RLG00000011127

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014675
Physical Location & Seq
Forward (+)
7017320 .. 7019866
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011127

Sequence Viewer

Length: 864 bp
ATGCCTCGCCGGCATGAGGAAGGAGCAGCCGGACGGGCCTCTGGTTCTTTTGCTCTCTGCTATGAAAAGCTTGGCTGTTTGGGTATGGTTTTCTTCCATTCTGGTGGCAGCGCTGCTGATGCCGGGGTGCTTATGTCTGGTGGAGCGTCGGTGATTGACTTGCATGATGGTGGTGGGATACATTGGAGATGGTGGAGGTGGATGATTCTTGGCTTATGGAGGCTGCGCAAAGGTGAAGGTGGTGTTAGGATGTTGATTGACGAGATCTGTGGCAATCTCGACTGGGTTCATAATGCGTGGCGGTGGTTGGTGGCTCTGTGGGCGTGGAGTCTGACAATGGGGCGTTGGCTTGGGTGTGGGATGATGTATGGAGCTTGGTCAATCACCGATGGTTGGTTGGCTATCAGGTGGTTAAATCGATTAGGGCAGCGGCTGTGCAGTGGGTGGGTGGCCGTCATTGGGCGGGTGGAGGTGGCGTCACCGATCATGCACGACGATGTTAACTGTAACAACTGGCGGTGCTCGGGGTGGAACAATCCGGTGCTTTATTTGGCGGCGGCGTTTGCGGCCGTGTTCCTTTTCCTGCGGCTAGGGCTCTCCATATGGATTTTTTACGAGAAGCGGAGGCAGATAATGGCTCAACAACACGATCACAGATTATCATCAGCTTCACAAGACTTGGAGAGTAATGGGACGGTTACTAGTAATAGTACTGATCGTGTTCATCAGAGAGAATGGGAATTGGAGAGTGTTAATGGTGGTGGTGAGGCCAGCGATTGCAAGGAAGGGAAAGTTTCCGACAATAAGGTTTTGGTGATAATGGCTGGAGACGACAAACCTACCTTCTTGGCCACGCCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.11

Weight (kDa)

