Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014675

Physical Location & Seq

Genomic Coordinates Reverse (-)

43034782 .. 43035346

Gene Structure 565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCTCGCCGGCATGAGGTAGGAGCAGCTGGACAGGCCTCTGGTTCTTTTGTTCTCTGCTATGAAAAGCTTGGCTTTTTTGGTATGGTTTTCTTCTATTCTCTAGTGGCGGCGCTGCTGGTATTGATAGCCGGCCCGCGCAGATCTGGTATGGGCTGGGTGATTGTCCGTAGCGTCGGTGATCGACATGATGGTGGTGGGATACATTGGAGATGGTGGAGGTGGATGACTCTTGGCTTATGGAGGCTGCGCAGAGGTGAAGGTGGTGTTAGGATGTTGATTGACGAGATCTGTGGCAGTCTCGACTGGGTTCATGATGCGCGGCGGTGGTTGGAGGCTCTGTGGGCTTGGAGTCTGAAACTGGGGCGATGGCTTGGGTTTGGGATGATGTATGGAGCTTGGTCAATCACCGACGGTTGGTTGAATATCAGGTGGTTAAGTCGATTAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.3

Weight (kDa)

10.72

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38421
rosa_chinensis	RchiOBHm_Chr1g0332831
rosa_laevigata	RLG00000011127 RLG00000021003 RLG00000025216 RLG00000031581
rosa_multiflora	Rmu_sc0000429.1_g000029
rosa_roxburghii	Rroxscaffold_7G00165190
rosa_rugosa	Rorug05G0463100 Rorug06G0317900
rosa_samantha	Rh2AG115500 Rh4AG143500 Rh6AG431400 Rh6BG471200 Rh6CG443800 Rh6DG430500
rosa_wichuraiana	Rw6G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	251
AccII	CGCG	2 cut(s)	139, 322
AciI	CCGC	4 cut(s)	110, 137, 322, 325
AfiI	CCNNNNNNNGG	2 cut(s)	16, 417
AgsI	TTSAA	1 cut(s)	424
AluBI	AGCT	3 cut(s)	29, 70, 398
AluI	AGCT	3 cut(s)	29, 70, 398
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	36, 133
ApeKI	GCWGC	3 cut(s)	26, 115, 247
AspLEI	GCGC	4 cut(s)	115, 141, 252, 322
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	172, 191, 269, 400
BbvI	GCAGC	3 cut(s)	38, 102, 234
BccI	CCATC	3 cut(s)	185, 207, 363
BciVI	GTATCC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	2 cut(s)	143, 288
BisI	GCNGC	5 cut(s)	27, 111, 116, 248, 323
BlsI	GCNGC	5 cut(s)	28, 112, 117, 249, 324
BmgT120I	GGNCC	1 cut(s)	134
BmrI	ACTGGG	2 cut(s)	316, 371
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	2 cut(s)	316, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 417
Bse118I	RCCGGY	2 cut(s)	9, 131
Bse1I	ACTGG	2 cut(s)	311, 366
BseGI	GGATG	3 cut(s)	231, 279, 390
BseLI	CCNNNNNNNGG	2 cut(s)	16, 417
BseNI	ACTGG	2 cut(s)	311, 366
BseXI	GCAGC	3 cut(s)	38, 102, 234
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	139, 322
BshFI	GGCC	2 cut(s)	38, 135
BsiSI	CCGG	2 cut(s)	10, 132
BslI	CCNNNNNNNGG	2 cut(s)	16, 417
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	38, 135
Bsp143I	GATC	3 cut(s)	143, 181, 288
BspACI	CCGC	4 cut(s)	110, 137, 322, 325
BspANI	GGCC	2 cut(s)	38, 135
BspFNI	CGCG	2 cut(s)	139, 322
BspHI	TCATGA	1 cut(s)	313
BsrFI	RCCGGY	2 cut(s)	9, 131
BsrI	ACTGG	2 cut(s)	311, 366
BssAI	RCCGGY	2 cut(s)	9, 131
BssMI	GATC	3 cut(s)	143, 181, 288
Bst4CI	ACNGT	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	11, 133, 137
BstF5I	GGATG	3 cut(s)	231, 279, 390
BstFNI	CGCG	2 cut(s)	139, 322
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	4 cut(s)	115, 141, 252, 322
BstKTI	GATC	3 cut(s)	146, 184, 291
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	3 cut(s)	143, 181, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 35, 344
BstUI	CGCG	2 cut(s)	139, 322
BstV1I	GCAGC	3 cut(s)	38, 102, 234
BstX2I	RGATCY	2 cut(s)	143, 288
BstYI	RGATCY	2 cut(s)	143, 288
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	38, 135
