Rh6BG419700

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014678
Physical Location & Seq
Forward (+)
64384133 .. 64385403
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG419700.1

Sequence Viewer

Length: 546 bp
ATGAAAGACGAAGATGCACCACCGACACTCGTCTCAATTCCCTCTCCAACCACCGCCGCAACTCCGCTGATCAGGAAACCGGAGAGCTCACCCTCGTCTTCGTCAAAAGCAGCTCGGCTGTTTGTTGTCAAGAATCGCTACAAGTTCTGGGCTCTAGCGGCGATTCTGTTGCTAGCTTTCTGGTCTATGTTCACCGGCTCCGTTACGCTCAGATGGTCTGCCGGCAACTTAACCGGCCTTTCCGACCAGCTCAACCTCCCGAGTTACGACGATCTTGATATTCTGGAAGTGGAGGACAGAGAGAAGGTGGTGAGGCACTTGTGGGATTTGTACACGCAGAGGCAGACGGGGGGGTCGAGCAGAAGAAGCACGACCCGACTGCCTCGGTTTTGGCAGGAGGCTTTTGAAGCTGCTTATGATCCTTTGAGCAGTGATGTTCCTGCTGTCAGAAACGCTGCCGTTTCTGAGATTGCTAAGATGTCCATTCGCTCCATCAATGTTGTTGACCCCTTCCCACTCCAATCCAAGGTTTGTATTGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

181

Amino Acids

20.15

Weight (kDa)

8.76

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 15 - 170 7.4e-61 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AciI CCGC 4 cut(s) 54, 57, 65, 158
AclWI GGATC 1 cut(s) 413
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 1 cut(s) 407
AluBI AGCT 6 cut(s) 87, 113, 176, 250, 410, 543
AluI AGCT 6 cut(s) 87, 113, 176, 250, 410, 543
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 110, 410, 455
AsuHPI GGTGA 3 cut(s) 81, 184, 322
AsuNHI GCTAGC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 259
BanII GRGCYC 2 cut(s) 89, 154
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 122, 397, 442
BccI CCATC 2 cut(s) 207, 500
BceAI ACGGC 1 cut(s) 443
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 361, 395
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 3 cut(s) 155, 173, 544
BisI GCNGC 5 cut(s) 57, 111, 159, 411, 456
BlsI GCNGC 5 cut(s) 58, 112, 160, 412, 457
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 383, 525
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse118I RCCGGY 3 cut(s) 194, 221, 233
BseDI CCNNGG 2 cut(s) 383, 525
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 2 cut(s) 223, 456
BseXI GCAGC 3 cut(s) 122, 397, 442
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 4 cut(s) 80, 195, 222, 234
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 89, 154
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 3 cut(s) 69, 271, 418
BspACI CCGC 4 cut(s) 54, 57, 65, 158
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 222, 457
BspLI GGNNCC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 413
BsrFI RCCGGY 3 cut(s) 194, 221, 233
BsrGI TGTACA 1 cut(s) 330
BssAI RCCGGY 3 cut(s) 194, 221, 233
BssECI CCNNGG 2 cut(s) 383, 525
BssMI GATC 3 cut(s) 69, 271, 418
BssT1I CCWWGG 1 cut(s) 525
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 174, 223
BstDEI CTNAG 3 cut(s) 209, 465, 474
BstKTI GATC 3 cut(s) 72, 274, 421
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 69, 271, 418
BstMWI GCNNNNNNNGC 3 cut(s) 158, 366, 407
BstPAI GACNNNNGTC 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 122, 397, 442
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 174, 223
Cfr10I RCCGGY 3 cut(s) 194, 221, 233
Csp6I GTAC 1 cut(s) 331
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 3 cut(s) 209, 465, 474
DpnI GATC 3 cut(s) 71, 273, 420
DpnII GATC 3 cut(s) 69, 271, 418
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 2 cut(s) 89, 154
Eco53kI GAGCTC 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 525
EcoT38I GRGCYC 2 cut(s) 89, 154
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 1 cut(s) 37
FaiI YATR 2 cut(s) 188, 417
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 5 cut(s) 57, 111, 159, 411, 456
FriOI GRGCYC 2 cut(s) 89, 154
Fsp4HI GCNGC 5 cut(s) 57, 111, 159, 411, 456
FspBI CTAG 3 cut(s) 155, 173, 544
GluI GCNGC 5 cut(s) 57, 111, 159, 411, 456
HaeIII GGCC 1 cut(s) 237
HapII CCGG 4 cut(s) 80, 195, 222, 234
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 2 cut(s) 133, 163
HpaII CCGG 4 cut(s) 80, 195, 222, 234
HphI GGTGA 3 cut(s) 81, 184, 322
Hpy166II GTNNAC 3 cut(s) 192, 333, 505
Hpy188I TCNGA 4 cut(s) 212, 244, 449, 466
Hpy188III TCNNGA 5 cut(s) 73, 130, 259, 275, 284
Hpy8I GTNNAC 3 cut(s) 192, 333, 505
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 298, 520
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 366, 407
HpyF3I CTNAG 3 cut(s) 209, 465, 474
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 271, 418
LmnI GCTCC 2 cut(s) 203, 494
Lsp1109I GCAGC 3 cut(s) 122, 397, 442
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 155, 173, 544
MaeIII GTNAC 2 cut(s) 202, 263
MalI GATC 3 cut(s) 71, 273, 420
MboI GATC 3 cut(s) 69, 271, 418
MboII GAAGA 3 cut(s) 23, 90, 375
MhlI GDGCHC 2 cut(s) 89, 154
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 71, 267
MnlI CCTC 8 cut(s) 52, 103, 266, 286, 306, 333, 391, 393
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 4 cut(s) 80, 195, 222, 234
MwoI GCNNNNNNNGC 3 cut(s) 158, 366, 407
NaeI GCCGGC 1 cut(s) 223
NdeII GATC 3 cut(s) 69, 271, 418
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 133, 163
PkrI GCNGC 5 cut(s) 58, 112, 160, 412, 457
PshAI GACNNNNGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 5 cut(s) 57, 111, 159, 411, 456
Sau3AI GATC 3 cut(s) 69, 271, 418
SduI GDGCHC 2 cut(s) 89, 154
SetI ASST 9 cut(s) 89, 115, 178, 252, 258, 309, 412, 531, 545
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 36
SsiI CCGC 4 cut(s) 54, 57, 65, 158
SspMI CTAG 3 cut(s) 155, 173, 544
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 525
TaqI TCGA 1 cut(s) 356
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 330
TauI GCSGC 2 cut(s) 59, 161
TfiI GAWTC 2 cut(s) 133, 163
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 436
TseI GCWGC 3 cut(s) 110, 410, 455
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 436
XspI CTAG 3 cut(s) 155, 173, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.