RLG00000031581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014675
Physical Location & Seq
Reverse (-)
6383474 .. 6384835
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031581

Sequence Viewer

Length: 501 bp
ATGGTTTTCTTCCATTCTCTGGTAGCGGCGCTGCTGGTATTGCGAGCCGGCCAGCGCAGATCTGGTATGGGCTGGGGGATGGCGTCGGGGCGACGTGATCTGGTTGGGGCTATCCTTCGTTGTCGTGGTGGTTCTGTCTGGTGGAGCGTCGGTGATCGACATGATGGTGGTGGGATACATTGGAGATGGTGGAGGTGGATGACTCTTGGCTTATGGAGGTTGCGCAGAGGTGAAGGTGGTGTTAGGATGTTGATTGACGAGATCTGTGGCAATCTCGTCTGGGCTCATGATGCGTGGCGGTGGTTGGTGGCTCTGTGGGCATGGAGTTTGAAACTGGGGCGTTGGCTTGGGTTTGGGATGATGTATGGAGCTTGGTCAGTCACCGACGGTGGGTTGGATATCAGGTCGTGGTGTAGCTCGGACGGTGACCTGGCCGATGTGAGAAAACTTGGACAGTTATGGCCGGCACATGGTGTTTTGGAAATTTACTATTTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.98

Weight (kDa)

10.16

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 19
AciI CCGC 2 cut(s) 26, 298
AcoI YGGCCR 3 cut(s) 49, 432, 461
AcsI RAATTY 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 19, 390, 470
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 2 cut(s) 371, 417
AluI AGCT 2 cut(s) 371, 417
AoxI GGCC 3 cut(s) 49, 432, 461
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 483
AspLEI GCGC 3 cut(s) 31, 57, 225
AsuHPI GGTGA 4 cut(s) 164, 242, 373, 437
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 18
BccI CCATC 3 cut(s) 73, 158, 180
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 497
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 2 cut(s) 59, 261
BisI GCNGC 2 cut(s) 27, 32
BlsI GCNGC 2 cut(s) 28, 33
Bme1390I CCNGG 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 390, 470
Bse118I RCCGGY 2 cut(s) 47, 463
Bse1I ACTGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 431
BseGI GGATG 4 cut(s) 84, 204, 252, 363
BseLI CCNNNNNNNGG 3 cut(s) 19, 390, 470
BseNI ACTGG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 3 cut(s) 51, 434, 463
BsiSI CCGG 2 cut(s) 48, 464
BslI CCNNNNNNNGG 3 cut(s) 19, 390, 470
BsnI GGCC 3 cut(s) 51, 434, 463
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 59, 97, 154, 261
BspACI CCGC 2 cut(s) 26, 298
BspANI GGCC 3 cut(s) 51, 434, 463
BspHI TCATGA 1 cut(s) 286
BsrFI RCCGGY 2 cut(s) 47, 463
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 2 cut(s) 47, 463
BssMI GATC 4 cut(s) 59, 97, 154, 261
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 3 cut(s) 389, 425, 456
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 45, 49, 53, 465
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 4 cut(s) 84, 204, 252, 363
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 31, 57, 225
BstKTI GATC 4 cut(s) 62, 100, 157, 264
BstMBI GATC 4 cut(s) 59, 97, 154, 261
BstMWI GCNNNNNNNGC 3 cut(s) 40, 290, 317
BstNI CCWGG 1 cut(s) 431
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 59, 261
BstYI RGATCY 2 cut(s) 59, 261
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 51, 434, 463
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 4 cut(s) 84, 204, 252, 363
Cac8I GCNNGC 4 cut(s) 45, 49, 53, 465
CciI TCATGA 1 cut(s) 286
CfoI GCGC 3 cut(s) 31, 57, 225
Cfr10I RCCGGY 2 cut(s) 47, 463
CseI GACGC 2 cut(s) 72, 136
CviAII CATG 4 cut(s) 161, 287, 321, 470
DpnI GATC 4 cut(s) 61, 99, 156, 263
DpnII GATC 4 cut(s) 59, 97, 154, 261
DraIII CACNNNGTG 1 cut(s) 473
EaeI YGGCCR 3 cut(s) 49, 432, 461
Eco24I GRGCYC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 400
Eco91I GGTNACC 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 4 cut(s) 164, 290, 324, 473
FaiI YATR 9 cut(s) 68, 162, 214, 288, 322, 366, 460, 471, 499
FatI CATG 4 cut(s) 160, 286, 320, 469
Fnu4HI GCNGC 2 cut(s) 27, 32
FokI GGATG 4 cut(s) 91, 211, 259, 370
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 27, 32
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 3 cut(s) 30, 56, 224
GluI GCNGC 2 cut(s) 27, 32
GsaI CCCAGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 51, 434, 463
HapII CCGG 2 cut(s) 48, 464
HgaI GACGC 2 cut(s) 72, 136
HhaI GCGC 3 cut(s) 31, 57, 225
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 4 cut(s) 164, 290, 324, 473
Hin6I GCGC 3 cut(s) 29, 55, 223
HinP1I GCGC 3 cut(s) 29, 55, 223
HinfI GANTC 1 cut(s) 202
HpaII CCGG 2 cut(s) 48, 464
HphI GGTGA 4 cut(s) 164, 242, 373, 437
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 1 cut(s) 287
Hpy99I CGWCG 4 cut(s) 88, 96, 152, 389
HpyAV CCTTC 2 cut(s) 125, 227
HpyCH4III ACNGT 3 cut(s) 389, 425, 456
HpyCH4IV ACGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 290, 317
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 4 cut(s) 164, 290, 324, 473
HspAI GCGC 3 cut(s) 29, 55, 223
KroI GCCGGC 2 cut(s) 47, 463
KroNI GCCGGC 2 cut(s) 49, 465
Kzo9I GATC 4 cut(s) 59, 97, 154, 261
LmnI GCTCC 2 cut(s) 144, 368
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 280
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 379, 425
MalI GATC 4 cut(s) 61, 99, 156, 263
MboI GATC 4 cut(s) 59, 97, 154, 261
MflI RGATCY 2 cut(s) 59, 261
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 483
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 3 cut(s) 186, 210, 221
MroNI GCCGGC 2 cut(s) 47, 463
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 2 cut(s) 48, 464
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 40, 290, 317
NaeI GCCGGC 2 cut(s) 49, 465
NdeII GATC 4 cut(s) 59, 97, 154, 261
NgoMIV GCCGGC 2 cut(s) 47, 463
NlaIII CATG 4 cut(s) 164, 290, 324, 473
NmuCI GTSAC 2 cut(s) 379, 425
NsbI TGCGCA 1 cut(s) 224
PagI TCATGA 1 cut(s) 286
PdiI GCCGGC 2 cut(s) 49, 465
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 2 cut(s) 28, 33
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 429
PspEI GGTNACC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 429
PsuI RGATCY 2 cut(s) 59, 261
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 2 cut(s) 27, 32
Sau3AI GATC 4 cut(s) 59, 97, 154, 261
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 286
SetI ASST 9 cut(s) 97, 197, 221, 232, 238, 373, 407, 419, 432
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 483
SsiI CCGC 2 cut(s) 26, 298
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 389, 425, 456
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 483
TauI GCSGC 1 cut(s) 29
TseFI GTSAC 2 cut(s) 379, 425
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 2 cut(s) 379, 425
Van91I CCANNNNNTGG 1 cut(s) 19
XapI RAATTY 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.