Rroxscaffold_7G00165180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012583
Physical Location & Seq
Reverse (-)
7047193 .. 7049239
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165180.1

Sequence Viewer

Length: 1014 bp
ATGGAAGCAGAGCAGCAAGGACCAACAACAATGGAGCCCATCCTCGGCTACTACACCTCGTACTTTTCACCTCGGGAGTTCGAAATCGCCGAAATCATGGTCGGACTTCCTGACATCATCTCCGAATTAGACGACCGCCCTCGAATTCGGGTCCCGTGGGGCCACAAGAAAAAGAGATCTGCGCTGGCTGTACAAGACCAAAGAGTTCGGAACAACAAGTCTTCGTCGTCGACTGTGGTTCGGCTTCGGTTGCCGTCGTCCTCGTCTTCCCCGAATCCTGGGTCGAAAGTTCTGGCCACTAATGTTGTCAAGGTCGAGAGGTCGAGCCCCAACACGCCGCTGTCGTTTGAATCCGATGAGAAGCCTAGTCAGTTGAGAAGTAAAGTGGTGGTCGGAAAGAGGAAAAGAGAGGAATGGCTGGAGGTGATAAATGGACTAGTGAAGCGCAAAGAATTGCTACATAAAGAGATACAGAATGTGAAGGATTATAAAGAAAAGCTGATTAAATTTAATTTGGTATTGCAGTCAAGGAAGCAAGAGCTGAAAAAGCAAAGATTGATTCAGAAAGAACCTCAATCGAAAATTGAGGAACCAAAGCTGAATCTTGATATGAAATTGGGCCAACCCACGCCCATACAAACATCCATAGTCATTTGTGCCCCTACGATTGTTGAACAAGAGCGTTATCATCAACTAAGTGCTCCTCATCAGTATCAAACCCTGGATCACACCGCTCAAACTCGAGGCGCAGTAATTATTGAGAATCATGGGTATCTATCATCTACTACTCAAGTGGCCTCAACCTCTTTGCCATCTAACAGTGTCAATGCTACTGGATTGAGACTGGTAAGCTGCAATAGCAATGGAGGCTTAATTCCTGATCACGGCTTTTCTTCTTTTCCTAACCAGAATCGTGGCCCCGCCTTTGTTCCCAAGAATCTCTATAAGGCTGTGTCTGCACAAAGAAGGCATGAGAGATATCAGAAAAATAGGGTTAAAAAACCTCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.19

Weight (kDa)

