pycom08g01100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012583
Physical Location & Seq
Reverse (-)
856334 .. 857834
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01100.3

Sequence Viewer

Length: 1023 bp
ATGGAACAGAGGGAAACACTGACAATGGAACAGAGGCTTCTACTCTTCCCCTGTTTTCCGAACGCCAGCGACGCCGAGATAGAGGTGGCGAAAATCCTGATTAATCTTCCCCACATGATCTCCGAATTCGAAACTCCGCTTCCGATTCAGCTCGCGCTCGTCTGGGGATGCAAGAGAAAGAGATCTGTACTCGCTCTGAAGAACGACGGCGGCGCTTCCAGTCTGCGTCGTCTGATTCGACCTGATTTTTTGTCTTCACTTCCACTCTGGGCTTCTCTGACTCCTCTGGCTCCTGGGCCTTTGGCGGCCATGGCTCCGCCGCCTCCCCCCGTCCCTAATGCTGTCAAGGAGGAGACTTCCAGCCCCGATACGCCGCTGTGCTTCGAGCCCAGTGAATCTGATGAGAAGCAGCCTGACCACCTGAGAAGTAAACTCCTTGGTCAAAAAAGGAAAACAGAGGAATGGATTACAATTGTGGACGAATTGACTTCGAAGAAAAAATTGCGAAATCAAGAGCTTGTGAATGTGAAGCGTTTCTTTGAGAAGATGGATGGTCTTAATTTGGAGTTGAAAGCAAGGAAAGAGGAGGAAGAGGAGCCACGTTTGGATTCCGATATAAGCCCGGAACCAACCGAGCAATTAAGCCAACCGACCCAACTCAAGTCTGTGACTCCGCCTCAACCGGCCCCAAATCAAGACCCTTACCAACATCCTGAGCAAGTGAAAATGCCAATGCCAATGCAAATGCAAATTCCTCCTCCTCCTAGTGTGATTTTTTATCAACATCAACTGCAGCAGCTGATCATGGATCAAACGGCTAAAAATCAAAGAAGAGAGATCAACGTGGGCCCGCGAGGCGGTAACTTTAACCTCTGTTTTAAGGATTCTATCGTGTTGAACTCCTCCCAGCCCTTTGATCTTGGCTTGGTTAACAAGGATGTGATTAGGAAAAGGGCAGCTGAGGCAAGGCAGAAGAGGCTCGAAATCTGCAGGGTCAAGAAACCTCGCTTCCACTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.76

Weight (kDa)

8.71

Isoelectric Point (pI)