7.1

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 227
AciI CCGC 9 cut(s) 301, 430, 463, 517, 554, 557, 566, 586, 622
AcoI YGGCCR 3 cut(s) 450, 567, 849
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 1 cut(s) 712
AfeI AGCGCT 1 cut(s) 112
AfiI CCNNNNNNNGG 3 cut(s) 16, 393, 459
AhlI ACTAGT 1 cut(s) 701
AluBI AGCT 3 cut(s) 70, 374, 668
AluI AGCT 3 cut(s) 70, 374, 668
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 822
AlwNI CAGNNNCTG 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 523
Aor51HI AGCGCT 1 cut(s) 112
AoxI GGCC 5 cut(s) 36, 450, 567, 768, 849
ApeKI GCWGC 5 cut(s) 26, 108, 113, 223, 427
AspLEI GCGC 2 cut(s) 113, 228
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 6 cut(s) 163, 245, 376, 471, 776, 826
AvaI CYCGRG 1 cut(s) 523
BalI TGGCCA 1 cut(s) 851
BanII GRGCYC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 5 cut(s) 38, 100, 120, 210, 439
BccI CCATC 3 cut(s) 161, 183, 383
BceAI ACGGC 2 cut(s) 437, 554
BciVI GTATCC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 822
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 2 cut(s) 590, 702
BfoI RGCGCY 1 cut(s) 114
BfuI GTATCC 1 cut(s) 171
BglI GCCNNNNNGGC 2 cut(s) 10, 35
BglII AGATCT 1 cut(s) 264
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 846
BpuMI CCSGG 1 cut(s) 124
Bsa29I ATCGAT 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 661
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 4 cut(s) 135, 165, 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 393, 459
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 287, 518
Bse8I GATNNNNATC 1 cut(s) 661
BseCI ATCGAT 1 cut(s) 418
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 3 cut(s) 207, 255, 366
BseJI GATNNNNATC 1 cut(s) 661
BseLI CCNNNNNNNGG 3 cut(s) 16, 393, 459
BseNI ACTGG 2 cut(s) 287, 518
BseX3I CGGCCG 1 cut(s) 567
BseXI GCAGC 5 cut(s) 38, 100, 120, 210, 439
BsgI GTGCAG 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 570
BshFI GGCC 5 cut(s) 38, 452, 569, 770, 851
BshVI ATCGAT 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 4 cut(s) 10, 30, 123, 539
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 3 cut(s) 16, 393, 459
BsmAI GTCTC 1 cut(s) 822
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 5 cut(s) 38, 452, 569, 770, 851
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 524, 597
Bsp143I GATC 4 cut(s) 264, 483, 649, 715
BspACI CCGC 9 cut(s) 301, 430, 463, 517, 554, 557, 566, 586, 622
BspANI GGCC 5 cut(s) 38, 452, 569, 770, 851
BspDI ATCGAT 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 2 cut(s) 287, 518
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 4 cut(s) 264, 483, 649, 715
BssNI GRCGYC 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 506, 697
BstACI GRCGYC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 11, 772
BstF5I GGATG 3 cut(s) 207, 255, 366
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 2 cut(s) 113, 228
BstKTI GATC 4 cut(s) 267, 486, 652, 718
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 4 cut(s) 264, 483, 649, 715
BstMCI CGRYCG 1 cut(s) 570
BstMWI GCNNNNNNNGC 7 cut(s) 10, 35, 119, 320, 563, 566, 592
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 5 cut(s) 38, 100, 120, 210, 439
BstX2I RGATCY 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 104
BstYI RGATCY 1 cut(s) 264
BstZI CGGCCG 1 cut(s) 567
Bsu15I ATCGAT 1 cut(s) 418
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 5 cut(s) 38, 452, 569, 770, 851
BsuTUI ATCGAT 1 cut(s) 418
BtsCI GGATG 3 cut(s) 207, 255, 366
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 11, 772
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 2 cut(s) 113, 228
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 418
CseI GACGC 2 cut(s) 135, 465
Csp6I GTAC 1 cut(s) 711
CviAII CATG 3 cut(s) 14, 164, 487
CviQI GTAC 1 cut(s) 711
DpnI GATC 4 cut(s) 266, 485, 651, 717
DpnII GATC 4 cut(s) 264, 483, 649, 715
EaeI YGGCCR 3 cut(s) 450, 567, 849
EagI CGGCCG 1 cut(s) 567
EclXI CGGCCG 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 597
Eco47III AGCGCT 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 822
FaeI CATG 3 cut(s) 17, 167, 490
FaqI GGGAC 1 cut(s) 706
FatI CATG 3 cut(s) 13, 163, 486
FauI CCCGC 1 cut(s) 456
FauNDI CATATG 1 cut(s) 602
FokI GGATG 3 cut(s) 214, 262, 373
FriOI GRGCYC 1 cut(s) 597
FspBI CTAG 2 cut(s) 590, 702
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 2 cut(s) 112, 227
GsuI CTGGAG 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 5 cut(s) 38, 452, 569, 770, 851
HapII CCGG 4 cut(s) 10, 30, 123, 539
HgaI GACGC 2 cut(s) 135, 465
HhaI GCGC 2 cut(s) 113, 228
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 3 cut(s) 17, 167, 490
Hin6I GCGC 2 cut(s) 111, 226
HinP1I GCGC 2 cut(s) 111, 226
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 205, 328
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 4 cut(s) 10, 30, 123, 539
HphI GGTGA 6 cut(s) 163, 245, 376, 471, 776, 826
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 3 cut(s) 333, 729, 799
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 502
Hpy99I CGWCG 2 cut(s) 151, 497
HpyAV CCTTC 4 cut(s) 14, 230, 779, 853
HpyCH4III ACNGT 2 cut(s) 506, 697
HpyCH4V TGCA 4 cut(s) 163, 438, 490, 780
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 35, 119, 320, 563, 566, 592
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 3 cut(s) 17, 167, 490
HspAI GCGC 2 cut(s) 111, 226
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 264, 483, 649, 715
LmnI GCTCC 3 cut(s) 23, 143, 371
Lsp1109I GCAGC 5 cut(s) 38, 100, 120, 210, 439
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 590, 702
MaeIII GTNAC 3 cut(s) 477, 506, 697
MalI GATC 4 cut(s) 266, 485, 651, 717
MboI GATC 4 cut(s) 264, 483, 649, 715
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 2 cut(s) 524, 597
MlsI TGGCCA 1 cut(s) 851
MluCI AATT 1 cut(s) 740
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 822
MnlI CCTC 8 cut(s) 10, 15, 49, 189, 213, 463, 618, 760
Mox20I TGGCCA 1 cut(s) 851
MroNI GCCGGC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 851
MseI TTAA 3 cut(s) 413, 501, 753
MslI CAYNNNNRTG 4 cut(s) 102, 168, 495, 857
Msp20I TGGCCA 1 cut(s) 851
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 4 cut(s) 10, 30, 123, 539
MspR9I CCNGG 1 cut(s) 124
MwoI GCNNNNNNNGC 7 cut(s) 10, 35, 119, 320, 563, 566, 592
NaeI GCCGGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 124
NdeI CATATG 1 cut(s) 602
NdeII GATC 4 cut(s) 264, 483, 649, 715
NgoMIV GCCGGC 1 cut(s) 9
NlaIII CATG 3 cut(s) 17, 167, 490
NmuCI GTSAC 1 cut(s) 477
NsbI TGCGCA 1 cut(s) 227
PdiI GCCGGC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 205
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 1 cut(s) 712
RsaNI GTAC 1 cut(s) 711
RseI CAYNNNNRTG 4 cut(s) 102, 168, 495, 857
SaqAI TTAA 3 cut(s) 413, 501, 753
Sau3AI GATC 4 cut(s) 264, 483, 649, 715
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 524, 597
SfaNI GCATC 1 cut(s) 109
SmiMI CAYNNNNRTG 4 cut(s) 102, 168, 495, 857
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 1 cut(s) 740
SsiI CCGC 9 cut(s) 301, 430, 463, 517, 554, 557, 566, 586, 622
SspMI CTAG 2 cut(s) 590, 702
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 506, 697
TaqI TCGA 2 cut(s) 279, 418
TasI AATT 1 cut(s) 740
TatI WGTACW 1 cut(s) 710
TauI GCSGC 5 cut(s) 433, 557, 560, 569, 589
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 3 cut(s) 413, 501, 753
Tru9I TTAA 3 cut(s) 413, 501, 753
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 477
TseI GCWGC 5 cut(s) 26, 108, 113, 223, 427
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 3 cut(s) 78, 278, 713
TspRI CASTG 1 cut(s) 445
XspI CTAG 2 cut(s) 590, 702
ZrmI AGTACT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.