCTACTACACCTCGTACTTCTCACCCCGGGAGTTCGAAATCGCCGAAATCATGGTCGGACTTCCTGACATCATCTCCGAATTAGACGACCGCCCTCGAATTCGGGTCCCGTGGGGCCACAAGAAGAAGAGATCTGCGCTGGCTGTACAAGACCAAAGAGTTCGGAACAACAAGTCGTCGTCGTCGTCGACTGTGGTTCGGCTTCGGTTGCTGTCGTCCTCGTCTTCCCCGAGTCCTGGGTCGAAAGTTCCGGCCACTAATGTTGTCAAGGTCGAGAGGTCGAGCCCCAACACGCCGCTGTCGTTTGAATCCGATGAGAAGCCTAGTCAGTTGAGAAGTAAAGTGGTGGTCGGAAAGAGGAAAAGAGAGGAATGGCTGGAGGTGATAAATGGACTAGTGAAGCGCAAAGAATTGCTACATAAAGAGATACAGAATGTGAAGGATTATAAGGAAAAGCTGATTAAATTTAATGTGGTATTGCAATCGAGGAAGCAAGAGCTGAAAATGCAAAGATTGATTCAGAAAGAACCTCGATCAAAAATTGAGGAACAAAAGCTGAATCTTGATATGAAATTGGGCCAACCCACGCCCATACAAACATCCATAGTCATTTGTGCCCCTACTATTGTTGAACAAGAGCGTTATCATCAACTAAGTGCTCCTCATCACTATCAAACCCTGGATCACACCGCTCAAACTCGAGGCGCAGTAATTATTGAGAATCATGGGTATCTATCATCTACTACTCAAGTGGCCTCAACCTCTTTGCCATCTAACAGTGTCAATGCTACTGGATTGAGATTGGTAAGCTGCAATAACAATGGAGGCTTAATTCCTGATCACGGCTTTTCATCTTTTCCTAACCAGAATCGTGGCTCCGCCTTTGTTACCAAGAATCTCTATAGGGCTGTGTCTGCACAAAGAAGGCATGAGAGATATCAGAAAAATAGGGTTAAAAGAACCTCTCAGGTCAAAGACGGAGTCAAGAGTTATAGTGTTGCAAAGGATGATAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

40.05

Weight (kDa)

9.93

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AccBSI CCGCTC 1 cut(s) 737
AccI GTMKAC 1 cut(s) 233
AciI CCGC 4 cut(s) 136, 341, 735, 924
AclWI GGATC 1 cut(s) 735
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 2 cut(s) 144, 509
AfaI GTAC 2 cut(s) 62, 192
AfiI CCNNNNNNNGG 3 cut(s) 44, 281, 887
AgsI TTSAA 2 cut(s) 353, 677
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 2 cut(s) 280, 723
AluBI AGCT 4 cut(s) 502, 544, 601, 855
AluI AGCT 4 cut(s) 502, 544, 601, 855
Alw21I GWGCWC 1 cut(s) 706
AlwI GGATC 1 cut(s) 735
Ama87I CYCGRG 3 cut(s) 72, 274, 744
AoxI GGCC 4 cut(s) 160, 297, 622, 798
ApeKI GCWGC 2 cut(s) 13, 855
ApoI RAATTY 2 cut(s) 144, 509
ArsI GACNNNNNNTTYG 4 cut(s) 84, 116, 1011, 1043
AspLEI GCGC 3 cut(s) 184, 450, 752
AspS9I GGNCC 4 cut(s) 20, 151, 160, 622
AsuC2I CCSGG 2 cut(s) 73, 74
AsuHPI GGTGA 2 cut(s) 60, 439
AsuII TTCGAA 1 cut(s) 81
AvaI CYCGRG 3 cut(s) 72, 274, 744
AvaII GGWCC 2 cut(s) 20, 151
BaeGI GKGCMC 1 cut(s) 664
BanII GRGCYC 2 cut(s) 39, 332
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 2 cut(s) 25, 842
BccI CCATC 2 cut(s) 47, 823
BceAI ACGGC 1 cut(s) 904
BciT130I CCWGG 2 cut(s) 282, 725
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 2 cut(s) 73, 74
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 2 cut(s) 369, 440
BfmI CTRYAG 1 cut(s) 946
BglII AGATCT 1 cut(s) 176
BisI GCNGC 3 cut(s) 14, 341, 856
BlsI GCNGC 3 cut(s) 15, 342, 857
Bme1390I CCNGG 4 cut(s) 73, 74, 282, 725
Bme18I GGWCC 2 cut(s) 20, 151
BmeT110I CYCGRG 3 cut(s) 72, 274, 744
BmgT120I GGNCC 4 cut(s) 20, 151, 160, 622
BmiI GGNNCC 5 cut(s) 36, 152, 153, 161, 922
BmrFI CCNGG 4 cut(s) 73, 74, 282, 725
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 443
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 777
BpuMI CCSGG 2 cut(s) 73, 74
BsaJI CCNNGG 6 cut(s) 43, 71, 72, 155, 281, 723
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 281, 887
Bse1I ACTGG 1 cut(s) 841
BseBI CCWGG 2 cut(s) 282, 725
BseDI CCNNGG 6 cut(s) 43, 71, 72, 155, 281, 723
BseGI GGATG 3 cut(s) 39, 644, 1057
BseLI CCNNNNNNNGG 3 cut(s) 44, 281, 887
BseMII CTCAG 1 cut(s) 1025
BseNI ACTGG 1 cut(s) 841
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 2 cut(s) 25, 842