9.91

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 734
AccI GTMKAC 1 cut(s) 230
AciI CCGC 4 cut(s) 136, 338, 732, 921
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 144, 506
AfaI GTAC 2 cut(s) 62, 192
AfiI CCNNNNNNNGG 3 cut(s) 44, 278, 884
AgsI TTSAA 2 cut(s) 350, 674
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 2 cut(s) 277, 720
AluBI AGCT 4 cut(s) 499, 541, 598, 852
AluI AGCT 4 cut(s) 499, 541, 598, 852
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 1 cut(s) 732
Ama87I CYCGRG 2 cut(s) 72, 741
AoxI GGCC 5 cut(s) 160, 294, 619, 795, 916
ApeKI GCWGC 2 cut(s) 13, 852
ApoI RAATTY 2 cut(s) 144, 506
ArsI GACNNNNNNTTYG 4 cut(s) 84, 116, 266, 298
AspLEI GCGC 3 cut(s) 184, 447, 749
AspS9I GGNCC 5 cut(s) 20, 151, 160, 619, 917
AsuHPI GGTGA 2 cut(s) 60, 436
AsuII TTCGAA 1 cut(s) 81
AvaI CYCGRG 2 cut(s) 72, 741
AvaII GGWCC 2 cut(s) 20, 151
BaeGI GKGCMC 1 cut(s) 661
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 2 cut(s) 39, 329
BbsI GAAGAC 2 cut(s) 213, 258
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 2 cut(s) 25, 839
BccI CCATC 2 cut(s) 47, 820
BceAI ACGGC 2 cut(s) 238, 901
BciT130I CCWGG 2 cut(s) 279, 722
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 1 cut(s) 835
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 2 cut(s) 366, 437
BglII AGATCT 1 cut(s) 176
BisI GCNGC 3 cut(s) 14, 338, 853
BlsI GCNGC 3 cut(s) 15, 339, 854
Bme1390I CCNGG 2 cut(s) 279, 722
Bme18I GGWCC 2 cut(s) 20, 151
BmeT110I CYCGRG 2 cut(s) 72, 741
BmgT120I GGNCC 5 cut(s) 20, 151, 160, 619, 917
BmiI GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 919
BmrFI CCNGG 2 cut(s) 279, 722
BpiI GAAGAC 2 cut(s) 213, 258
BpmI CTGGAG 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 278, 884
Bse1I ACTGG 2 cut(s) 838, 849
Bse3DI GCAATG 1 cut(s) 868
BseBI CCWGG 2 cut(s) 279, 722
BseDI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BseGI GGATG 2 cut(s) 39, 641
BseLI CCNNNNNNNGG 3 cut(s) 44, 278, 884
BseMI GCAATG 1 cut(s) 868
BseNI ACTGG 2 cut(s) 838, 849
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 2 cut(s) 25, 839
BsgI GTGCAG 1 cut(s) 942
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 5 cut(s) 162, 296, 621, 797, 918
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 703
BsiHKCI CYCGRG 2 cut(s) 72, 741
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 44, 278, 884
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 5 cut(s) 162, 296, 621, 797, 918
BsoBI CYCGRG 2 cut(s) 72, 741
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 39, 329, 661, 703
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 176, 724, 880
BspACI CCGC 4 cut(s) 136, 338, 732, 921
BspANI GGCC 5 cut(s) 162, 296, 621, 797, 918
BspLI GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 919
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 868
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 2 cut(s) 838, 849
BssECI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BssMI GATC 3 cut(s) 176, 724, 880
Bst2UI CCWGG 2 cut(s) 279, 722
Bst4CI ACNGT 2 cut(s) 235, 821
BstAUI TGTACA 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 39, 641
BstHHI GCGC 3 cut(s) 184, 447, 749
BstKTI GATC 3 cut(s) 179, 727, 883
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 3 cut(s) 176, 724, 880
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 5 cut(s) 250, 547, 858, 867, 956
BstNI CCWGG 2 cut(s) 279, 722
BstSCI CCNGG 2 cut(s) 277, 720
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 2 cut(s) 25, 839
BstV2I GAAGAC 2 cut(s) 213, 258
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 914
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 5 cut(s) 162, 296, 621, 797, 918
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 39, 641
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 3 cut(s) 184, 447, 749
Cfr13I GGNCC 5 cut(s) 20, 151, 160, 619, 917
Csp6I GTAC 2 cut(s) 61, 191
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 97, 767, 971
CviQI GTAC 2 cut(s) 61, 191
DdeI CTNAG 1 cut(s) 695
DpnI GATC 3 cut(s) 178, 726, 882
DpnII GATC 3 cut(s) 176, 724, 880
EaeI YGGCCR 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 39, 329
Eco32I GATATC 1 cut(s) 980
Eco47I GGWCC 2 cut(s) 20, 151
Eco88I CYCGRG 2 cut(s) 72, 741
