RLG00000021003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014675
Physical Location & Seq
Forward (+)
70987678 .. 70989064
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021003

Sequence Viewer

Length: 522 bp
ATGGTTTTCTTCCATTTTCTGGTGGCGGCGCTGCTGGTCTTGCGAGCCGGTCCATGCAGATCTGGTGTGGGCTGGGGGATGGCTTCGGGGCGATGTGATCTGGTTGGGGCTGTCCTTTGTTGCCGTGGTGGTTCTGTCTGGTGGAGCGTCGATGATCGACATGATGGTGGTGGGATACATTGGAGATGGTGGAGGTGGATGACTCTTGGCTTATGGAGGCTGCGCAGAGGTGAAGGTGGTGTTAGGATTTTGATTGACGAGATCTGTGGCAATCTCGTCTGGGCTCATGATGCGTGGCGGTGGTTGGTGGCTCTGTGGGCGTGGAGTCTGAAACTGGGGCGTTGGCTTGGGTTTGGGATGATGTATGGAGCTTGGTCAGTCACCGACGGTGGGTTGGATATCAGGTGGTTAAATCGATTAGGGTGGTGGCTATGCAGTGGGTGGGGGGCTGTTACTGGGCGGGTGGAGGTGGCGGTGCCTGAGCAGTTGGTCAATCATGACTTACAGAAATTATGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.75

Weight (kDa)

9.17

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 475
AccB7I CCANNNNNTGG 1 cut(s) 19
AciI CCGC 4 cut(s) 26, 298, 460, 473
AcoI YGGCCR 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 19, 390
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 2 cut(s) 31, 220
AspLEI GCGC 2 cut(s) 31, 225
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 242, 373
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 517
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 18, 207
BccI CCATC 3 cut(s) 73, 158, 180
BceAI ACGGC 1 cut(s) 108
BciVI GTATCC 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 2 cut(s) 59, 261
BisI GCNGC 3 cut(s) 27, 32, 221
BlsI GCNGC 3 cut(s) 28, 33, 222
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 477
BmrI ACTGGG 2 cut(s) 344, 465
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 2 cut(s) 344, 465
Bpu10I CCTNAGC 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 390
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 339, 460
BseCI ATCGAT 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 3 cut(s) 84, 204, 363
BseLI CCNNNNNNNGG 2 cut(s) 19, 390
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 339, 460
BseXI GCAGC 2 cut(s) 18, 207
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 517
BshNI GGYRCC 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 415
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 19, 390
BsnI GGCC 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 59, 97, 154, 261
BspACI CCGC 4 cut(s) 26, 298, 460, 473
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 1 cut(s) 415
BspHI TCATGA 2 cut(s) 286, 496
BspLI GGNNCC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 2 cut(s) 339, 460
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 4 cut(s) 59, 97, 154, 261
Bst4CI ACNGT 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 84, 204, 363
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 31, 225
BstKTI GATC 4 cut(s) 62, 100, 157, 264
BstMBI GATC 4 cut(s) 59, 97, 154, 261
BstMWI GCNNNNNNNGC 3 cut(s) 40, 290, 317
BstV1I GCAGC 2 cut(s) 18, 207
BstX2I RGATCY 2 cut(s) 59, 261
BstYI RGATCY 2 cut(s) 59, 261
Bsu15I ATCGAT 1 cut(s) 415
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 517
BsuTUI ATCGAT 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 3 cut(s) 84, 204, 363
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 45
CciI TCATGA 2 cut(s) 286, 496
CfoI GCGC 2 cut(s) 31, 225
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 415
CseI GACGC 1 cut(s) 136
CviAII CATG 4 cut(s) 54, 161, 287, 497
DdeI CTNAG 1 cut(s) 480
DpnI GATC 4 cut(s) 61, 99, 156, 263
DpnII GATC 4 cut(s) 59, 97, 154, 261
EaeI YGGCCR 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 50
EcoRV GATATC 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 4 cut(s) 57, 164, 290, 500
FaiI YATR 9 cut(s) 55, 162, 214, 288, 366, 433, 498, 514, 520
FatI CATG 4 cut(s) 53, 160, 286, 496
FauI CCCGC 1 cut(s) 453
Fnu4HI GCNGC 3 cut(s) 27, 32, 221
FokI GGATG 3 cut(s) 91, 211, 370
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 27, 32, 221
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 2 cut(s) 30, 224
GluI GCNGC 3 cut(s) 27, 32, 221
GsaI CCCAGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 517
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 136
HhaI GCGC 2 cut(s) 31, 225
Hin1II CATG 4 cut(s) 57, 164, 290, 500
Hin6I GCGC 2 cut(s) 29, 223
HinP1I GCGC 2 cut(s) 29, 223
HinfI GANTC 2 cut(s) 202, 325
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 242, 373
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 2 cut(s) 287, 497
Hpy99I CGWCG 2 cut(s) 152, 389
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 57, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 290, 317
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 4 cut(s) 57, 164, 290, 500
HspAI GCGC 2 cut(s) 29, 223
Kzo9I GATC 4 cut(s) 59, 97, 154, 261
LmnI GCTCC 2 cut(s) 144, 368
Lsp1109I GCAGC 2 cut(s) 18, 207
LweI GCATC 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 379, 451
MalI GATC 4 cut(s) 61, 99, 156, 263
MboI GATC 4 cut(s) 59, 97, 154, 261
MflI RGATCY 2 cut(s) 59, 261
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 1 cut(s) 509
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 2 cut(s) 196, 334
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 4 cut(s) 186, 210, 221, 460
Mox20I TGGCCA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 517
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 517
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 40, 290, 317
NdeII GATC 4 cut(s) 59, 97, 154, 261
NlaIII CATG 4 cut(s) 57, 164, 290, 500
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 379
NsbI TGCGCA 1 cut(s) 224
PagI TCATGA 2 cut(s) 286, 496
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 3 cut(s) 28, 33, 222
PleI GAGTC 2 cut(s) 196, 333
PpsI GAGTC 2 cut(s) 196, 333
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 2 cut(s) 59, 261
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 3 cut(s) 27, 32, 221
Sau3AI GATC 4 cut(s) 59, 97, 154, 261
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 196, 334
SduI GDGCHC 1 cut(s) 286
SetI ASST 6 cut(s) 197, 232, 238, 373, 407, 471
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 509
SsiI CCGC 4 cut(s) 26, 298, 460, 473
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 3 cut(s) 150, 157, 415
TasI AATT 1 cut(s) 509
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 31, 220
Tsp45I GTSAC 1 cut(s) 379
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.