FvH4_2g38421

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014675
Physical Location & Seq
Forward (+)
27802768 .. 27803265
498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38421.t1

Sequence Viewer

Length: 393 bp
ATGCACGACGATGACAGCTGTGACAACTGGCGGTGCTCGGCGTTGAACAATCCGGTGCTTTATTTGGCCGCGGCGTTTTTGGCCGTGTTCCTTTTGCTGCGGCTGGGGCTCTCCGTCTGGATTTTCTACGAGAAGCGGAGGCAATTGGTGGCTCAACGACACGATCACATAATATCTTCAGCTTCACAAGACGTGGAGGCTAATGGGAGGGTTACGAGTGGTACTACTGGTCATGTTCATCAAAGAGAACGGGAATTGGAGAGTGTAAATAGTGGCGGTGAGGCTAGCGATTGCAAGGAAGGGAAGGTTTCCGACGGCAAGGTTTTGGTGATAATGGCTGGGAATGACAGACCTACCTTCTTGGCCACGCCAATGGTGAAAGAAAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.45

Weight (kDa)

6.18

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 6 cut(s) 31, 69, 71, 100, 136, 276
AcoI YGGCCR 3 cut(s) 66, 81, 363
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 46
AjiI CACGTC 1 cut(s) 193
AluBI AGCT 2 cut(s) 18, 182
AluI AGCT 2 cut(s) 18, 182
Alw21I GWGCWC 1 cut(s) 38
AoxI GGCC 3 cut(s) 66, 81, 363
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 290, 340, 388
AsuNHI GCTAGC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 365
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 84
BceAI ACGGC 2 cut(s) 68, 331
BfaI CTAG 1 cut(s) 285
BisI GCNGC 4 cut(s) 69, 72, 98, 101
BlsI GCNGC 4 cut(s) 70, 73, 99, 102
BmgBI CACGTC 1 cut(s) 193
BmtI GCTAGC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 32, 232
BseDI CCNNGG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 32, 232
BseXI GCAGC 1 cut(s) 84
BseYI CCCAGC 2 cut(s) 103, 338
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 68, 83, 365
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 53
BsnI GGCC 3 cut(s) 68, 83, 365
Bsp1286I GDGCHC 2 cut(s) 38, 111
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 6 cut(s) 31, 69, 71, 100, 136, 276
BspANI GGCC 3 cut(s) 68, 83, 365
BspFNI CGCG 1 cut(s) 71
BspOI GCTAGC 1 cut(s) 288
BsrI ACTGG 2 cut(s) 32, 232
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 80, 106
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuRI GGCC 3 cut(s) 68, 83, 365
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 286
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 233
CviQI GTAC 1 cut(s) 222
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 3 cut(s) 66, 81, 363
Eco24I GRGCYC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 236
FaiI YATR 2 cut(s) 170, 234
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 69, 72, 98, 101
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 69, 72, 98, 101
FspBI CTAG 1 cut(s) 285
GluI GCNGC 4 cut(s) 69, 72, 98, 101
GsaI CCCAGC 2 cut(s) 107, 342
HaeIII GGCC 3 cut(s) 68, 83, 365
HapII CCGG 1 cut(s) 53
Hin1II CATG 1 cut(s) 236
HpaII CCGG 1 cut(s) 53
HphI GGTGA 3 cut(s) 290, 340, 388
Hpy188I TCNGA 2 cut(s) 313, 392
Hpy188III TCNNGA 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 11, 317
HpyAV CCTTC 3 cut(s) 293, 298, 367
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 4, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 106
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 236
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 13, 66, 89, 103, 213, 324
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 20, 211
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 168
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 38, 111
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 143, 254, 386
MluNI TGGCCA 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 4 cut(s) 132, 190, 201, 274
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MslI CAYNNNNRTG 2 cut(s) 9, 371
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 2 cut(s) 18, 71
MspI CCGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 143
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 80, 106
NdeII GATC 1 cut(s) 163
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 20
PkrI GCNGC 4 cut(s) 70, 73, 99, 102
PspFI CCCAGC 2 cut(s) 103, 338
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 9, 371
SacII CCGCGG 1 cut(s) 72
SatI GCNGC 4 cut(s) 69, 72, 98, 101
Sau3AI GATC 1 cut(s) 163
SduI GDGCHC 2 cut(s) 38, 111
SetI ASST 7 cut(s) 20, 184, 195, 309, 324, 355, 359
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SmiMI CAYNNNNRTG 2 cut(s) 9, 371
Sse9I AATT 3 cut(s) 143, 254, 386
SsiI CCGC 6 cut(s) 31, 69, 71, 100, 136, 276
SspMI CTAG 1 cut(s) 285
TaiI ACGT 1 cut(s) 195
TasI AATT 3 cut(s) 143, 254, 386
TauI GCSGC 3 cut(s) 71, 74, 103
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 103
XapI RAATTY 1 cut(s) 386
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.