Rw6G037390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012583
Physical Location & Seq
Forward (+)
61715410 .. 61718232
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037390.1

Sequence Viewer

Length: 1050 bp
ATGTATTTAAGCCCAGAGCAGCAAGGACCAACAACAATGGAGCCCATCCTCGGCTACTACACCTCGTACTTCTCACCTCGGGAGTTCGAAATCGCCGAAATCATGGTCGGACTTCCTGACATCATCTCCGAATTAGACGACCGCCCTCGAATTCGGGTCCCGTGGGGCCACAAGAAGAAGAGATCTGCGCTGGCTGTACAAGACCAAAGAGTTCGGAACAACAAGTCGTCGTCGTCGTCGACTGTGGTTCGGCTTCGGTTGCTGTCGTCCTCGTCTTCCCCGAGTCCTGGGTCGAAAGTTCCGGCCACTAATGTTGTCAAGGTCGAGAGGTCGAGCCCCAACACGCCGCTGTCGTTTGAATCCGATGAGAAGCCTAGTCAGTTGAGAAGTAAAGTGGTGGTCGGAAAGAGGAAAAGAGAGGAATGGCTGGAGGTGATAAATGGACTAGTGAAGCGCAAAGAATTGCTACATAAAGAGATACAGAATGTGAAGGATTATAAGGAAAAGCTGATTAAATTTAATGTGGTATTGCAGTCGAGGAAGCAAGAGCTGAAAATGCAAAGATTGATTCAGAAAGAACCTCGATCGAAAATTGAGGAACAAAAGCTGAATCTTGATATGAAATTGGGCCAACCCACGCCCATACAAACATCCATAGTCATTTGTGCCCCTACTATTGTTGGACAAGAGCGTTATCATCAACTAAGTGCTCCTCATCAGTATCAAACCCTGGATCACACCGCTCAAACTCGAGGCGCAGTAATTATTGAGAATCATGGGTATCCATCATCTACTACTCAAGTGGCCTCAACCTCTTTGCCATCTAACAGTGTCAATGCTACTGGATTGAGATTGGTAAGCTGCAATAACAATGGAGGCTTAATTCCTGATCACGGCTTTTCTTCTTTTCCTAACCAGAATCGCGGCTCCGCCTTTGTTACCAAGAATCTCTATAGGGCTATGTCTGCACAAAGAAGGCATGAGAGATATCAGAAAAATAGGGTTAAAAGAACCTCTCTTTCAGGTCAAAGACGGAGTCAAGAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

39.57

Weight (kDa)

