RchiOBHm_Chr1g0332831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014675
Physical Location & Seq
Reverse (-)
24613290 .. 24615983
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56171

Sequence Viewer

Length: 867 bp
ATGACATATAACAAAAATGAAATTAAATCCTTGCTGCTATATACATGTTTTTTTGTTTTACAATATAACATATTGGGGTTGGGGTTTTCAAAACGTTTTCTATTGCTTGTCCAGCGGCCCTTCTGTGCCAGCGACGGCGCCATGCCTCGCCGACATGAGGTAGGAGCAGCCGGACGGGCCTCTGGTTCTTTTGCTCTCTGCTATGAAAAGCTTGGCTGTTTGGGTATGGTTTTCTTCCATTCTCTGGTGGCGGCGCTGCTGGTATTGATAGTCGGCCCGCGTAGATCTGGTGTGGGCTGGGGGATGGCTTCGAGCAGACGTGATCTGGTTGGGTCTGTCCTTAGTTGCCATGGTGGTTATGTCTGGTGGAGCGTCTGTGATCGACATGATGGTGGTGGGATACATTGGAGATGGTGGAGGTGGATGACTCTTGGCTTATGGAGGCTGCACAGAGGTGAAGGTGGTGTTAGGGTGTTGATTGACGAAATTTGTGGCAATCTCGACTGGGTTCATGATGCGTGGGCGTGGAGTCTAAAACTAGGGCGTTGGTTTGGGTTTGGGATGATGTATGGAGCTTGGTCAATCACCGACGGTTGGTTGGATATCAGGTGGTTAAATCGATTAGGGCAGTGGCTGTGCAGTGGGTGGGTGGCCGTCATTGGGCGGGTGGAGGTGGTGGTGCCTGAGTGGTTGGGTTTGGAGGTTTTGGTCGTGTTGTGGAGCGATCTATATGGTGTTTCTCCTGGGAACAATATGTTACAATTTCGATGCTGTTTGGTTATCAACAGAAAGGTGGATTTCCTTTGCACGTGGTCTGGCGGTTTATGGACACGGTGTGGAAGAGGGTGGAGTGCTAGAATTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.7

Weight (kDa)

