Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000429.1

Orthogroup ID

OG0014675

Physical Location & Seq

Genomic Coordinates Forward (+)

127380 .. 131389

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000429.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgccactcgggctaataatggggctaggaagggcatttcgtcgaaagcgaacggcatcccttgacattctttccccaaaacgagccccaaggaatttttacaaggggaagaactgcaagcccactggtttccacacccgaaaaggtggatatgttgtggtgcaggacaaactacccaactatgtagtccccgatttaacagacttcaagctcaaaccatatgtatctcagtgccccaaagaggtcaagactgcagacgacggcgccatgcctcgccggcatgagataggagcagccggacgggcctctggttctcttgctctctgctatgaaaaggttggctgtttgggcatggttctcttccattcttcggtggcggcgttgctggtattgcgagccggctcgggtagatctggtgcgggctgggggatggcttcagggcgacttgatctggttggggctgtccttcgttgccgtggtggttatgtctggtggagcgtctgtgatcgacatgatgatggtgggataccttggagatggtggaggtggatgactcttggcttatggaggctgcgcaaaggtgaaggtggtgttaggattttgattgacgagatctatggcaatctcgtctgggttcatgatgcgtggaggtggttggtggatctgtgggcgtggagtctgaaactggggcgttggcttgggattgggatgatggatggagcttggtcaatcaccgacggtgggttggatatcaggtggttaaatagattcaggcagtggctatgcagtggttggggggccgttactaggcagatggaggtggcggtgcctgagcagttggtcagtcatggtagtttcattaagttttttattagggttttagtttcaggtttttggttaggtcaaataaaacgtccctactcaattgagctagggtttggaggttttggtcgtgttgtggagccatctatatggtgttactcctgggaacaatatgttacaatttcgatgttgtttggttatcaatggaaaggtggattttccttgcacgtggtctggcggtttatggacacggtgtggaagagggtggagtggttcgtctggatgttggtgacgaggtcgtatcgtgacactcgggattggttatcgttcttcgtagcctggggtgataggcgtaaaaattggttaggggttgaaccttttcggttcatggatgttactattagtgacggactcataactagggatctttgtaggaatatgtgtcgtagtgttgataccacaaccggttattccaatgctttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L27

Protein Analysis

435

Amino Acids

49.97

Weight (kDa)