BsgI GTGCAG 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 162, 299, 624, 800
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 706
BsiHKCI CYCGRG 3 cut(s) 72, 274, 744
BsiSI CCGG 2 cut(s) 73, 296
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 44, 281, 887
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 4 cut(s) 162, 299, 624, 800
BsoBI CYCGRG 3 cut(s) 72, 274, 744
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 39, 332, 664, 706
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 4 cut(s) 176, 578, 727, 883
BspACI CCGC 4 cut(s) 136, 341, 735, 924
BspANI GGCC 4 cut(s) 162, 299, 624, 800
BspCNI CTCAG 1 cut(s) 1024
BspLI GGNNCC 5 cut(s) 36, 152, 153, 161, 922
BspPI GGATC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 841
BssECI CCNNGG 6 cut(s) 43, 71, 72, 155, 281, 723
BssMI GATC 4 cut(s) 176, 578, 727, 883
Bst2UI CCWGG 2 cut(s) 282, 725
Bst4CI ACNGT 2 cut(s) 238, 824
Bst6I CTCTTC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 698, 1011
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 39, 644, 1057
BstHHI GCGC 3 cut(s) 184, 450, 752
BstKTI GATC 4 cut(s) 179, 581, 730, 886
BstMBI GATC 4 cut(s) 176, 578, 727, 883
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 253, 550, 959
BstNI CCWGG 2 cut(s) 282, 725
BstSCI CCNGG 4 cut(s) 71, 72, 280, 723
BstSFI CTRYAG 1 cut(s) 946
BstSLI GKGCMC 1 cut(s) 664
BstV1I GCAGC 2 cut(s) 25, 842
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 917
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 4 cut(s) 162, 299, 624, 800
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 3 cut(s) 39, 644, 1057
BtsIMutI CAGTG 1 cut(s) 829
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 3 cut(s) 184, 450, 752
Cfr13I GGNCC 4 cut(s) 20, 151, 160, 622
Cfr9I CCCGGG 1 cut(s) 72
Csp6I GTAC 2 cut(s) 61, 191
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 3 cut(s) 97, 770, 974
CviQI GTAC 2 cut(s) 61, 191
DdeI CTNAG 2 cut(s) 698, 1011
DpnI GATC 4 cut(s) 178, 580, 729, 885
DpnII GATC 4 cut(s) 176, 578, 727, 883
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 913
Eco24I GRGCYC 2 cut(s) 39, 332
Eco32I GATATC 1 cut(s) 983
Eco47I GGWCC 2 cut(s) 20, 151
Eco88I CYCGRG 3 cut(s) 72, 274, 744
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 280, 723
EcoRV GATATC 1 cut(s) 983
EcoT38I GRGCYC 2 cut(s) 39, 332
FaeI CATG 3 cut(s) 100, 773, 977
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 96, 769, 973
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 3 cut(s) 14, 341, 856
FokI GGATG 2 cut(s) 26, 631
FriOI GRGCYC 2 cut(s) 39, 332
Fsp4HI GCNGC 3 cut(s) 14, 341, 856
FspBI CTAG 2 cut(s) 369, 440
GlaI GCGC 3 cut(s) 183, 449, 751
GluI GCNGC 3 cut(s) 14, 341, 856
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 4 cut(s) 162, 299, 624, 800
HapII CCGG 2 cut(s) 73, 296
HhaI GCGC 3 cut(s) 184, 450, 752
Hin1II CATG 3 cut(s) 100, 773, 977
Hin6I GCGC 3 cut(s) 182, 448, 750
HinP1I GCGC 3 cut(s) 182, 448, 750
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 8 cut(s) 277, 353, 562, 604, 766, 913, 940, 1026
HpaII CCGG 2 cut(s) 73, 296
HphI GGTGA 2 cut(s) 60, 439
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 7 cut(s) 104, 124, 210, 358, 398, 567, 987
Hpy188III TCNNGA 5 cut(s) 110, 319, 608, 881, 1030
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 4 cut(s) 226, 229, 232, 235
HpyAV CCTTC 2 cut(s) 478, 963
