Rh6DG412500

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014678
Physical Location & Seq
Forward (+)
59822811 .. 59824065
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG412500.1

Sequence Viewer

Length: 408 bp
ATGAAAGACGAAGATGCACCACCGACACTCGTCTCAATTCCCTCTCCAACCACCGCCGCAACTCCGCTGATCAGGAAACCGGAGAGCTCACCCTCGTCTTCGTCAAAAGCAGCTCGGCTGTTTGTTGTCAAGAATCGCTACAAGTTCTGGGCTCTAGCGGCGATTCTGTTGCTAGCTTTCTGGTCTATGTTCACCGGCTCCGTTACGCTCAGATGGTCTGCCGGCAACTTAACCGGCCTTTCCGACCAGCTCAACCTCCCGAGTTACGACGATCTTGATATTCTGGAAGTGGAGGACAGAGAGAAGGTGGTGAGGCACTTGTGGGATTTGTACACGCAGAGGCAGACGGGGGGGGTCGAGCAGAAGAAGCACGACCCGACTGCCTCGGTTTTGGCAGGAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

135

Amino Acids

14.93

Weight (kDa)

6.73

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 15 - 115 1.1e-38 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 54, 57, 65, 158
AfaI GTAC 1 cut(s) 332
AluBI AGCT 4 cut(s) 87, 113, 176, 250
AluI AGCT 4 cut(s) 87, 113, 176, 250
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 3 cut(s) 81, 184, 322
AsuNHI GCTAGC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 259
BanII GRGCYC 2 cut(s) 89, 154
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 207
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 362, 396
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 155, 173
BisI GCNGC 3 cut(s) 57, 111, 159
BlsI GCNGC 3 cut(s) 58, 112, 160
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 3 cut(s) 194, 221, 233
BseDI CCNNGG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 4 cut(s) 80, 195, 222, 234
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 89, 154
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 2 cut(s) 69, 271
BspACI CCGC 4 cut(s) 54, 57, 65, 158
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 176
BsrFI RCCGGY 3 cut(s) 194, 221, 233
BsrGI TGTACA 1 cut(s) 330
BssAI RCCGGY 3 cut(s) 194, 221, 233
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 2 cut(s) 69, 271
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 174, 223
BstDEI CTNAG 1 cut(s) 209
BstKTI GATC 2 cut(s) 72, 274
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 69, 271
BstMWI GCNNNNNNNGC 2 cut(s) 158, 367
BstPAI GACNNNNGTC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 174, 223
Cfr10I RCCGGY 3 cut(s) 194, 221, 233
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 9 cut(s) 87, 113, 118, 152, 176, 198, 237, 250, 402
CviKI_1 RGCY 9 cut(s) 87, 113, 118, 152, 176, 198, 237, 250, 402
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 71, 273
DpnII GATC 2 cut(s) 69, 271
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 89, 154
Eco53kI GAGCTC 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 89, 154
Esp3I CGTCTC 1 cut(s) 37
FaiI YATR 1 cut(s) 188
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 57, 111, 159
FriOI GRGCYC 2 cut(s) 89, 154
Fsp4HI GCNGC 3 cut(s) 57, 111, 159
FspBI CTAG 2 cut(s) 155, 173
GluI GCNGC 3 cut(s) 57, 111, 159
HaeIII GGCC 1 cut(s) 237
HapII CCGG 4 cut(s) 80, 195, 222, 234
HinfI GANTC 2 cut(s) 133, 163
HpaII CCGG 4 cut(s) 80, 195, 222, 234
HphI GGTGA 3 cut(s) 81, 184, 322
Hpy166II GTNNAC 2 cut(s) 192, 333
Hpy188I TCNGA 2 cut(s) 212, 244
Hpy188III TCNNGA 5 cut(s) 73, 130, 259, 275, 284
Hpy8I GTNNAC 2 cut(s) 192, 333
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 367
HpyF3I CTNAG 1 cut(s) 209
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 271
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 155, 173
MaeIII GTNAC 2 cut(s) 202, 263
MalI GATC 2 cut(s) 71, 273
MboI GATC 2 cut(s) 69, 271
MboII GAAGA 3 cut(s) 23, 90, 376
MhlI GDGCHC 2 cut(s) 89, 154
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 71, 267
MnlI CCTC 8 cut(s) 52, 103, 266, 286, 306, 333, 392, 394
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 4 cut(s) 80, 195, 222, 234
MwoI GCNNNNNNNGC 2 cut(s) 158, 367
NaeI GCCGGC 1 cut(s) 223
NdeII GATC 2 cut(s) 69, 271
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 133, 163
PkrI GCNGC 3 cut(s) 58, 112, 160
PshAI GACNNNNGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 3 cut(s) 57, 111, 159
Sau3AI GATC 2 cut(s) 69, 271
SduI GDGCHC 2 cut(s) 89, 154
SetI ASST 6 cut(s) 89, 115, 178, 252, 258, 309
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 36
SsiI CCGC 4 cut(s) 54, 57, 65, 158
SspMI CTAG 2 cut(s) 155, 173
SstI GAGCTC 1 cut(s) 89
TaqI TCGA 1 cut(s) 357
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 330
TauI GCSGC 2 cut(s) 59, 161
TfiI GAWTC 2 cut(s) 133, 163
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 190
XspI CTAG 2 cut(s) 155, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.