10.09

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 924
AciI CCGC 5 cut(s) 142, 347, 741, 924, 930
AclWI GGATC 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 2 cut(s) 150, 515
AfaI GTAC 2 cut(s) 68, 198
AfiI CCNNNNNNNGG 3 cut(s) 50, 287, 893
AgsI TTSAA 1 cut(s) 359
AhlI ACTAGT 1 cut(s) 445
AjnI CCWGG 2 cut(s) 286, 729
AluBI AGCT 4 cut(s) 508, 550, 607, 861
AluI AGCT 4 cut(s) 508, 550, 607, 861
Alw21I GWGCWC 1 cut(s) 712
AlwI GGATC 1 cut(s) 741
Ama87I CYCGRG 3 cut(s) 78, 280, 750
AoxI GGCC 4 cut(s) 166, 303, 628, 804
ApeKI GCWGC 2 cut(s) 19, 861
ApoI RAATTY 2 cut(s) 150, 515
ArsI GACNNNNNNTTYG 3 cut(s) 90, 122, 1021
AspLEI GCGC 3 cut(s) 190, 456, 758
AspS9I GGNCC 4 cut(s) 26, 157, 166, 628
AsuHPI GGTGA 2 cut(s) 66, 445
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 3 cut(s) 78, 280, 750
AvaII GGWCC 2 cut(s) 26, 157
BaeGI GKGCMC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 45, 338
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 2 cut(s) 31, 848
BccI CCATC 3 cut(s) 53, 793, 829
BceAI ACGGC 1 cut(s) 910
BciT130I CCWGG 2 cut(s) 288, 731
BciVI GTATCC 1 cut(s) 792
BclI TGATCA 1 cut(s) 889
BcuI ACTAGT 1 cut(s) 445
BfaI CTAG 2 cut(s) 375, 446
BfmI CTRYAG 1 cut(s) 952
BfuI GTATCC 1 cut(s) 792
BglII AGATCT 1 cut(s) 182
BisI GCNGC 4 cut(s) 20, 347, 862, 925
BlsI GCNGC 4 cut(s) 21, 348, 863, 926
Bme1390I CCNGG 2 cut(s) 288, 731
Bme18I GGWCC 2 cut(s) 26, 157
BmeT110I CYCGRG 3 cut(s) 78, 280, 750
BmgT120I GGNCC 4 cut(s) 26, 157, 166, 628
BmiI GGNNCC 5 cut(s) 42, 158, 159, 167, 928
BmrFI CCNGG 2 cut(s) 288, 731
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 783
BsaJI CCNNGG 5 cut(s) 49, 77, 161, 287, 729
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 287, 893
Bse1I ACTGG 1 cut(s) 847
BseBI CCWGG 2 cut(s) 288, 731
BseDI CCNNGG 5 cut(s) 49, 77, 161, 287, 729
BseGI GGATG 2 cut(s) 45, 650
BseLI CCNNNNNNNGG 3 cut(s) 50, 287, 893
BseNI ACTGG 1 cut(s) 847
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 2 cut(s) 31, 848
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 1 cut(s) 924
Bsh1285I CGRYCG 2 cut(s) 142, 587
BshFI GGCC 4 cut(s) 168, 305, 630, 806
BsiEI CGRYCG 2 cut(s) 142, 587
BsiHKAI GWGCWC 1 cut(s) 712
BsiHKCI CYCGRG 3 cut(s) 78, 280, 750
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 50, 287, 893
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 4 cut(s) 168, 305, 630, 806
BsoBI CYCGRG 3 cut(s) 78, 280, 750
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 4 cut(s) 45, 338, 670, 712
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 4 cut(s) 182, 584, 733, 889
BspACI CCGC 5 cut(s) 142, 347, 741, 924, 930
BspANI GGCC 4 cut(s) 168, 305, 630, 806
BspFNI CGCG 1 cut(s) 924
BspLI GGNNCC 5 cut(s) 42, 158, 159, 167, 928
BspPI GGATC 1 cut(s) 741
BspT104I TTCGAA 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 847
BssECI CCNNGG 5 cut(s) 49, 77, 161, 287, 729
BssMI GATC 4 cut(s) 182, 584, 733, 889
Bst2UI CCWGG 2 cut(s) 288, 731
Bst4CI ACNGT 2 cut(s) 244, 830
Bst6I CTCTTC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 704
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 45, 650
BstFNI CGCG 1 cut(s) 924
BstHHI GCGC 3 cut(s) 190, 456, 758
BstKTI GATC 4 cut(s) 185, 587, 736, 892
BstMBI GATC 4 cut(s) 182, 584, 733, 889
BstMCI CGRYCG 2 cut(s) 142, 587
BstMWI GCNNNNNNNGC 3 cut(s) 259, 556, 965
BstNI CCWGG 2 cut(s) 288, 731
BstSCI CCNGG 2 cut(s) 286, 729
BstSFI CTRYAG 1 cut(s) 952
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 2 cut(s) 31, 848
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 4 cut(s) 168, 305, 630, 806
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 45, 650
BtsIMutI CAGTG 1 cut(s) 835
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 3 cut(s) 190, 456, 758
Cfr13I GGNCC 4 cut(s) 26, 157, 166, 628
Csp6I GTAC 2 cut(s) 67, 197
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 3 cut(s) 103, 776, 980
CviQI GTAC 2 cut(s) 67, 197
DdeI CTNAG 1 cut(s) 704
DpnI GATC 4 cut(s) 184, 586, 735, 891
DpnII GATC 4 cut(s) 182, 584, 733, 889
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EciI GGCGGA 1 cut(s) 919
Eco24I GRGCYC 2 cut(s) 45, 338
Eco32I GATATC 1 cut(s) 989
Eco47I GGWCC 2 cut(s) 26, 157
Eco88I CYCGRG 3 cut(s) 78, 280, 750
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 286, 729
EcoRV GATATC 1 cut(s) 989