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	3 cut(s)	231, 279, 390
Cac8I	GCNNGC	3 cut(s)	11, 133, 137
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	4 cut(s)	115, 141, 252, 322
Cfr10I	RCCGGY	2 cut(s)	9, 131
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	163
CviAII	CATG	3 cut(s)	14, 188, 314
DpnI	GATC	3 cut(s)	145, 183, 290
DpnII	GATC	3 cut(s)	143, 181, 288
Eco147I	AGGCCT	1 cut(s)	38
FaeI	CATG	3 cut(s)	17, 191, 317
FaiI	YATR	8 cut(s)	15, 63, 86, 152, 189, 241, 315, 393
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	3 cut(s)	13, 187, 313
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	27, 111, 116, 248, 323
FokI	GGATG	3 cut(s)	238, 286, 397
Fsp4HI	GCNGC	5 cut(s)	27, 111, 116, 248, 323
FspBI	CTAG	1 cut(s)	104
FspI	TGCGCA	1 cut(s)	251
GlaI	GCGC	4 cut(s)	114, 140, 251, 321
GluI	GCNGC	5 cut(s)	27, 111, 116, 248, 323
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	38, 135
HapII	CCGG	2 cut(s)	10, 132
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	4 cut(s)	115, 141, 252, 322
Hin1II	CATG	3 cut(s)	17, 191, 317
Hin6I	GCGC	4 cut(s)	113, 139, 250, 320
HinP1I	GCGC	4 cut(s)	113, 139, 250, 320
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	229, 352
HpaII	CCGG	2 cut(s)	10, 132
HphI	GGTGA	4 cut(s)	172, 191, 269, 400
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	2 cut(s)	302, 314
Hpy99I	CGWCG	2 cut(s)	179, 416
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 35, 344
Hsp92II	CATG	3 cut(s)	17, 191, 317
HspAI	GCGC	4 cut(s)	113, 139, 250, 320
KroI	GCCGGC	2 cut(s)	9, 131
KroNI	GCCGGC	2 cut(s)	11, 133
Kzo9I	GATC	3 cut(s)	143, 181, 288
LmnI	GCTCC	2 cut(s)	23, 395
Lsp1109I	GCAGC	3 cut(s)	38, 102, 234
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	104
MalI	GATC	3 cut(s)	145, 183, 290
MboI	GATC	3 cut(s)	143, 181, 288
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	2 cut(s)	143, 288
MlyI	GAGTC	2 cut(s)	223, 361
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	10, 15, 49, 213, 237, 248, 328
MroNI	GCCGGC	2 cut(s)	9, 131
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	2 cut(s)	10, 132
MvnI	CGCG	2 cut(s)	139, 322
MwoI	GCNNNNNNNGC	3 cut(s)	10, 35, 344
NaeI	GCCGGC	2 cut(s)	11, 133
NdeII	GATC	3 cut(s)	143, 181, 288
NgoMIV	GCCGGC	2 cut(s)	9, 131
NlaIII	CATG	3 cut(s)	17, 191, 317
NsbI	TGCGCA	1 cut(s)	251
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	38
PdiI	GCCGGC	2 cut(s)	11, 133
PkrI	GCNGC	5 cut(s)	28, 112, 117, 249, 324
PleI	GAGTC	2 cut(s)	223, 360
PpsI	GAGTC	2 cut(s)	223, 360
PspFI	CCCAGC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	143, 288
PvuII	CAGCTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	5 cut(s)	27, 111, 116, 248, 323
Sau3AI	GATC	3 cut(s)	143, 181, 288
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	223, 361
SetI	ASST	8 cut(s)	21, 31, 72, 224, 259, 265, 400, 434
SfaNI	GCATC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	4 cut(s)	110, 137, 322, 325
SspMI	CTAG	1 cut(s)	104
StuI	AGGCCT	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	184, 303, 442
TauI	GCSGC	2 cut(s)	113, 325
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseI	GCWGC	3 cut(s)	26, 115, 247
TspDTI	ATGAA	2 cut(s)	78, 302
TspGWI	ACGGA	1 cut(s)	158
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.