Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014678

Physical Location & Seq

Genomic Coordinates Forward (+)

1989959 .. 1990647

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGGACAACGATGCACCAACACTGATAACGATCCCATCATCAACGGCGATCAGGAAGGACGCCTCATCGTCGTCATCATCCTCGAAAACCAGAGTCTTTCTCGACAAAAATGGCTACAAGTTCTGGGCTTTAGCGGCGATTCTTCTCCTTGCTTTCTGGTCCATGTTCACCGGCTCCGTCACCCTCAAATGGTCCACCGGCAACTTGTCCCGCCTCTCCGACGACCTCGACATCCCGACCTTCGACGATCTCGACATTCTGGAGGTGGAGGAGAGAGAGAAGGTGGTGAGGCACATGTGGGATTTGTACACGCAGACCACCAGCACCAGCACGAGTCGATTGCCGCGGTTTTGGCAGGAGGCTTTCGAGGCGGCGTACGAGCACTTGACCAGCGATGTTGCCGCCGTTCGAGACGCCGCCGTTTCGGAGATTGCCAAGATGTCCATCCGCTCCATCGTTCTTGATCCCTTTCCTCTTCAATCAACGGTCAGTAAGCCCTCTGATCTGCATAATCAAATCTCTTTTATGTTAATGGGTGATCATTTTTCTGCTAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1195

Protein Analysis

188

Amino Acids

21.02

Weight (kDa)