EcoT38I GRGCYC 2 cut(s) 45, 338
FaeI CATG 3 cut(s) 106, 779, 983
FaqI GGGAC 1 cut(s) 143
FatI CATG 3 cut(s) 102, 775, 979
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 4 cut(s) 20, 347, 862, 925
FokI GGATG 2 cut(s) 32, 637
FriOI GRGCYC 2 cut(s) 45, 338
Fsp4HI GCNGC 4 cut(s) 20, 347, 862, 925
FspBI CTAG 2 cut(s) 375, 446
GlaI GCGC 3 cut(s) 189, 455, 757
GluI GCNGC 4 cut(s) 20, 347, 862, 925
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 4 cut(s) 168, 305, 630, 806
HapII CCGG 1 cut(s) 302
HhaI GCGC 3 cut(s) 190, 456, 758
Hin1II CATG 3 cut(s) 106, 779, 983
Hin6I GCGC 3 cut(s) 188, 454, 756
HinP1I GCGC 3 cut(s) 188, 454, 756
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 8 cut(s) 283, 359, 568, 610, 772, 919, 946, 1036
HpaII CCGG 1 cut(s) 302
HphI GGTGA 2 cut(s) 66, 445
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 7 cut(s) 110, 130, 216, 364, 404, 573, 993
Hpy188III TCNNGA 6 cut(s) 80, 116, 325, 614, 887, 1040
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 4 cut(s) 232, 235, 238, 241
HpyAV CCTTC 2 cut(s) 484, 969
HpyCH4III ACNGT 2 cut(s) 244, 830
HpyCH4V TGCA 4 cut(s) 532, 559, 864, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 556, 965
HpyF3I CTNAG 1 cut(s) 704
Hsp92II CATG 3 cut(s) 106, 779, 983
HspAI GCGC 3 cut(s) 188, 454, 756
KflI GGGWCCC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 4 cut(s) 182, 584, 733, 889
LmnI GCTCC 3 cut(s) 40, 715, 932
Lsp1109I GCAGC 2 cut(s) 31, 848
MaeI CTAG 2 cut(s) 375, 446
MaeIII GTNAC 1 cut(s) 937
MalI GATC 4 cut(s) 184, 586, 735, 891
MbiI CCGCTC 1 cut(s) 743
MboI GATC 4 cut(s) 182, 584, 733, 889
MboII GAAGA 4 cut(s) 187, 190, 267, 894
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 4 cut(s) 45, 338, 670, 712
MluCI AATT 8 cut(s) 131, 150, 461, 515, 591, 623, 762, 882
MlyI GAGTC 2 cut(s) 292, 1045
MmeI TCCRAC 3 cut(s) 88, 382, 661
MseI TTAA 5 cut(s) 8, 513, 519, 881, 1005
MspA1I CMGCKG 1 cut(s) 349
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 288, 731
MvaI CCWGG 2 cut(s) 288, 731
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 3 cut(s) 259, 556, 965
NdeII GATC 4 cut(s) 182, 584, 733, 889
NlaIII CATG 3 cut(s) 106, 779, 983
NlaIV GGNNCC 5 cut(s) 42, 158, 159, 167, 928
NmeAIII GCCGAG 1 cut(s) 30
NspV TTCGAA 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 750
PcsI WCGNNNNNNNCGW 5 cut(s) 93, 233, 236, 278, 350
PfeI GAWTC 6 cut(s) 359, 568, 610, 772, 919, 946
PflFI GACNNNGTC 1 cut(s) 1035
PkrI GCNGC 4 cut(s) 21, 348, 863, 926
Ple19I CGATCG 1 cut(s) 587
PleI GAGTC 2 cut(s) 291, 1044
PpsI GAGTC 2 cut(s) 291, 1044
PpuMI RGGWCCY 1 cut(s) 157
PsiI TTATAA 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 286, 729
PspGI CCWGG 2 cut(s) 286, 729
PspN4I GGNNCC 5 cut(s) 42, 158, 159, 167, 928
PspPI GGNCC 4 cut(s) 26, 157, 166, 628
PspPPI RGGWCCY 1 cut(s) 157
PspXI VCTCGAGB 1 cut(s) 750
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 1035
PvuI CGATCG 1 cut(s) 587
RsaI GTAC 2 cut(s) 68, 198
RsaNI GTAC 2 cut(s) 67, 197
SalI GTCGAC 1 cut(s) 238
SaqAI TTAA 5 cut(s) 8, 513, 519, 881, 1005
SatI GCNGC 4 cut(s) 20, 347, 862, 925
Sau3AI GATC 4 cut(s) 182, 584, 733, 889
Sau96I GGNCC 4 cut(s) 26, 157, 166, 628
SchI GAGTC 2 cut(s) 292, 1045
ScrFI CCNGG 2 cut(s) 288, 731
SduI GDGCHC 4 cut(s) 45, 338, 670, 712
SfcI CTRYAG 1 cut(s) 952
Sfr274I CTCGAG 1 cut(s) 750
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 2 cut(s) 26, 157
SlaI CTCGAG 1 cut(s) 750
SmlI CTYRAG 2 cut(s) 750, 798
SmoI CTYRAG 2 cut(s) 750, 798
SpeI ACTAGT 1 cut(s) 445
Sse9I AATT 8 cut(s) 131, 150, 461, 515, 591, 623, 762, 882
SsiI CCGC 5 cut(s) 142, 347, 741, 924, 930
SspMI CTAG 2 cut(s) 375, 446
StyD4I CCNGG 2 cut(s) 286, 729
TaaI ACNGT 2 cut(s) 244, 830
TasI AATT 8 cut(s) 131, 150, 461, 515, 591, 623, 762, 882
TatI WGTACW 1 cut(s) 196
TauI GCSGC 2 cut(s) 349, 927
TfiI GAWTC 6 cut(s) 359, 568, 610, 772, 919, 946
Tru1I TTAA 5 cut(s) 8, 513, 519, 881, 1005
Tru9I TTAA 5 cut(s) 8, 513, 519, 881, 1005
TscAI CASTG 1 cut(s) 835
TseI GCWGC 2 cut(s) 19, 861
TspDTI ATGAA 1 cut(s) 635
TspGWI ACGGA 1 cut(s) 1048
TspRI CASTG 1 cut(s) 835
Tth111I GACNNNGTC 1 cut(s) 1035
VpaK11BI GGWCC 2 cut(s) 26, 157
XapI RAATTY 2 cut(s) 150, 515
XhoI CTCGAG 1 cut(s) 750
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 2 cut(s) 375, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.