Rorug05G0463100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014675
Physical Location & Seq
Forward (+)
63829866 .. 63830267
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0463100.1

Sequence Viewer

Length: 402 bp
ATGGAGTTTGAGGCTATGAGAGCAGGACTCCTATTGGCTATACATCAGGGCATGATTAATGTTGACATTGAAACTGATTGTGTTGTTGTTACTGCACTTAATGGAGAGATGGAGGATCTTTCAGAGACTGGCTGTATTGTGGAGGATTGTAAGGCCTATTTACAGGCTATTTCTTCTTTTCATTTACAGTCCATTTACCGTGAAGCAAATAGTGTAGCCCATAGATTGATGCACCTTGCTAATTTATCTATTTTAGATGAGTATTGGTTAGAGGAGGCACCTGTTATTATTCAGGATGCACTCTATGAGGATTTTTATACTAGTACTCAAGGTGAAGGTTATATATCCCCCTCGGTGTACAATCATCCTTCTATTATCAATAATATTTGGGTGTGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.01

Weight (kDa)

4.23

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 77 1.9e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AclWI GGATC 1 cut(s) 123
AfaI GTAC 2 cut(s) 325, 359
AgsI TTSAA 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 1 cut(s) 153
AseI ATTAAT 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 277
BccI CCATC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 119
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BmcAI AGTACT 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 2 cut(s) 219, 286
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BpuEI CTTGAG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 301, 364
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 115
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 189, 200
BstAUI TGTACA 1 cut(s) 357
BstF5I GGATG 2 cut(s) 301, 364
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 301, 364
CaiI CAGNNNCTG 1 cut(s) 128
Csp6I GTAC 2 cut(s) 324, 358
CviAII CATG 1 cut(s) 52
CviJI RGCY 7 cut(s) 14, 38, 132, 155, 167, 218, 399
CviKI_1 RGCY 7 cut(s) 14, 38, 132, 155, 167, 218, 399
CviQI GTAC 2 cut(s) 324, 358
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 155
FaeI CATG 1 cut(s) 55
FaiI YATR 8 cut(s) 17, 41, 53, 222, 306, 318, 342, 344
FatI CATG 1 cut(s) 51
FokI GGATG 2 cut(s) 308, 351
FspBI CTAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 64, 358
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 2 cut(s) 64, 358
HpyAV CCTTC 2 cut(s) 329, 378
HpyCH4III ACNGT 2 cut(s) 189, 200
HpyCH4V TGCA 3 cut(s) 95, 232, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 9, 32, 114, 149, 278, 294
LweI GCATC 2 cut(s) 219, 286
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 165
MflI RGATCY 1 cut(s) 115
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 7 cut(s) 4, 106, 136, 265, 268, 301, 361
MseI TTAA 2 cut(s) 57, 99
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 279
PceI AGGCCT 1 cut(s) 155
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PshBI ATTAAT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 325, 359
RsaNI GTAC 2 cut(s) 324, 358
SaqAI TTAA 2 cut(s) 57, 99
Sau3AI GATC 1 cut(s) 115
ScaI AGTACT 1 cut(s) 325
SchI GAGTC 1 cut(s) 21
SetI ASST 4 cut(s) 237, 283, 334, 340
SfaNI GCATC 2 cut(s) 219, 286
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 1 cut(s) 241
SseBI AGGCCT 1 cut(s) 155
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 321
StuI AGGCCT 1 cut(s) 155
TaaI ACNGT 2 cut(s) 189, 200
TasI AATT 1 cut(s) 241
TatI WGTACW 2 cut(s) 323, 357
Tru1I TTAA 2 cut(s) 57, 99
Tru9I TTAA 2 cut(s) 57, 99
TspDTI ATGAA 1 cut(s) 170
VspI ATTAAT 1 cut(s) 57
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.