Rroxscaffold_7G00165190

Protein GLUTAMINE DUMPER

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
7050722 .. 7051099
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165190.1

Sequence Viewer

Length: 378 bp
ATGCACGACGGTGATAACTGTAACAACTGGCGGTGCTCGGCGTCGAACAATCCGGTGCTTTATTTGGCGGCGGCGTTTGTGGCCGTGTTCCTTTTCCTGCGGCTAGGGCTCTCCATCTGGATTCTTTACGAGAAGCGGAGGCAGATAATGGCTCAACAACACGATCACAGATTATCATCAGCTTCACAAGACTTGGAGAGTAATGGGACGGTTACTAGTAATAGTACTGATCGTGTTCGTCAGAGAGAATGGGAATTGGAGAGTGTTAATGGTGGTGGTGAGGCCAGCGATTGCAAGGAAGGGAAAGTTTCCGACGATAAGGTTTTGGTGATAATGGCCGGAGATGACAAACCTACCTTCTTGGCCACGCCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.95

Weight (kDa)

5.27

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 31, 68, 71, 100, 136
AcoI YGGCCR 3 cut(s) 81, 336, 363
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw21I GWGCWC 1 cut(s) 38
AoxI GGCC 4 cut(s) 81, 282, 336, 363
AsuHPI GGTGA 3 cut(s) 23, 290, 340
BalI TGGCCA 1 cut(s) 365
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 104, 216
BisI GCNGC 3 cut(s) 69, 72, 101
BlsI GCNGC 3 cut(s) 70, 73, 102
BmcAI AGTACT 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 175
BseNI ACTGG 1 cut(s) 32
BshFI GGCC 4 cut(s) 83, 284, 338, 365
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 53, 339
BslFI GGGAC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 4 cut(s) 83, 284, 338, 365
Bsp1286I GDGCHC 2 cut(s) 38, 111
Bsp143I GATC 2 cut(s) 163, 229
BspACI CCGC 5 cut(s) 31, 68, 71, 100, 136
BspANI GGCC 4 cut(s) 83, 284, 338, 365
BsrI ACTGG 1 cut(s) 32
BssMI GATC 2 cut(s) 163, 229
BssNI GRCGYC 1 cut(s) 41
Bst4CI ACNGT 3 cut(s) 11, 20, 211
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 166, 232
BstMBI GATC 2 cut(s) 163, 229
BstMWI GCNNNNNNNGC 2 cut(s) 80, 106
BsuRI GGCC 4 cut(s) 83, 284, 338, 365
Cac8I GCNNGC 1 cut(s) 286
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 8 cut(s) 83, 103, 109, 152, 182, 284, 338, 365
CviKI_1 RGCY 8 cut(s) 83, 103, 109, 152, 182, 284, 338, 365
CviQI GTAC 1 cut(s) 225
DpnI GATC 2 cut(s) 165, 231
DpnII GATC 2 cut(s) 163, 229
EaeI YGGCCR 3 cut(s) 81, 336, 363
Eco24I GRGCYC 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 111
FaqI GGGAC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 69, 72, 101
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 69, 72, 101
FspBI CTAG 2 cut(s) 104, 216
GluI GCNGC 3 cut(s) 69, 72, 101
HaeIII GGCC 4 cut(s) 83, 284, 338, 365
HapII CCGG 2 cut(s) 53, 339
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 41
HinfI GANTC 1 cut(s) 121
HpaII CCGG 2 cut(s) 53, 339
HphI GGTGA 3 cut(s) 23, 290, 340
Hpy188I TCNGA 2 cut(s) 243, 313
Hpy188III TCNNGA 1 cut(s) 118
Hpy99I CGWCG 3 cut(s) 11, 46, 317
HpyAV CCTTC 2 cut(s) 293, 367
HpyCH4III ACNGT 3 cut(s) 11, 20, 211
HpyCH4V TGCA 2 cut(s) 4, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 106
Hsp92I GRCGYC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 163, 229
LpnPI CCDG 6 cut(s) 13, 66, 103, 110, 298, 352
MaeI CTAG 2 cut(s) 104, 216
MaeIII GTNAC 2 cut(s) 20, 211
MalI GATC 2 cut(s) 165, 231
MboI GATC 2 cut(s) 163, 229
MhlI GDGCHC 2 cut(s) 38, 111
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 2 cut(s) 132, 274
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 2 cut(s) 9, 371
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 53, 339
MwoI GCNNNNNNNGC 2 cut(s) 80, 106
NdeII GATC 2 cut(s) 163, 229
NmeAIII GCCGAG 1 cut(s) 17
OliI CACNNNNGTG 1 cut(s) 9
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 70, 73, 102
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 9, 371
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 69, 72, 101
Sau3AI GATC 2 cut(s) 163, 229
ScaI AGTACT 1 cut(s) 226
SduI GDGCHC 2 cut(s) 38, 111
SetI ASST 4 cut(s) 184, 324, 355, 359
SmiMI CAYNNNNRTG 2 cut(s) 9, 371
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 1 cut(s) 254
SsiI CCGC 5 cut(s) 31, 68, 71, 100, 136
SspMI CTAG 2 cut(s) 104, 216
TaaI ACNGT 3 cut(s) 11, 20, 211
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 254
TatI WGTACW 1 cut(s) 224
TauI GCSGC 3 cut(s) 71, 74, 103
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
XspI CTAG 2 cut(s) 104, 216
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.