9.88

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38421
rosa_chinensis	RchiOBHm_Chr1g0332831
rosa_laevigata	RLG00000011127 RLG00000021003 RLG00000025216 RLG00000031581
rosa_multiflora	Rmu_sc0000429.1_g000029
rosa_roxburghii	Rroxscaffold_7G00165190
rosa_rugosa	Rorug05G0463100 Rorug06G0317900
rosa_samantha	Rh2AG115500 Rh4AG143500 Rh6AG431400 Rh6BG471200 Rh6CG443800 Rh6DG430500
rosa_wichuraiana	Rw6G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	575
AccB1I	GGYRCC	2 cut(s)	263, 826
AciI	CCGC	4 cut(s)	377, 419, 824, 1060
AclWI	GGATC	2 cut(s)	669, 1254
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	420
AcvI	CACGTG	1 cut(s)	1051
AcyI	GRCGYC	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	1077
AfiI	CCNNNNNNNGG	4 cut(s)	241, 370, 741, 807
AgeI	ACCGGT	1 cut(s)	1286
AgsI	TTSAA	2 cut(s)	208, 1196
AjnI	CCWGG	2 cut(s)	983, 1160
AluBI	AGCT	3 cut(s)	211, 722, 931
AluI	AGCT	3 cut(s)	211, 722, 931
AlwI	GGATC	2 cut(s)	669, 1254
Ama87I	CYCGRG	3 cut(s)	8, 403, 1134
AoxI	GGCC	2 cut(s)	303, 798
ApeKI	GCWGC	2 cut(s)	293, 571
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
AsiGI	ACCGGT	1 cut(s)	1286
Asp700I	GAANNNNTTC	1 cut(s)	1200
AspLEI	GCGC	2 cut(s)	266, 576
AspS9I	GGNCC	2 cut(s)	303, 798
AsuHPI	GGTGA	4 cut(s)	593, 724, 1123, 1178
AvaI	CYCGRG	3 cut(s)	8, 403, 1134
BaeGI	GKGCMC	1 cut(s)	236
BanI	GGYRCC	2 cut(s)	263, 826
BanII	GRGCYC	1 cut(s)	88
BbrPI	CACGTG	1 cut(s)	1051
BbvI	GCAGC	2 cut(s)	305, 558
BccI	CCATC	7 cut(s)	424, 512, 531, 706, 710, 808, 973
BceAI	ACGGC	4 cut(s)	69, 277, 459, 785
BciT130I	CCWGG	2 cut(s)	985, 1162
BciVI	GTATCC	1 cut(s)	519
BfaI	CTAG	4 cut(s)	26, 807, 932, 1242
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	519
BglI	GCCNNNNNGGC	3 cut(s)	10, 277, 302
BglII	AGATCT	2 cut(s)	410, 612
BisI	GCNGC	3 cut(s)	294, 378, 572
BlsI	GCNGC	3 cut(s)	295, 379, 573
Bme1390I	CCNGG	2 cut(s)	985, 1162
BmeT110I	CYCGRG	3 cut(s)	8, 403, 1134
BmgT120I	GGNCC	2 cut(s)	303, 798
BmiI	GGNNCC	4 cut(s)	265, 799, 828, 963
BmrFI	CCNGG	2 cut(s)	985, 1162
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	2 cut(s)	65, 631
BmuI	ACTGGG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	1051
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	5 cut(s)	89, 475, 530, 984, 1161
BsaWI	WCCGGW	1 cut(s)	1286
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 370, 741, 807
Bse118I	RCCGGY	3 cut(s)	276, 398, 1286
Bse1I	ACTGG	2 cut(s)	130, 690
BseBI	CCWGG	2 cut(s)	985, 1162
BseDI	CCNNGG	5 cut(s)	89, 475, 530, 984, 1161
BseGI	GGATG	7 cut(s)	56, 435, 555, 714, 721, 1110, 1219
BseLI	CCNNNNNNNGG	4 cut(s)	241, 370, 741, 807
BseMII	CTCAG	2 cut(s)	242, 822
BseNI	ACTGG	2 cut(s)	130, 690
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	305, 558
BseYI	CCCAGC	1 cut(s)	423
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	305, 800
BshNI	GGYRCC	2 cut(s)	263, 826
BshTI	ACCGGT	1 cut(s)	1286
BsiHKCI	CYCGRG	3 cut(s)	8, 403, 1134
BsiSI	CCGG	4 cut(s)	277, 297, 399, 1287
BslFI	GGGAC	2 cut(s)	173, 900
BslI	CCNNNNNNNGG	4 cut(s)	241, 370, 741, 807
BsmFI	GGGAC	2 cut(s)	173, 900
BsnI	GGCC	2 cut(s)	305, 800
BsoBI	CYCGRG	3 cut(s)	8, 403, 1134
Bsp1286I	GDGCHC	2 cut(s)	88, 236
Bsp143I	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
BspACI	CCGC	4 cut(s)	377, 419, 824, 1060
BspANI	GGCC	2 cut(s)	305, 800
BspCNI	CTCAG	2 cut(s)	241, 823
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	4 cut(s)	265, 799, 828, 963
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	2 cut(s)	669, 1254
BspT107I	GGYRCC	2 cut(s)	263, 826
BsrFI	RCCGGY	3 cut(s)	276, 398, 1286
