FvH4_2g39930

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014678
Physical Location & Seq
Reverse (-)
28537947 .. 28539385
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39930.t2

Sequence Viewer

Length: 591 bp
ATGAAAGACCAAGATGCACCACCGACACTCATCTCTATTCCCTCACCAACCACCACAACTCCTCTGATCAGAAAACCGGACAGCTCACCGTCGTCGTCAAAAGCAGCTCGACTGTTTGTTGTCAAGAATCGTTACAAGTTGTGGGTTCTAGCTGCGATTCTCTTGCTTGCTTTCTGGTCTATGTTCACCGGCTCCGTCACCCTCAGATGGTCCGCTGGCAACTTAACCGGCCTTTCCGACGACCTCAACATCCCTACTTATGACGATCTTGATATTCTGGAAGTGGAGGACAGAGAGAAGGTGGTGAGGCACTTGTGGGATTTGTACACGCAGAGGCAGAGCGGGTCAGGTAGGAAAAGCACGACCCGACTGCCTCGGTTTTGGCAGGAGGCTTTTGAAGCAGCTTATGATCCTTTGAGCAGTGATGTTCCTGCTGTGAGAAACGCTGCTGTTTCTGAGATTGCTAAGATGTCCATTCGCTTCATCAATGTTGTTGATCCTTTTCCACTTCAATCCAAGGGCATTAGGGAACAACTGAAAAGGAAGATCAAGGAAACCAAGAAAAGCAAGGAGATAGGGAGCAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

197

Amino Acids

22.08

Weight (kDa)

9.66

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 18 - 167 9e-61 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 2 cut(s) 213, 342
AclWI GGATC 2 cut(s) 404, 491
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 2 cut(s) 398, 512
AluBI AGCT 4 cut(s) 84, 107, 152, 404
AluI AGCT 4 cut(s) 84, 107, 152, 404
AlwI GGATC 2 cut(s) 404, 491
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 4 cut(s) 104, 152, 401, 446
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 5 cut(s) 36, 78, 178, 190, 316
AvaII GGWCC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 116, 139, 413, 433
BccI CCATC 1 cut(s) 201
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 352, 386
BclI TGATCA 1 cut(s) 66
BfaI CTAG 1 cut(s) 149
BisI GCNGC 4 cut(s) 105, 153, 402, 447
BlsI GCNGC 4 cut(s) 106, 154, 403, 448
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 193
BmsI GCATC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 374, 516
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 2 cut(s) 188, 227
BseDI CCNNGG 2 cut(s) 374, 516
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 217, 447
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 116, 139, 413, 433
BshFI GGCC 1 cut(s) 231
BsiSI CCGG 3 cut(s) 77, 189, 228
BslI CCNNNNNNNGG 1 cut(s) 207
BsnI GGCC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 324
Bsp143I GATC 5 cut(s) 66, 265, 409, 496, 546
BspACI CCGC 2 cut(s) 213, 342
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 216, 448
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 2 cut(s) 404, 491
BsrBI CCGCTC 1 cut(s) 342
BsrFI RCCGGY 2 cut(s) 188, 227
BsrGI TGTACA 1 cut(s) 324
BssAI RCCGGY 2 cut(s) 188, 227
BssECI CCNNGG 2 cut(s) 374, 516
BssMI GATC 5 cut(s) 66, 265, 409, 496, 546
BssT1I CCWWGG 1 cut(s) 516
Bst4CI ACNGT 2 cut(s) 90, 114
BstAUI TGTACA 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 168, 217
BstDEI CTNAG 3 cut(s) 203, 456, 465
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 5 cut(s) 69, 268, 412, 499, 549
BstMBI GATC 5 cut(s) 66, 265, 409, 496, 546
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstV1I GCAGC 4 cut(s) 116, 139, 413, 433
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 168, 217
Cfr10I RCCGGY 2 cut(s) 188, 227
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 325
CviJI RGCY 7 cut(s) 84, 107, 152, 192, 231, 392, 404
CviKI_1 RGCY 7 cut(s) 84, 107, 152, 192, 231, 392, 404
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 203, 456, 465
DpnI GATC 5 cut(s) 68, 267, 411, 498, 548
DpnII GATC 5 cut(s) 66, 265, 409, 496, 546
Eco130I CCWWGG 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaiI YATR 4 cut(s) 182, 261, 408, 589
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 105, 153, 402, 447
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 4 cut(s) 105, 153, 402, 447
FspBI CTAG 1 cut(s) 149
GluI GCNGC 4 cut(s) 105, 153, 402, 447
HaeIII GGCC 1 cut(s) 231
HapII CCGG 3 cut(s) 77, 189, 228
HinfI GANTC 2 cut(s) 127, 157
HpaII CCGG 3 cut(s) 77, 189, 228
HphI GGTGA 5 cut(s) 36, 78, 178, 190, 316
Hpy166II GTNNAC 2 cut(s) 186, 327
Hpy188I TCNGA 5 cut(s) 66, 71, 206, 238, 457
Hpy188III TCNNGA 3 cut(s) 124, 269, 278
Hpy8I GTNNAC 2 cut(s) 186, 327
Hpy99I CGWCG 3 cut(s) 94, 97, 242
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 90, 114
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 203, 456, 465
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 5 cut(s) 66, 265, 409, 496, 546
LmnI GCTCC 2 cut(s) 197, 579
LpnPI CCDG 9 cut(s) 90, 160, 201, 202, 241, 263, 333, 371, 444
Lsp1109I GCAGC 4 cut(s) 116, 139, 413, 433
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 131, 196
MalI GATC 5 cut(s) 68, 267, 411, 498, 548
MbiI CCGCTC 1 cut(s) 342
MboI GATC 5 cut(s) 66, 265, 409, 496, 546
MboII GAAGA 1 cut(s) 556
MluCI AATT 1 cut(s) 583
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 9 cut(s) 52, 72, 212, 254, 280, 300, 327, 382, 384
MseI TTAA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 3 cut(s) 77, 189, 228
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 5 cut(s) 66, 265, 409, 496, 546
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 127, 157
PkrI GCNGC 4 cut(s) 106, 154, 403, 448
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 4 cut(s) 105, 153, 402, 447
Sau3AI GATC 5 cut(s) 66, 265, 409, 496, 546
Sau96I GGNCC 1 cut(s) 210
SetI ASST 7 cut(s) 86, 109, 154, 246, 303, 352, 406
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 210
Sse9I AATT 1 cut(s) 583
SsiI CCGC 2 cut(s) 213, 342
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 2 cut(s) 90, 114
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 583
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 127, 157
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 4 cut(s) 104, 152, 401, 446
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 17, 472, 576
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 210
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.