Rh4AG143500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014675
Physical Location & Seq
Forward (+)
36322026 .. 36322325
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG143500.1

Sequence Viewer

Length: 300 bp
ATGGTTTTCTTCCATTCTCTGGTGGCGGCGCTGCTGGTATTGCGAGCCGGCTCGCGCAGATCTGGTGTGGGCTGGGGGATGGCTTCGAGGCGACGGAATCTGGTTGGGGCTGTCTTTCGTTGTTGTGGTGGTTCTGTCTGGTGGAGCGTCGGTGATCGACATGATGGTGGTGGGATACATTGGAGATGGTGGAGGTGGATGACTCTTGGCTTATGGAGGCTGCGCAGAGGTGAAGGTGATGTTAGGATATTGATTGACGAGATCTGTCGCTATCTTGTCTGGGTTCATGATGTGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.58

Weight (kDa)

11.41

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 19
AccII CGCG 1 cut(s) 55
AciI CCGC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 31, 220
AspLEI GCGC 3 cut(s) 31, 57, 225
AsuHPI GGTGA 3 cut(s) 164, 242, 248
BbvI GCAGC 2 cut(s) 18, 207
BccI CCATC 3 cut(s) 73, 158, 180
BciVI GTATCC 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 2 cut(s) 59, 261
BisI GCNGC 3 cut(s) 27, 32, 221
BlsI GCNGC 3 cut(s) 28, 33, 222
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 47
BseGI GGATG 2 cut(s) 84, 204
BseLI CCNNNNNNNGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 18, 207
BseYI CCCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 55
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 19
Bsp143I GATC 3 cut(s) 59, 154, 261
BspACI CCGC 1 cut(s) 26
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 3 cut(s) 59, 154, 261
BstC8I GCNNGC 3 cut(s) 45, 49, 53
BstF5I GGATG 2 cut(s) 84, 204
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 31, 57, 225
BstKTI GATC 3 cut(s) 62, 157, 264
BstMBI GATC 3 cut(s) 59, 154, 261
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 18, 207
BstX2I RGATCY 2 cut(s) 59, 261
BstYI RGATCY 2 cut(s) 59, 261
BsuI GTATCC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 84, 204
Cac8I GCNNGC 3 cut(s) 45, 49, 53
CciI TCATGA 1 cut(s) 286
CfoI GCGC 3 cut(s) 31, 57, 225
Cfr10I RCCGGY 1 cut(s) 47
CseI GACGC 1 cut(s) 136
CviAII CATG 2 cut(s) 161, 287
CviJI RGCY 7 cut(s) 47, 51, 72, 83, 110, 210, 220
CviKI_1 RGCY 7 cut(s) 47, 51, 72, 83, 110, 210, 220
DpnI GATC 3 cut(s) 61, 156, 263
DpnII GATC 3 cut(s) 59, 154, 261
FaeI CATG 2 cut(s) 164, 290
FaiI YATR 3 cut(s) 162, 214, 288
FatI CATG 2 cut(s) 160, 286
Fnu4HI GCNGC 3 cut(s) 27, 32, 221
FokI GGATG 2 cut(s) 91, 211
Fsp4HI GCNGC 3 cut(s) 27, 32, 221
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 3 cut(s) 30, 56, 224
GluI GCNGC 3 cut(s) 27, 32, 221
GsaI CCCAGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 32
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 136
HhaI GCGC 3 cut(s) 31, 57, 225
Hin1II CATG 2 cut(s) 164, 290
Hin6I GCGC 3 cut(s) 29, 55, 223
HinP1I GCGC 3 cut(s) 29, 55, 223
HinfI GANTC 2 cut(s) 97, 202
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 164, 242, 248
Hpy188III TCNNGA 1 cut(s) 287
Hpy99I CGWCG 2 cut(s) 96, 152
HpyAV CCTTC 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 164, 290
HspAI GCGC 3 cut(s) 29, 55, 223
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 59, 154, 261
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 5, 20, 48, 58, 61, 86, 124, 265
Lsp1109I GCAGC 2 cut(s) 18, 207
MalI GATC 3 cut(s) 61, 156, 263
MboI GATC 3 cut(s) 59, 154, 261
MflI RGATCY 2 cut(s) 59, 261
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 4 cut(s) 81, 186, 210, 221
MroNI GCCGGC 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 40
NaeI GCCGGC 1 cut(s) 49
NdeII GATC 3 cut(s) 59, 154, 261
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 164, 290
NsbI TGCGCA 1 cut(s) 224
PagI TCATGA 1 cut(s) 286
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 3 cut(s) 28, 33, 222
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 72
PsuI RGATCY 2 cut(s) 59, 261
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 3 cut(s) 27, 32, 221
Sau3AI GATC 3 cut(s) 59, 154, 261
SchI GAGTC 1 cut(s) 196
SetI ASST 3 cut(s) 197, 232, 238
SmiMI CAYNNNNRTG 1 cut(s) 165
SsiI CCGC 1 cut(s) 26
TaqI TCGA 2 cut(s) 86, 157
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 97
TseI GCWGC 2 cut(s) 31, 220
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.