BsrI	ACTGG	2 cut(s)	130, 690
BssAI	RCCGGY	3 cut(s)	276, 398, 1286
BssECI	CCNNGG	5 cut(s)	89, 475, 530, 984, 1161
BssMI	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	89, 530
Bst2UI	CCWGG	2 cut(s)	985, 1162
Bst4CI	ACNGT	2 cut(s)	740, 1075
Bst6I	CTCTTC	2 cut(s)	365, 1076
BstACI	GRCGYC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	1051
BstC8I	GCNNGC	5 cut(s)	119, 278, 396, 400, 421
BstDEI	CTNAG	2 cut(s)	228, 831
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	7 cut(s)	56, 435, 555, 714, 721, 1110, 1219
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	266, 576
BstKTI	GATC	6 cut(s)	413, 451, 508, 615, 664, 1249
BstMBI	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 277, 302, 348, 391
BstNI	CCWGG	2 cut(s)	985, 1162
BstSCI	CCNGG	2 cut(s)	983, 1160
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	305, 558
BstX2I	RGATCY	4 cut(s)	410, 612, 661, 1246
BstXI	CCANNNNNNTGG	1 cut(s)	972
BstYI	RGATCY	4 cut(s)	410, 612, 661, 1246
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	305, 800
BtgI	CCRYGG	1 cut(s)	475
BtsCI	GGATG	7 cut(s)	56, 435, 555, 714, 721, 1110, 1219
BtsI	GCAGTG	2 cut(s)	782, 793
BtsIMutI	CAGTG	4 cut(s)	123, 236, 782, 793
Cac8I	GCNNGC	5 cut(s)	119, 278, 396, 400, 421
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	266, 576
Cfr10I	RCCGGY	3 cut(s)	276, 398, 1286
Cfr13I	GGNCC	2 cut(s)	303, 798
CseI	GACGC	1 cut(s)	487
CspAI	ACCGGT	1 cut(s)	1286
CviAII	CATG	7 cut(s)	268, 281, 352, 512, 638, 848, 1210
DdeI	CTNAG	2 cut(s)	228, 831
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	6 cut(s)	412, 450, 507, 614, 663, 1248
DpnII	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
DraIII	CACNNNGTG	1 cut(s)	1077
Eam1104I	CTCTTC	2 cut(s)	365, 1076
EarI	CTCTTC	2 cut(s)	365, 1076
Eco130I	CCWWGG	2 cut(s)	89, 530
Eco24I	GRGCYC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	420
Eco72I	CACGTG	1 cut(s)	1051
Eco88I	CYCGRG	3 cut(s)	8, 403, 1134
EcoRII	CCWGG	2 cut(s)	983, 1160
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	2 cut(s)	89, 530
EcoT38I	GRGCYC	1 cut(s)	88
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	89, 530
FaeI	CATG	7 cut(s)	271, 284, 355, 515, 641, 851, 1213
FaqI	GGGAC	2 cut(s)	173, 900
FatI	CATG	7 cut(s)	267, 280, 351, 511, 637, 847, 1209
FauI	CCCGC	1 cut(s)	412
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	294, 378, 572
FokI	GGATG	7 cut(s)	43, 442, 562, 721, 728, 1117, 1226
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	294, 378, 572
FspBI	CTAG	4 cut(s)	26, 807, 932, 1242
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	2 cut(s)	265, 575
GluI	GCNGC	3 cut(s)	294, 378, 572
GsaI	CCCAGC	1 cut(s)	427
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	305, 800
HapII	CCGG	4 cut(s)	277, 297, 399, 1287
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	2 cut(s)	266, 576
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	7 cut(s)	271, 284, 355, 515, 641, 851, 1213
Hin6I	GCGC	2 cut(s)	264, 574
HinP1I	GCGC	2 cut(s)	264, 574
HinfI	GANTC	4 cut(s)	553, 676, 768, 1233
HpaII	CCGG	4 cut(s)	277, 297, 399, 1287
HphI	GGTGA	4 cut(s)	593, 724, 1123, 1178
Hpy188I	TCNGA	1 cut(s)	681
Hpy188III	TCNNGA	5 cut(s)	247, 638, 1102, 1127, 1136
Hpy99I	CGWCG	3 cut(s)	45, 263, 740
HpyAV	CCTTC	3 cut(s)	24, 476, 578
HpyCH4III	ACNGT	2 cut(s)	740, 1075
HpyCH4IV	ACGT	2 cut(s)	913, 1050
HpyCH4V	TGCA	5 cut(s)	117, 163, 254, 786, 1048
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 277, 302, 348, 391
HpyF3I	CTNAG	2 cut(s)	228, 831
HpySE526I	ACGT	2 cut(s)	913, 1050