5.33

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014678)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39930 FvH4_2g39930
malus_domestica	MD08G1034200.v1.1 MD15G1031100.v1.1
prunus_persica	Prupe.1G380800_v2.0.a1 Prupe.6G064600_v2.0.a1
pyrus_communis	pycom08g02730 pycom15g02700
rosa_chinensis	RchiOBHm_Chr6g0300851
rosa_laevigata	RLG00000011296
rosa_multiflora	Rmu_sc0008947.1_g000007
rosa_roxburghii	Rroxscaffold_7G00167370
rosa_rugosa	Rorug06G0299400
rosa_samantha	Rh6AG412500 Rh6BG419700 Rh6CG427200 Rh6DG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	453
AccII	CGCG	1 cut(s)	349
AciI	CCGC	8 cut(s)	137, 214, 347, 349, 374, 405, 420, 451
AclWI	GGATC	2 cut(s)	28, 461
AcsI	RAATTY	1 cut(s)	557
AcyI	GRCGYC	2 cut(s)	63, 417
AfaI	GTAC	2 cut(s)	311, 380
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	482
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	28, 461
ApoI	RAATTY	1 cut(s)	557
AspS9I	GGNCC	2 cut(s)	162, 195
AsuHPI	GGTGA	4 cut(s)	163, 175, 301, 551
AvaII	GGWCC	2 cut(s)	162, 195
BauI	CACGAG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	3 cut(s)	46, 455, 464
BceAI	ACGGC	3 cut(s)	63, 392, 407
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	408
BisI	GCNGC	5 cut(s)	138, 347, 375, 405, 420
BlsI	GCNGC	5 cut(s)	139, 348, 376, 406, 421
Bme18I	GGWCC	2 cut(s)	162, 195
BmgT120I	GGNCC	2 cut(s)	162, 195
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	1 cut(s)	284
BsaBI	GATNNNNATC	2 cut(s)	32, 446
BsaHI	GRCGYC	2 cut(s)	63, 417
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	2 cut(s)	173, 200
Bse8I	GATNNNNATC	2 cut(s)	32, 446
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	3 cut(s)	80, 234, 447
BseJI	GATNNNNATC	2 cut(s)	32, 446
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	174, 201
BsiWI	CGTACG	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	408
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
BspACI	CCGC	8 cut(s)	137, 214, 347, 349, 374, 405, 420, 451
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	28, 461
BsrBI	CCGCTC	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	173, 200
BsrGI	TGTACA	1 cut(s)	309
BssAI	RCCGGY	2 cut(s)	173, 200
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
BssNI	GRCGYC	2 cut(s)	63, 417
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	2 cut(s)	63, 417
BstAUI	TGTACA	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	80, 234, 447
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	6 cut(s)	36, 54, 253, 469, 508, 544
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 355, 371
BstNSI	RCATGY	1 cut(s)	301
BstUI	CGCG	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	3 cut(s)	80, 234, 447
BtsIMutI	CAGTG	1 cut(s)	23
Cfr10I	RCCGGY	2 cut(s)	173, 200
Cfr13I	GGNCC	2 cut(s)	162, 195
Cfr42I	CCGCGG	1 cut(s)	350
CseI	GACGC	2 cut(s)	71, 425
Csp6I	GTAC	2 cut(s)	310, 379
CviAII	CATG	2 cut(s)	166, 298
CviJI	RGCY	5 cut(s)	117, 131, 177, 365, 499
CviKI_1	RGCY	5 cut(s)	117, 131, 177, 365, 499
CviQI	GTAC	2 cut(s)	310, 379
DpnI	GATC	6 cut(s)	35, 53, 252, 468, 507, 543
DpnII	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	162, 195
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	2 cut(s)	169, 301
FaiI	YATR	4 cut(s)	167, 299, 513, 530
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	165, 297
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	5 cut(s)	138, 347, 375, 405, 420
FokI	GGATG	3 cut(s)	67, 221, 434
Fsp4HI	GCNGC	5 cut(s)	138, 347, 375, 405, 420
GluI	GCNGC	5 cut(s)	138, 347, 375, 405, 420
GsuI	CTGGAG	1 cut(s)	284
HapII	CCGG	2 cut(s)	174, 201
HgaI	GACGC	2 cut(s)	71, 425
Hin1I	GRCGYC	2 cut(s)	63, 417
Hin1II	CATG	2 cut(s)	169, 301
HinfI	GANTC	3 cut(s)	96, 142, 337
HpaII	CCGG	2 cut(s)	174, 201
HphI	GGTGA	4 cut(s)	163, 175, 301, 551
Hpy166II	GTNNAC	3 cut(s)	171, 198, 312
Hpy188I	TCNGA	3 cut(s)	223, 430, 505
Hpy188III	TCNNGA	7 cut(s)	55, 104, 238, 254, 263, 413, 464
Hpy8I	GTNNAC	3 cut(s)	171, 198, 312
Hpy99I	CGWCG	3 cut(s)	76, 227, 251
HpyAV	CCTTC	3 cut(s)	52, 253, 277
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	2 cut(s)	17, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 355, 371
Hsp92I	GRCGYC	2 cut(s)	63, 417
Hsp92II	CATG	2 cut(s)	169, 301
Ksp22I	TGATCA	1 cut(s)	541
KspI	CCGCGG	1 cut(s)	350
Kzo9I	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
LmnI	GCTCC	2 cut(s)	182, 458
LweI	GCATC	1 cut(s)	4
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	6 cut(s)	35, 53, 252, 468, 507, 543
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
MboII	GAAGA	2 cut(s)	137, 470
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	105, 346
MmeI	TCCRAC	1 cut(s)	246
MseI	TTAA	2 cut(s)	533, 562
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	2 cut(s)	174, 201
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	3 cut(s)	137, 355, 371
NdeII	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
NlaIII	CATG	2 cut(s)	169, 301
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	301
PciI	ACATGT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	142
Pfl23II	CGTACG	1 cut(s)	378
PkrI	GCNGC	5 cut(s)	139, 348, 376, 406, 421
PleI	GAGTC	2 cut(s)	104, 345
PpsI	GAGTC	2 cut(s)	104, 345
PscI	ACATGT	1 cut(s)	297
PspLI	CGTACG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	162, 195
RsaI	GTAC	2 cut(s)	311, 380
RsaNI	GTAC	2 cut(s)	310, 379
SacII	CCGCGG	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	533, 562
SatI	GCNGC	5 cut(s)	138, 347, 375, 405, 420
Sau3AI	GATC	6 cut(s)	33, 51, 250, 466, 505, 541
Sau96I	GGNCC	2 cut(s)	162, 195
SchI	GAGTC	2 cut(s)	105, 346
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	4 cut(s)	231, 245, 270, 288
SfaNI	GCATC	1 cut(s)	4
Sfr303I	CCGCGG	1 cut(s)	350
SgrBI	CCGCGG	1 cut(s)	350
SinI	GGWCC	2 cut(s)	162, 195
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	8 cut(s)	137, 214, 347, 349, 374, 405, 420, 451
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	8 cut(s)	86, 105, 231, 246, 255, 340, 369, 412
TasI	AATT	1 cut(s)	557
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	5 cut(s)	140, 349, 377, 407, 422
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	533, 562
Tru9I	TTAA	2 cut(s)	533, 562
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	162, 195
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.