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 277, 720
EcoRV GATATC 1 cut(s) 980
EcoT38I GRGCYC 2 cut(s) 39, 329
FaeI CATG 3 cut(s) 100, 770, 974
FaiI YATR 9 cut(s) 98, 462, 489, 611, 635, 647, 768, 945, 972
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 96, 766, 970
FauI CCCGC 1 cut(s) 928
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 3 cut(s) 14, 338, 853
FokI GGATG 2 cut(s) 26, 628
FriOI GRGCYC 2 cut(s) 39, 329
Fsp4HI GCNGC 3 cut(s) 14, 338, 853
FspBI CTAG 2 cut(s) 366, 437
GlaI GCGC 3 cut(s) 183, 446, 748
GluI GCNGC 3 cut(s) 14, 338, 853
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 5 cut(s) 162, 296, 621, 797, 918
HhaI GCGC 3 cut(s) 184, 447, 749
Hin1II CATG 3 cut(s) 100, 770, 974
Hin6I GCGC 3 cut(s) 182, 445, 747
HinP1I GCGC 3 cut(s) 182, 445, 747
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 7 cut(s) 274, 350, 559, 601, 763, 910, 937
HphI GGTGA 2 cut(s) 60, 436
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 7 cut(s) 104, 124, 210, 355, 395, 564, 984
Hpy188III TCNNGA 5 cut(s) 74, 110, 316, 605, 878
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 3 cut(s) 229, 232, 259
HpyAV CCTTC 2 cut(s) 475, 960
HpyCH4III ACNGT 2 cut(s) 235, 821
HpyCH4V TGCA 3 cut(s) 523, 855, 959
HpyF10VI GCNNNNNNNGC 5 cut(s) 250, 547, 858, 867, 956
HpyF3I CTNAG 1 cut(s) 695
Hsp92II CATG 3 cut(s) 100, 770, 974
HspAI GCGC 3 cut(s) 182, 445, 747
KflI GGGWCCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 3 cut(s) 176, 724, 880
LmnI GCTCC 2 cut(s) 34, 706
Lsp1109I GCAGC 2 cut(s) 25, 839
MaeI CTAG 2 cut(s) 366, 437
MalI GATC 3 cut(s) 178, 726, 882
MbiI CCGCTC 1 cut(s) 734
MboI GATC 3 cut(s) 176, 724, 880
MboII GAAGA 3 cut(s) 213, 258, 885
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 39, 329, 661, 703
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 9 cut(s) 125, 144, 452, 506, 511, 582, 614, 753, 873
MluNI TGGCCA 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 82, 373
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 4 cut(s) 504, 510, 872, 996
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 279, 722
MvaI CCWGG 2 cut(s) 279, 722
MwoI GCNNNNNNNGC 5 cut(s) 250, 547, 858, 867, 956
NdeII GATC 3 cut(s) 176, 724, 880
NlaIII CATG 3 cut(s) 100, 770, 974
NlaIV GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 919
NmeAIII GCCGAG 1 cut(s) 24
NspV TTCGAA 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 741
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 269, 341
PfeI GAWTC 7 cut(s) 274, 350, 559, 601, 763, 910, 937
PkrI GCNGC 3 cut(s) 15, 339, 854
PpuMI RGGWCCY 1 cut(s) 151
PsiI TTATAA 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 277, 720
PspGI CCWGG 2 cut(s) 277, 720
PspN4I GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 919
PspPI GGNCC 5 cut(s) 20, 151, 160, 619, 917
PspPPI RGGWCCY 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 741
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 2 cut(s) 62, 192
RsaNI GTAC 2 cut(s) 61, 191
SalI GTCGAC 1 cut(s) 229
SaqAI TTAA 4 cut(s) 504, 510, 872, 996
SatI GCNGC 3 cut(s) 14, 338, 853
Sau3AI GATC 3 cut(s) 176, 724, 880
Sau96I GGNCC 5 cut(s) 20, 151, 160, 619, 917
ScrFI CCNGG 2 cut(s) 279, 722
SduI GDGCHC 4 cut(s) 39, 329, 661, 703
Sfr274I CTCGAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 20, 151
SlaI CTCGAG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 741, 789
SmoI CTYRAG 2 cut(s) 741, 789
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 9 cut(s) 125, 144, 452, 506, 511, 582, 614, 753, 873
SsiI CCGC 4 cut(s) 136, 338, 732, 921
SspMI CTAG 2 cut(s) 366, 437
StyD4I CCNGG 2 cut(s) 277, 720
TaaI ACNGT 2 cut(s) 235, 821
TaqI TCGA 8 cut(s) 81, 142, 230, 284, 315, 323, 578, 742
TasI AATT 9 cut(s) 125, 144, 452, 506, 511, 582, 614, 753, 873
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 7 cut(s) 274, 350, 559, 601, 763, 910, 937
Tru1I TTAA 4 cut(s) 504, 510, 872, 996
Tru9I TTAA 4 cut(s) 504, 510, 872, 996
TscAI CASTG 1 cut(s) 826
TseI GCWGC 2 cut(s) 13, 852
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 1 cut(s) 826
VpaK11BI GGWCC 2 cut(s) 20, 151
XapI RAATTY 2 cut(s) 144, 506
XhoI CTCGAG 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 2 cut(s) 366, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.