65.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 155, 853
AciI CCGC 9 cut(s) 137, 210, 305, 317, 320, 374, 674, 851, 858
AclWI GGATC 1 cut(s) 816
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 125, 750
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 857
AgsI TTSAA 2 cut(s) 571, 898
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 151, 517, 799, 959
AluI AGCT 4 cut(s) 151, 517, 799, 959
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 816
AlwNI CAGNNNCTG 1 cut(s) 799
AoxI GGCC 4 cut(s) 296, 306, 684, 847
ApaI GGGCCC 1 cut(s) 851
ApeKI GCWGC 4 cut(s) 409, 793, 796, 956
ApoI RAATTY 2 cut(s) 125, 750
AseI ATTAAT 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 157, 215
AspS9I GGNCC 4 cut(s) 296, 685, 847, 848
AsuC2I CCSGG 1 cut(s) 623
AsuII TTCGAA 2 cut(s) 129, 491
BaeGI GKGCMC 1 cut(s) 851
BanII GRGCYC 2 cut(s) 390, 851
BbsI GAAGAC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 960
BbvI GCAGC 4 cut(s) 421, 805, 808, 968
BccI CCATC 2 cut(s) 541, 545
BceAI ACGGC 2 cut(s) 223, 831
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 801
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 2 cut(s) 791, 988
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 855
BglII AGATCT 1 cut(s) 182
BisI GCNGC 8 cut(s) 211, 306, 320, 374, 410, 794, 797, 957
BlsI GCNGC 8 cut(s) 212, 307, 321, 375, 411, 795, 798, 958
Bme1390I CCNGG 2 cut(s) 294, 623
BmgT120I GGNCC 4 cut(s) 296, 685, 847, 848
BmiI GGNNCC 6 cut(s) 291, 315, 597, 627, 687, 849
BmrFI CCNGG 2 cut(s) 294, 623
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 1000
Bpu10I CCTNAGC 2 cut(s) 714, 960
Bpu14I TTCGAA 2 cut(s) 129, 491
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 293, 309, 436
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 857
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 2 cut(s) 219, 390
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 293, 309, 436
BseGI GGATG 4 cut(s) 173, 556, 709, 943
BseLI CCNNNNNNNGG 1 cut(s) 857
BseMII CTCAG 3 cut(s) 413, 705, 951
BseNI ACTGG 2 cut(s) 219, 390
BseRI GAGGAG 7 cut(s) 273, 365, 599, 608, 747, 750, 892
BseSI GKGCMC 1 cut(s) 851
BseXI GCAGC 4 cut(s) 421, 805, 808, 968
BseYI CCCAGC 1 cut(s) 906
Bsh1236I CGCG 2 cut(s) 155, 853
BshFI GGCC 4 cut(s) 298, 308, 686, 849
BsiSI CCGG 2 cut(s) 623, 683
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 857
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 4 cut(s) 298, 308, 686, 849
Bsp119I TTCGAA 2 cut(s) 129, 491
Bsp120I GGGCCC 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 390, 851
Bsp143I GATC 6 cut(s) 117, 182, 801, 808, 837, 916
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 9 cut(s) 137, 210, 305, 317, 320, 374, 674, 851, 858
BspANI GGCC 4 cut(s) 298, 308, 686, 849
BspCNI CTCAG 3 cut(s) 414, 706, 952
BspFNI CGCG 2 cut(s) 155, 853
BspLI GGNNCC 6 cut(s) 291, 315, 597, 627, 687, 849
BspMAI CTGCAG 2 cut(s) 795, 992
BspPI GGATC 1 cut(s) 816
BspT104I TTCGAA 2 cut(s) 129, 491
BsrFI RCCGGY 1 cut(s) 682
BsrI ACTGG 2 cut(s) 219, 390
BssAI RCCGGY 1 cut(s) 682
BssECI CCNNGG 3 cut(s) 293, 309, 436
BssMI GATC 6 cut(s) 117, 182, 801, 808, 837, 916
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 309, 436
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 4 cut(s) 50, 585, 826, 968
BstACI GRCGYC 1 cut(s) 72
BstBI TTCGAA 2 cut(s) 129, 491
BstC8I GCNNGC 3 cut(s) 67, 153, 851
BstDEI CTNAG 3 cut(s) 422, 714, 960
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 173, 556, 709, 943
BstFNI CGCG 2 cut(s) 155, 853
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 157, 215
BstKTI GATC 6 cut(s) 120, 185, 804, 811, 840, 919
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 6 cut(s) 117, 182, 801, 808, 837, 916
BstMWI GCNNNNNNNGC 5 cut(s) 71, 311, 855, 962, 976
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 292, 621
BstSFI CTRYAG 2 cut(s) 791, 988
BstSLI GKGCMC 1 cut(s) 851
BstUI CGCG 2 cut(s) 155, 853
BstV1I GCAGC 4 cut(s) 421, 805, 808, 968
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 4 cut(s) 298, 308, 686, 849
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 173, 556, 709, 943
BtsIMutI CAGTG 2 cut(s) 17, 397
Cac8I GCNNGC 3 cut(s) 67, 153, 851
CaiI CAGNNNCTG 1 cut(s) 799
CfoI GCGC 2 cut(s) 157, 215
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 4 cut(s) 296, 685, 847, 848
CseI GACGC 2 cut(s) 80, 215
Csp6I GTAC 1 cut(s) 188
CviAII CATG 3 cut(s) 115, 310, 805
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 422, 714, 960
DpnI GATC 6 cut(s) 119, 184, 803, 810, 839, 918
DpnII GATC 6 cut(s) 117, 182, 801, 808, 837, 916
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 4 cut(s) 50, 585, 826, 968
EarI CTCTTC 4 cut(s) 50, 585, 826, 968
EciI GGCGGA 2 cut(s) 306, 663
Eco130I CCWWGG 2 cut(s) 309, 436