HpyCH4III ACNGT 2 cut(s) 238, 824
HpyCH4V TGCA 5 cut(s) 526, 553, 858, 962, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 550, 959
HpyF3I CTNAG 2 cut(s) 698, 1011
Hsp92II CATG 3 cut(s) 100, 773, 977
HspAI GCGC 3 cut(s) 182, 448, 750
KflI GGGWCCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 4 cut(s) 176, 578, 727, 883
LmnI GCTCC 3 cut(s) 34, 709, 926
Lsp1109I GCAGC 2 cut(s) 25, 842
MaeI CTAG 2 cut(s) 369, 440
MaeIII GTNAC 1 cut(s) 931
MalI GATC 4 cut(s) 178, 580, 729, 885
MbiI CCGCTC 1 cut(s) 737
MboI GATC 4 cut(s) 176, 578, 727, 883
MboII GAAGA 3 cut(s) 181, 184, 261
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 39, 332, 664, 706
MluCI AATT 8 cut(s) 125, 144, 455, 509, 585, 617, 756, 876
MlyI GAGTC 2 cut(s) 286, 1035
MmeI TCCRAC 2 cut(s) 82, 376
MseI TTAA 4 cut(s) 507, 513, 875, 999
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 2 cut(s) 73, 296
MspR9I CCNGG 4 cut(s) 73, 74, 282, 725
MvaI CCWGG 2 cut(s) 282, 725
MwoI GCNNNNNNNGC 3 cut(s) 253, 550, 959
NciI CCSGG 2 cut(s) 73, 74
NdeII GATC 4 cut(s) 176, 578, 727, 883
NlaIII CATG 3 cut(s) 100, 773, 977
NlaIV GGNNCC 5 cut(s) 36, 152, 153, 161, 922
NmeAIII GCCGAG 1 cut(s) 24
NspV TTCGAA 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 744
PcsI WCGNNNNNNNCGW 5 cut(s) 87, 227, 230, 272, 344
PfeI GAWTC 6 cut(s) 353, 562, 604, 766, 913, 940
PflFI GACNNNGTC 1 cut(s) 1025
PkrI GCNGC 3 cut(s) 15, 342, 857
PleI GAGTC 2 cut(s) 285, 1034
PpsI GAGTC 2 cut(s) 285, 1034
PpuMI RGGWCCY 1 cut(s) 151
PsiI TTATAA 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 280, 723
PspGI CCWGG 2 cut(s) 280, 723
PspN4I GGNNCC 5 cut(s) 36, 152, 153, 161, 922
PspPI GGNCC 4 cut(s) 20, 151, 160, 622
PspPPI RGGWCCY 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 744
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 1025
RsaI GTAC 2 cut(s) 62, 192
RsaNI GTAC 2 cut(s) 61, 191
SalI GTCGAC 1 cut(s) 232
SaqAI TTAA 4 cut(s) 507, 513, 875, 999
SatI GCNGC 3 cut(s) 14, 341, 856
Sau3AI GATC 4 cut(s) 176, 578, 727, 883
Sau96I GGNCC 4 cut(s) 20, 151, 160, 622
SchI GAGTC 2 cut(s) 286, 1035
ScrFI CCNGG 4 cut(s) 73, 74, 282, 725
SduI GDGCHC 4 cut(s) 39, 332, 664, 706
SfcI CTRYAG 1 cut(s) 946
Sfr274I CTCGAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 20, 151
SlaI CTCGAG 1 cut(s) 744
SmaI CCCGGG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 744, 792
SmoI CTYRAG 2 cut(s) 744, 792
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 8 cut(s) 125, 144, 455, 509, 585, 617, 756, 876
SsiI CCGC 4 cut(s) 136, 341, 735, 924
SspMI CTAG 2 cut(s) 369, 440
StyD4I CCNGG 4 cut(s) 71, 72, 280, 723
TaaI ACNGT 2 cut(s) 238, 824
TaqI TCGA 9 cut(s) 81, 142, 233, 287, 318, 326, 530, 577, 745
TasI AATT 8 cut(s) 125, 144, 455, 509, 585, 617, 756, 876
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 6 cut(s) 353, 562, 604, 766, 913, 940
Tru1I TTAA 4 cut(s) 507, 513, 875, 999
Tru9I TTAA 4 cut(s) 507, 513, 875, 999
TscAI CASTG 1 cut(s) 829
TseI GCWGC 2 cut(s) 13, 855
TspDTI ATGAA 2 cut(s) 629, 885
TspGWI ACGGA 1 cut(s) 1038
TspMI CCCGGG 1 cut(s) 72
TspRI CASTG 1 cut(s) 829
Tth111I GACNNNGTC 1 cut(s) 1025
VpaK11BI GGWCC 2 cut(s) 20, 151
XapI RAATTY 2 cut(s) 144, 509
XhoI CTCGAG 1 cut(s) 744
XmaI CCCGGG 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 2 cut(s) 369, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.