RLG00000011296

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014678
Physical Location & Seq
Reverse (-)
8291108 .. 8292227
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011296

Sequence Viewer

Length: 639 bp
ATGGAAATGGGAATGTTTTGCTATACAGAAATGAAAGATGAAGATGCACCACCGACACTCGTCTCAATTCCCTCACCAACCACCGCCGCAACTCCGCTGATCAGGAAACCGGAGAGCTCACCCTCGTCTTCGTCAAAAGCAGCTCGGCTGTTTGTTGTCAAGAATCGCTACAAGTTCTGGGCTCTAGCGGCGATACTGTTGCTAGCTTTCTGGTCTATGTTCACCGGCTCCGTTACTCTCAGATGGTCAGCCTGCAACTTAACCGGCCTTTCCGACCAGCTCAACCTTCCAACTTACGACGATCTTGATATTCTGGAAGTGGAGGACAGAGAGAAGGTGGTGAGGCACTTGTGGGATTTGTACACGCAGAGGCAGACGGGGTCGAGCAGAAGAAGCACGACCCGACTACTGCCTCGGTTTTGGCAGGAGGCTTTTGAAGCTGCTTATGATCCTTTGAGCAGTGATGTTCCTGCTGTCAGAAACGCTGCCGTTTCTGAGATTGCTAAGATGTCCATTCGCTCCATCAATGTTGTTGACCCCTTCCCACTCCAATCCAAGGGCGTTAGGGAATTGAAAAGGAAGATCAAGAAAGCAAAGGAAAACAAGGAGGTAACTCATACAGTAGGGAGCAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

213

Amino Acids

23.9

Weight (kDa)

9.22

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 25 - 180 3.3e-59 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 87, 95, 188
AclWI GGATC 1 cut(s) 443
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 556
AgsI TTSAA 2 cut(s) 437, 574
AluBI AGCT 5 cut(s) 117, 143, 206, 280, 440
AluI AGCT 5 cut(s) 117, 143, 206, 280, 440
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 3 cut(s) 140, 440, 485
AsuHPI GGTGA 4 cut(s) 66, 111, 214, 352
AsuNHI GCTAGC 1 cut(s) 202
BanII GRGCYC 2 cut(s) 119, 184
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 152, 427, 472
BccI CCATC 2 cut(s) 237, 530
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 185, 203
BisI GCNGC 5 cut(s) 87, 141, 189, 441, 486
BlsI GCNGC 5 cut(s) 88, 142, 190, 442, 487
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 34
BmtI GCTAGC 1 cut(s) 206
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 413, 555
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse118I RCCGGY 2 cut(s) 224, 263
BseDI CCNNGG 2 cut(s) 413, 555
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 253, 486
BseXI GCAGC 3 cut(s) 152, 427, 472
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 110, 225, 264
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 119, 184
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 4 cut(s) 99, 301, 448, 582
BspACI CCGC 4 cut(s) 84, 87, 95, 188
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 2 cut(s) 252, 487
BspLI GGNNCC 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 443
BsrFI RCCGGY 2 cut(s) 224, 263
BsrGI TGTACA 1 cut(s) 360
BssAI RCCGGY 2 cut(s) 224, 263
BssECI CCNNGG 2 cut(s) 413, 555
BssMI GATC 4 cut(s) 99, 301, 448, 582
BssT1I CCWWGG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 198, 622
BstAUI TGTACA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 204, 253
BstDEI CTNAG 3 cut(s) 239, 495, 504
BstKTI GATC 4 cut(s) 102, 304, 451, 585
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 4 cut(s) 99, 301, 448, 582
BstMWI GCNNNNNNNGC 3 cut(s) 188, 393, 437
BstPAI GACNNNNGTC 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 152, 427, 472
BstV2I GAAGAC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 204, 253
Cfr10I RCCGGY 2 cut(s) 224, 263
Csp6I GTAC 1 cut(s) 361
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 239, 495, 504
DpnI GATC 4 cut(s) 101, 303, 450, 584
DpnII GATC 4 cut(s) 99, 301, 448, 582
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 2 cut(s) 119, 184
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 2 cut(s) 119, 184
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 67
FaiI YATR 5 cut(s) 24, 218, 447, 618, 637
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 87, 141, 189, 441, 486
FriOI GRGCYC 2 cut(s) 119, 184
Fsp4HI GCNGC 5 cut(s) 87, 141, 189, 441, 486
FspBI CTAG 2 cut(s) 185, 203
GluI GCNGC 5 cut(s) 87, 141, 189, 441, 486
HaeIII GGCC 1 cut(s) 267
HapII CCGG 3 cut(s) 110, 225, 264
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 1 cut(s) 163
HpaII CCGG 3 cut(s) 110, 225, 264
HphI GGTGA 4 cut(s) 66, 111, 214, 352
Hpy166II GTNNAC 3 cut(s) 222, 363, 535
Hpy188I TCNGA 4 cut(s) 242, 274, 479, 496
Hpy188III TCNNGA 5 cut(s) 103, 160, 305, 314, 586
Hpy8I GTNNAC 3 cut(s) 222, 363, 535
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 296, 328, 550
HpyCH4III ACNGT 2 cut(s) 198, 622
HpyCH4V TGCA 2 cut(s) 47, 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 393, 437
HpyF3I CTNAG 3 cut(s) 239, 495, 504
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 99, 301, 448, 582
LmnI GCTCC 3 cut(s) 233, 524, 627
Lsp1109I GCAGC 3 cut(s) 152, 427, 472
LweI GCATC 1 cut(s) 34
MaeI CTAG 2 cut(s) 185, 203
MaeIII GTNAC 2 cut(s) 232, 610
MalI GATC 4 cut(s) 101, 303, 450, 584
MboI GATC 4 cut(s) 99, 301, 448, 582
MboII GAAGA 4 cut(s) 53, 120, 402, 592
MhlI GDGCHC 2 cut(s) 119, 184
MluCI AATT 2 cut(s) 66, 569
MmeI TCCRAC 2 cut(s) 297, 314
MnlI CCTC 8 cut(s) 82, 133, 316, 336, 363, 421, 423, 601
MseI TTAA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 3 cut(s) 110, 225, 264
MwoI GCNNNNNNNGC 3 cut(s) 188, 393, 437
NdeII GATC 4 cut(s) 99, 301, 448, 582
NheI GCTAGC 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 124
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 379
PkrI GCNGC 5 cut(s) 88, 142, 190, 442, 487
PshAI GACNNNNGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 5 cut(s) 87, 141, 189, 441, 486
Sau3AI GATC 4 cut(s) 99, 301, 448, 582
SduI GDGCHC 2 cut(s) 119, 184
SetI ASST 8 cut(s) 119, 145, 208, 282, 288, 339, 442, 612
SfaNI GCATC 1 cut(s) 34
Sse9I AATT 2 cut(s) 66, 569
SsiI CCGC 4 cut(s) 84, 87, 95, 188
SspMI CTAG 2 cut(s) 185, 203
SstI GAGCTC 1 cut(s) 119
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 2 cut(s) 198, 622
TaqI TCGA 1 cut(s) 383
TasI AATT 2 cut(s) 66, 569
TatI WGTACW 1 cut(s) 360
TauI GCSGC 2 cut(s) 89, 191
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 466
TseI GCWGC 3 cut(s) 140, 440, 485
TspDTI ATGAA 2 cut(s) 47, 54
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 466
Tth111I GACNNNGTC 1 cut(s) 379
XspI CTAG 2 cut(s) 185, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.