9.28

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 137, 679
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 1 cut(s) 280
AciI CCGC 5 cut(s) 115, 251, 278, 664, 819
AclI AACGTT 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 486
AcvI CACGTG 1 cut(s) 810
AcyI GRCGYC 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 836
AfiI CCNNNNNNNGG 4 cut(s) 157, 244, 594, 660
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 90
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 742
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 2 cut(s) 211, 575
AluI AGCT 2 cut(s) 211, 575
AlwNI CAGNNNCTG 1 cut(s) 634
AoxI GGCC 4 cut(s) 116, 177, 274, 651
ApeKI GCWGC 4 cut(s) 34, 167, 256, 445
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 2 cut(s) 140, 256
AspS9I GGNCC 3 cut(s) 117, 177, 275
AsuHPI GGTGA 2 cut(s) 467, 577
BanI GGYRCC 2 cut(s) 137, 679
BbrPI CACGTG 1 cut(s) 810
BbvI GCAGC 4 cut(s) 21, 179, 243, 432
BccI CCATC 3 cut(s) 298, 383, 405
BceAI ACGGC 2 cut(s) 151, 638
BciT130I CCWGG 1 cut(s) 744
BciVI GTATCC 1 cut(s) 393
BfaI CTAG 2 cut(s) 539, 855
BfoI RGCGCY 2 cut(s) 141, 257
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 1 cut(s) 176
BglII AGATCT 1 cut(s) 284
BisI GCNGC 6 cut(s) 35, 116, 168, 252, 257, 446
BlsI GCNGC 6 cut(s) 36, 117, 169, 253, 258, 447
Bme1390I CCNGG 1 cut(s) 744
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 3 cut(s) 117, 177, 275
BmiI GGNNCC 2 cut(s) 139, 681
BmrFI CCNGG 1 cut(s) 744
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 2 cut(s) 505, 758
BmuI ACTGGG 1 cut(s) 514
Bsa29I ATCGAT 1 cut(s) 619
BsaAI YACGTR 1 cut(s) 810
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 349, 743
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 244, 594, 660
Bse1I ACTGG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 744
BseCI ATCGAT 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 349, 743
BseGI GGATG 3 cut(s) 309, 429, 567
BseLI CCNNNNNNNGG 4 cut(s) 157, 244, 594, 660
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 509
BseXI GCAGC 4 cut(s) 21, 179, 243, 432
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 2 cut(s) 431, 658
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 118, 179, 276, 653
BshNI GGYRCC 2 cut(s) 137, 679
BshVI ATCGAT 1 cut(s) 619
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 4 cut(s) 157, 244, 594, 660
BsnI GGCC 4 cut(s) 118, 179, 276, 653
Bsp143I GATC 4 cut(s) 284, 322, 379, 724
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 5 cut(s) 115, 251, 278, 664, 819
BspANI GGCC 4 cut(s) 118, 179, 276, 653
BspCNI CTCAG 1 cut(s) 676
BspDI ATCGAT 1 cut(s) 619
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 139, 681
BspT107I GGYRCC 2 cut(s) 137, 679
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 349, 743
BssMI GATC 4 cut(s) 284, 322, 379, 724
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 2 cut(s) 593, 834
Bst6I CTCTTC 1 cut(s) 835
BstACI GRCGYC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 810
BstC8I GCNNGC 2 cut(s) 130, 278
BstDEI CTNAG 2 cut(s) 341, 684
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 3 cut(s) 309, 429, 567
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 2 cut(s) 141, 257
BstHHI GCGC 2 cut(s) 140, 256
BstKTI GATC 4 cut(s) 287, 325, 382, 727
BstMBI GATC 4 cut(s) 284, 322, 379, 724
BstMWI GCNNNNNNNGC 2 cut(s) 112, 176
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 742
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 4 cut(s) 21, 179, 243, 432
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 619
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 4 cut(s) 118, 179, 276, 653
BsuTUI ATCGAT 1 cut(s) 619
BtgI CCRYGG 1 cut(s) 349
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 3 cut(s) 309, 429, 567
BtsI GCAGTG 2 cut(s) 635, 646
BtsIMutI CAGTG 2 cut(s) 635, 646
Cac8I GCNNGC 2 cut(s) 130, 278
CaiI CAGNNNCTG 1 cut(s) 634
CciI TCATGA 1 cut(s) 511
CfoI GCGC 2 cut(s) 140, 256
Cfr13I GGNCC 3 cut(s) 117, 177, 275
ClaI ATCGAT 1 cut(s) 619
CseI GACGC 1 cut(s) 361
CviAII CATG 6 cut(s) 45, 142, 155, 350, 386, 512
DdeI CTNAG 2 cut(s) 341, 684
DinI GGCGCC 1 cut(s) 139
DpnI GATC 4 cut(s) 286, 324, 381, 726
