Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014675

Physical Location & Seq

Genomic Coordinates Forward (+)

10366705 .. 10367118

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCTCGCTGGCATGAGATAGGAGCAGCTGGACCGGCCTCTGGTTCTTTTGCTCTCTGCTATGAAATGCTTGGCTATTTGGGCATGGTTTTCTTCCATTCTCTGGTGGAGGCGCTGCTGGTATTGCGAGCCAACCCGCGCATATCTGGTGTGGGTTGGGGGATGGCTTCGGGGCGACGTGATTTGGTTGGGGCTGTCCTTCGTTGCCATGGTGGTTCTGTTTGGTGGAGCGTCGGTGATCGACATGATAGTGGTGGGATATATTGGAGATGGTGGAAGGGGATGACTCTTGGCTTATGGAGGCTGCGCAGAGTTGAAGGTGGTGTTAGGATGTTGATTGACGAGATCTGTGGCAATCTCGTATGGGTTCATGATGCATGGCGGTGGTTGGTGGCTCTTGGGTCTGGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.29

Weight (kDa)

9.41

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38421
rosa_chinensis	RchiOBHm_Chr1g0332831
rosa_laevigata	RLG00000011127 RLG00000021003 RLG00000025216 RLG00000031581
rosa_multiflora	Rmu_sc0000429.1_g000029
rosa_roxburghii	Rroxscaffold_7G00165190
rosa_rugosa	Rorug05G0463100 Rorug06G0317900
rosa_samantha	Rh2AG115500 Rh4AG143500 Rh6AG431400 Rh6BG471200 Rh6CG443800 Rh6DG430500
rosa_wichuraiana	Rw6G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccII	CGCG	1 cut(s)	139
AciI	CCGC	2 cut(s)	137, 382
AfiI	CCNNNNNNNGG	2 cut(s)	41, 103
AgsI	TTSAA	1 cut(s)	317
AjiI	CACGTC	1 cut(s)	179
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	26, 115, 304
AspLEI	GCGC	3 cut(s)	115, 141, 309
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	38, 102, 291
BccI	CCATC	2 cut(s)	157, 264
BfoI	RGCGCY	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	3 cut(s)	27, 116, 305
BlsI	GCNGC	3 cut(s)	28, 117, 306
Bme18I	GGWCC	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 103
Bse118I	RCCGGY	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	3 cut(s)	168, 288, 336
BseLI	CCNNNNNNNGG	2 cut(s)	41, 103
BseXI	GCAGC	3 cut(s)	38, 102, 291
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	41, 103
BsnI	GGCC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	238, 345
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	2 cut(s)	137, 382
BspANI	GGCC	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	238, 345
BssT1I	CCWWGG	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	11, 129
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	3 cut(s)	168, 288, 336
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	115, 141, 309
BstKTI	GATC	2 cut(s)	241, 348
BstMBI	GATC	2 cut(s)	238, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 35, 81, 124
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	38, 102, 291
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	3 cut(s)	168, 288, 336
Cac8I	GCNNGC	2 cut(s)	11, 129
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	3 cut(s)	115, 141, 309
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	220
CviAII	CATG	6 cut(s)	14, 85, 209, 245, 371, 378
CviJI	RGCY	9 cut(s)	29, 38, 75, 131, 167, 194, 294, 304, 395
CviKI_1	RGCY	9 cut(s)	29, 38, 75, 131, 167, 194, 294, 304, 395
DpnI	GATC	2 cut(s)	240, 347
DpnII	GATC	2 cut(s)	238, 345
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	6 cut(s)	17, 88, 212, 248, 374, 381
FatI	CATG	6 cut(s)	13, 84, 208, 244, 370, 377
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	27, 116, 305
FokI	GGATG	3 cut(s)	175, 295, 343
Fsp4HI	GCNGC	3 cut(s)	27, 116, 305
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	3 cut(s)	114, 140, 308
GluI	GCNGC	3 cut(s)	27, 116, 305
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	3 cut(s)	115, 141, 309
Hin1II	CATG	6 cut(s)	17, 88, 212, 248, 374, 381
Hin6I	GCGC	3 cut(s)	113, 139, 307
HinP1I	GCGC	3 cut(s)	113, 139, 307
HinfI	GANTC	2 cut(s)	286, 408
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	2 cut(s)	371, 405
Hpy99I	CGWCG	2 cut(s)	180, 236
HpyAV	CCTTC	3 cut(s)	209, 271, 311
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 35, 81, 124
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	17, 88, 212, 248, 374, 381
HspAI	GCGC	3 cut(s)	113, 139, 307
Kzo9I	GATC	2 cut(s)	238, 345
LmnI	GCTCC	2 cut(s)	23, 228
LpnPI	CCDG	7 cut(s)	15, 27, 48, 89, 104, 132, 390
Lsp1109I	GCAGC	3 cut(s)	38, 102, 291
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	1 cut(s)	178
MalI	GATC	2 cut(s)	240, 347
MboI	GATC	2 cut(s)	238, 345
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	4 cut(s)	15, 49, 103, 294
Mph1103I	ATGCAT	1 cut(s)	379
MslI	CAYNNNNRTG	2 cut(s)	249, 382
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	10, 35, 81, 124
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	238, 345
NlaIII	CATG	6 cut(s)	17, 88, 212, 248, 374, 381
NsbI	TGCGCA	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	379
PagI	TCATGA	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	28, 117, 306
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	249, 382
SatI	GCNGC	3 cut(s)	27, 116, 305
Sau3AI	GATC	2 cut(s)	238, 345
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	280
SetI	ASST	3 cut(s)	31, 181, 322
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	2 cut(s)	249, 382
SsiI	CCGC	2 cut(s)	137, 382
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	241
TseI	GCWGC	3 cut(s)	26, 115, 304
TspDTI	ATGAA	2 cut(s)	78, 359
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.