Eco24I GRGCYC 2 cut(s) 390, 851
Eco57I CTGAAG 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 309, 436
EcoT38I GRGCYC 2 cut(s) 390, 851
ErhI CCWWGG 2 cut(s) 309, 436
FaeI CATG 3 cut(s) 118, 313, 808
FaiI YATR 4 cut(s) 116, 311, 617, 806
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 114, 309, 804
FauI CCCGC 1 cut(s) 858
FbaI TGATCA 1 cut(s) 801
Fnu4HI GCNGC 8 cut(s) 211, 306, 320, 374, 410, 794, 797, 957
FokI GGATG 4 cut(s) 180, 563, 696, 950
FriOI GRGCYC 2 cut(s) 390, 851
Fsp4HI GCNGC 8 cut(s) 211, 306, 320, 374, 410, 794, 797, 957
FspBI CTAG 1 cut(s) 765
GlaI GCGC 2 cut(s) 156, 214
GluI GCNGC 8 cut(s) 211, 306, 320, 374, 410, 794, 797, 957
GsaI CCCAGC 1 cut(s) 910
GsuI CTGGAG 1 cut(s) 1000
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 4 cut(s) 298, 308, 686, 849
HapII CCGG 2 cut(s) 623, 683
HgaI GACGC 2 cut(s) 80, 215
HhaI GCGC 2 cut(s) 157, 215
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 118, 313, 808
Hin6I GCGC 2 cut(s) 155, 213
HinP1I GCGC 2 cut(s) 155, 213
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HinfI GANTC 7 cut(s) 145, 235, 280, 395, 608, 670, 884
HpaI GTTAAC 1 cut(s) 931
HpaII CCGG 2 cut(s) 623, 683
Hpy166II GTNNAC 3 cut(s) 431, 478, 931
Hpy188I TCNGA 8 cut(s) 60, 124, 144, 198, 234, 279, 400, 613
Hpy188III TCNNGA 6 cut(s) 97, 512, 695, 713, 997, 1017
Hpy8I GTNNAC 3 cut(s) 431, 478, 931
Hpy99I CGWCG 3 cut(s) 74, 209, 231
HpyCH4IV ACGT 2 cut(s) 601, 843
HpyCH4V TGCA 5 cut(s) 171, 742, 748, 793, 990
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 311, 855, 962, 976
HpyF3I CTNAG 3 cut(s) 422, 714, 960
HpySE526I ACGT 2 cut(s) 601, 843
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 118, 313, 808
HspAI GCGC 2 cut(s) 155, 213
Ksp22I TGATCA 1 cut(s) 801
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 6 cut(s) 117, 182, 801, 808, 837, 916
LmnI GCTCC 3 cut(s) 295, 319, 595
Lsp1109I GCAGC 4 cut(s) 421, 805, 808, 968
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 765
MaeII ACGT 2 cut(s) 601, 843
MaeIII GTNAC 2 cut(s) 667, 860
MalI GATC 6 cut(s) 119, 184, 803, 810, 839, 918
MboI GATC 6 cut(s) 117, 182, 801, 808, 837, 916
MboII GAAGA 9 cut(s) 37, 98, 211, 246, 505, 556, 602, 843, 985
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 390, 851
MluCI AATT 7 cut(s) 125, 471, 482, 500, 559, 638, 750
MlyI GAGTC 2 cut(s) 274, 664
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 6 cut(s) 102, 558, 641, 867, 879, 930
MspA1I CMGCKG 3 cut(s) 376, 799, 959
MspI CCGG 2 cut(s) 623, 683
MspR9I CCNGG 2 cut(s) 294, 623
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 2 cut(s) 155, 853
MwoI GCNNNNNNNGC 5 cut(s) 71, 311, 855, 962, 976
NciI CCSGG 1 cut(s) 623
NcoI CCATGG 1 cut(s) 309
NdeII GATC 6 cut(s) 117, 182, 801, 808, 837, 916
NlaIII CATG 3 cut(s) 118, 313, 808
NlaIV GGNNCC 6 cut(s) 291, 315, 597, 627, 687, 849
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 667
NspV TTCGAA 2 cut(s) 129, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 5 cut(s) 145, 235, 395, 608, 884
PkrI GCNGC 8 cut(s) 212, 307, 321, 375, 411, 795, 798, 958
PleI GAGTC 2 cut(s) 274, 664
PpsI GAGTC 2 cut(s) 274, 664
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 906
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 6 cut(s) 291, 315, 597, 627, 687, 849
PspOMI GGGCCC 1 cut(s) 847
PspPI GGNCC 4 cut(s) 296, 685, 847, 848
PstI CTGCAG 2 cut(s) 795, 992
PstNI CAGNNNCTG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 2 cut(s) 799, 959
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 6 cut(s) 102, 558, 641, 867, 879, 930
SatI GCNGC 8 cut(s) 211, 306, 320, 374, 410, 794, 797, 957
Sau3AI GATC 6 cut(s) 117, 182, 801, 808, 837, 916
Sau96I GGNCC 4 cut(s) 296, 685, 847, 848
SchI GAGTC 2 cut(s) 274, 664
ScrFI CCNGG 2 cut(s) 294, 623
SduI GDGCHC 2 cut(s) 390, 851
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 2 cut(s) 791, 988
SfuI TTCGAA 2 cut(s) 129, 491
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 7 cut(s) 125, 471, 482, 500, 559, 638, 750
SsiI CCGC 9 cut(s) 137, 210, 305, 317, 320, 374, 674, 851, 858
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 292, 621
StyI CCWWGG 2 cut(s) 309, 436
TaiI ACGT 2 cut(s) 604, 846
TaqI TCGA 5 cut(s) 129, 238, 384, 491, 981
TasI AATT 7 cut(s) 125, 471, 482, 500, 559, 638, 750
TatI WGTACW 1 cut(s) 187
TauI GCSGC 4 cut(s) 213, 308, 322, 376
TfiI GAWTC 5 cut(s) 145, 235, 395, 608, 884
Tru1I TTAA 6 cut(s) 102, 558, 641, 867, 879, 930
Tru9I TTAA 6 cut(s) 102, 558, 641, 867, 879, 930
TscAI CASTG 2 cut(s) 24, 397
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 4 cut(s) 409, 793, 796, 956
Tsp45I GTSAC 1 cut(s) 667
TspRI CASTG 2 cut(s) 24, 397
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 2 cut(s) 125, 750
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.