DpnII GATC 4 cut(s) 284, 322, 379, 724
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 349
Eco32I GATATC 1 cut(s) 604
Eco72I CACGTG 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 742
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 349
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 6 cut(s) 48, 145, 158, 353, 389, 515
FatI CATG 6 cut(s) 44, 141, 154, 349, 385, 511
FauI CCCGC 2 cut(s) 285, 657
Fnu4HI GCNGC 6 cut(s) 35, 116, 168, 252, 257, 446
FokI GGATG 3 cut(s) 316, 436, 574
Fsp4HI GCNGC 6 cut(s) 35, 116, 168, 252, 257, 446
FspBI CTAG 2 cut(s) 539, 855
GlaI GCGC 2 cut(s) 139, 255
GluI GCNGC 6 cut(s) 35, 116, 168, 252, 257, 446
GsaI CCCAGC 1 cut(s) 301
HaeII RGCGCY 2 cut(s) 141, 257
HaeIII GGCC 4 cut(s) 118, 179, 276, 653
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 361
HhaI GCGC 2 cut(s) 140, 256
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 6 cut(s) 48, 145, 158, 353, 389, 515
Hin6I GCGC 2 cut(s) 138, 254
HinP1I GCGC 2 cut(s) 138, 254
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 427, 529
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 467, 577
Hpy188III TCNNGA 2 cut(s) 500, 512
Hpy99I CGWCG 2 cut(s) 137, 593
HpyAV CCTTC 2 cut(s) 130, 452
HpyCH4III ACNGT 2 cut(s) 593, 834
HpyCH4IV ACGT 3 cut(s) 94, 319, 809
HpyCH4V TGCA 3 cut(s) 448, 639, 807
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 176
HpyF3I CTNAG 2 cut(s) 341, 684
HpySE526I ACGT 3 cut(s) 94, 319, 809
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 6 cut(s) 48, 145, 158, 353, 389, 515
HspAI GCGC 2 cut(s) 138, 254
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 4 cut(s) 284, 322, 379, 724
LmnI GCTCC 4 cut(s) 164, 369, 572, 720
Lsp1109I GCAGC 4 cut(s) 21, 179, 243, 432
LweI GCATC 2 cut(s) 505, 758
MaeI CTAG 2 cut(s) 539, 855
MaeII ACGT 3 cut(s) 94, 319, 809
MaeIII GTNAC 1 cut(s) 756
MalI GATC 4 cut(s) 286, 324, 381, 726
MboI GATC 4 cut(s) 284, 322, 379, 724
MboII GAAGA 2 cut(s) 226, 852
MflI RGATCY 1 cut(s) 284
MluCI AATT 4 cut(s) 21, 486, 761, 858
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 2 cut(s) 421, 538
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 9 cut(s) 151, 156, 190, 411, 435, 446, 664, 694, 836
MseI TTAA 2 cut(s) 24, 614
MslI CAYNNNNRTG 2 cut(s) 390, 453
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 112, 176
NarI GGCGCC 1 cut(s) 138
NcoI CCATGG 1 cut(s) 349
NdeII GATC 4 cut(s) 284, 322, 379, 724
NlaIII CATG 6 cut(s) 48, 145, 158, 353, 389, 515
NlaIV GGNNCC 2 cut(s) 139, 681
NspI RCATGY 1 cut(s) 48
OliI CACNNNNGTG 1 cut(s) 453
PagI TCATGA 1 cut(s) 511
PciI ACATGT 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 6 cut(s) 36, 117, 169, 253, 258, 447
PleI GAGTC 2 cut(s) 421, 537
PluTI GGCGCC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 810
PmlI CACGTG 1 cut(s) 810
PpsI GAGTC 2 cut(s) 421, 537
Ppu21I YACGTR 1 cut(s) 810
PscI ACATGT 1 cut(s) 44
Psp1406I AACGTT 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 742
PspCI CACGTG 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 2 cut(s) 139, 681
PspPI GGNCC 3 cut(s) 117, 177, 275
PstNI CAGNNNCTG 1 cut(s) 634
PsuI RGATCY 1 cut(s) 284
RseI CAYNNNNRTG 2 cut(s) 390, 453
SaqAI TTAA 2 cut(s) 24, 614
SatI GCNGC 6 cut(s) 35, 116, 168, 252, 257, 446
Sau3AI GATC 4 cut(s) 284, 322, 379, 724
Sau96I GGNCC 3 cut(s) 117, 177, 275
SchI GAGTC 2 cut(s) 421, 538
ScrFI CCNGG 1 cut(s) 744
SfaNI GCATC 2 cut(s) 505, 758
SfoI GGCGCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 390, 453
Sse9I AATT 4 cut(s) 21, 486, 761, 858
SsiI CCGC 5 cut(s) 115, 251, 278, 664, 819
SspDI GGCGCC 1 cut(s) 137
SspMI CTAG 2 cut(s) 539, 855
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 593, 834
TaiI ACGT 3 cut(s) 97, 322, 812
TaqI TCGA 5 cut(s) 311, 382, 501, 619, 766
TasI AATT 4 cut(s) 21, 486, 761, 858
TauI GCSGC 2 cut(s) 118, 254
Tru1I TTAA 2 cut(s) 24, 614
Tru9I TTAA 2 cut(s) 24, 614
TscAI CASTG 2 cut(s) 635, 646
TseI GCWGC 4 cut(s) 34, 167, 256, 445
TspDTI ATGAA 3 cut(s) 33, 219, 500
TspRI CASTG 2 cut(s) 635, 646
Van91I CCANNNNNTGG 1 cut(s) 244
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 48
XspI CTAG 2 cut(s) 539, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.