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	7 cut(s)	271, 284, 355, 515, 641, 851, 1213
HspAI	GCGC	2 cut(s)	264, 574
KasI	GGCGCC	1 cut(s)	263
KroI	GCCGGC	2 cut(s)	276, 398
KroNI	GCCGGC	2 cut(s)	278, 400
Kzo9I	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
LmnI	GCTCC	4 cut(s)	290, 495, 719, 961
Lsp1109I	GCAGC	2 cut(s)	305, 558
LweI	GCATC	2 cut(s)	65, 631
MaeI	CTAG	4 cut(s)	26, 807, 932, 1242
MaeII	ACGT	2 cut(s)	913, 1050
MaeIII	GTNAC	7 cut(s)	802, 977, 997, 1111, 1127, 1216, 1226
MalI	GATC	6 cut(s)	412, 450, 507, 614, 663, 1248
MboI	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
MboII	GAAGA	5 cut(s)	121, 352, 360, 1093, 1144
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	4 cut(s)	410, 612, 661, 1246
MhlI	GDGCHC	2 cut(s)	88, 236
MluCI	AATT	4 cut(s)	94, 924, 1002, 1180
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	3 cut(s)	547, 685, 1227
MmeI	TCCRAC	1 cut(s)	726
MroNI	GCCGGC	2 cut(s)	276, 398
MroXI	GAANNNNTTC	1 cut(s)	1200
MseI	TTAA	3 cut(s)	197, 761, 861
MslI	CAYNNNNRTG	2 cut(s)	516, 970
MspI	CCGG	4 cut(s)	277, 297, 399, 1287
MspR9I	CCNGG	2 cut(s)	985, 1162
MunI	CAATTG	1 cut(s)	924
MvaI	CCWGG	2 cut(s)	985, 1162
MwoI	GCNNNNNNNGC	5 cut(s)	10, 277, 302, 348, 391
NaeI	GCCGGC	2 cut(s)	278, 400
NarI	GGCGCC	1 cut(s)	264
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
NgoMIV	GCCGGC	2 cut(s)	276, 398
NlaIII	CATG	7 cut(s)	271, 284, 355, 515, 641, 851, 1213
NlaIV	GGNNCC	4 cut(s)	265, 799, 828, 963
NmuCI	GTSAC	3 cut(s)	1111, 1127, 1226
NsbI	TGCGCA	1 cut(s)	575
PagI	TCATGA	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	2 cut(s)	46, 377
PdiI	GCCGGC	2 cut(s)	278, 400
PdmI	GAANNNNTTC	1 cut(s)	1200
PfeI	GAWTC	1 cut(s)	768
PflFI	GACNNNGTC	1 cut(s)	1117
PinAI	ACCGGT	1 cut(s)	1286
PkrI	GCNGC	3 cut(s)	295, 379, 573
PleI	GAGTC	3 cut(s)	547, 684, 1227
PluTI	GGCGCC	1 cut(s)	267
PmaCI	CACGTG	1 cut(s)	1051
PmlI	CACGTG	1 cut(s)	1051
PpsI	GAGTC	3 cut(s)	547, 684, 1227
Ppu21I	YACGTR	1 cut(s)	1051
Psp6I	CCWGG	2 cut(s)	983, 1160
PspCI	CACGTG	1 cut(s)	1051
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	2 cut(s)	983, 1160
PspN4I	GGNNCC	4 cut(s)	265, 799, 828, 963
PspPI	GGNCC	2 cut(s)	303, 798
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	4 cut(s)	410, 612, 661, 1246
PsyI	GACNNNGTC	1 cut(s)	1117
RseI	CAYNNNNRTG	2 cut(s)	516, 970
SaqAI	TTAA	3 cut(s)	197, 761, 861
SatI	GCNGC	3 cut(s)	294, 378, 572
Sau3AI	GATC	6 cut(s)	410, 448, 505, 612, 661, 1246
Sau96I	GGNCC	2 cut(s)	303, 798
SchI	GAGTC	3 cut(s)	547, 685, 1227
ScrFI	CCNGG	2 cut(s)	985, 1162
SduI	GDGCHC	2 cut(s)	88, 236
SfaNI	GCATC	2 cut(s)	65, 631
SfcI	CTRYAG	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	516, 970
Sse9I	AATT	4 cut(s)	94, 924, 1002, 1180
SsiI	CCGC	4 cut(s)	377, 419, 824, 1060
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	4 cut(s)	26, 807, 932, 1242
StyD4I	CCNGG	2 cut(s)	983, 1160
StyI	CCWWGG	2 cut(s)	89, 530
TaaI	ACNGT	2 cut(s)	740, 1075
TaiI	ACGT	2 cut(s)	916, 1053
TaqI	TCGA	3 cut(s)	43, 508, 1007
TasI	AATT	4 cut(s)	94, 924, 1002, 1180
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	3 cut(s)	197, 761, 861
Tru9I	TTAA	3 cut(s)	197, 761, 861
TscAI	CASTG	4 cut(s)	130, 236, 782, 793
TseFI	GTSAC	3 cut(s)	1111, 1127, 1226
TseI	GCWGC	2 cut(s)	293, 571
Tsp45I	GTSAC	3 cut(s)	1111, 1127, 1226
TspDTI	ATGAA	4 cut(s)	345, 626, 847, 1198
TspGWI	ACGGA	1 cut(s)	1245
TspRI	CASTG	4 cut(s)	130, 236, 782, 793
Tth111I	GACNNNGTC	1 cut(s)	1117
XapI	RAATTY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	1200
XspI	CTAG	4 cut(s)	26, 807, 932, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.