Prupe.1G380800_v2.0.a1

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014678
Physical Location & Seq
Reverse (-)
34331865 .. 34333536
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G380800.1

Sequence Viewer

Length: 600 bp
ATGAAACAGAACGATCCACCGACACGCATAACAATCCCATCAACCACAGCTACACCAACGGTCTTCAGGAAGGACACCTCACCTTCTTCTTCTTCTTCTTCTTCTCCATCATCCAAAGGCAGAAGCTTTTTGGACAAGACTCGCTACAAGTTCTGGGTTTTAGCTGCGATTCTCCTGCTGGCTTTCTGGTCCATGTTCACCGGATCCGTTACCCTCAAGTGGTCCGCCGGCAACTTAACTCGCCTCTCCGACGACTTGGACCTTCCATCCTTCGACGATCTCGATATTCTGGAGGTGGAGGAGAGAGAGAAGGTGGTGAGGCACATGTGGGATTTGTACACCCAGAGCAGCAGAAGTAGCAGCAATCGACTGCCTCGGTTTTGGCAGGAGGCTTTTGAAGCAGCTTACGAGCATTTGAGCAGTGATGTTGCCCCCGTTCGAGACGCTGCCGTTTTGGAGATTGCCAAGATGTCCATCCGCTCCATCATACTCGACCCCTTTCCCCTTCAACTTCATTCAGCGAGCAATAGAGAATTGAAAAAGAGATCCAAGAAAGAAGAGGAAAGCAACAAGGTAGCTGCAGCAGTAGCAAGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

200

Amino Acids

22.39

Weight (kDa)

8.83

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 480
AciI CCGC 2 cut(s) 225, 478
AclWI GGATC 4 cut(s) 8, 198, 211, 540
AcuI CTGAAG 1 cut(s) 49
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 3 cut(s) 398, 509, 538
AluBI AGCT 6 cut(s) 50, 126, 164, 404, 578, 597
AluI AGCT 6 cut(s) 50, 126, 164, 404, 578, 597
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 4 cut(s) 8, 198, 211, 540
ApeKI GCWGC 7 cut(s) 164, 348, 360, 401, 446, 578, 581
AspS9I GGNCC 3 cut(s) 189, 222, 259
AsuHPI GGTGA 3 cut(s) 72, 190, 328
AvaII GGWCC 3 cut(s) 189, 222, 259
BamHI GGATCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 7 cut(s) 151, 360, 372, 413, 433, 565, 593
BccI CCATC 5 cut(s) 46, 115, 274, 482, 491
BceAI ACGGC 1 cut(s) 434
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BcoDI GTCTC 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 7 cut(s) 165, 349, 361, 402, 447, 579, 582
BlsI GCNGC 7 cut(s) 166, 350, 362, 403, 448, 580, 583
Bme18I GGWCC 3 cut(s) 189, 222, 259
BmgT120I GGNCC 3 cut(s) 189, 222, 259
BmiI GGNNCC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 3 cut(s) 110, 266, 474
BseJI GATNNNNATC 1 cut(s) 473
BseLI CCNNNNNNNGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 7 cut(s) 151, 360, 372, 413, 433, 565, 593
BsiSI CCGG 2 cut(s) 201, 228
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 4 cut(s) 13, 203, 277, 545
BspACI CCGC 2 cut(s) 225, 478
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 4 cut(s) 8, 198, 211, 540
BsrBI CCGCTC 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 4 cut(s) 13, 203, 277, 545
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 180, 229, 523
BstF5I GGATG 3 cut(s) 110, 266, 474
BstKTI GATC 4 cut(s) 16, 206, 280, 548
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 4 cut(s) 13, 203, 277, 545
BstMWI GCNNNNNNNGC 3 cut(s) 357, 398, 587
BstNSI RCATGY 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 7 cut(s) 151, 360, 372, 413, 433, 565, 593
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 203, 545
BstYI RGATCY 2 cut(s) 203, 545
BtsCI GGATG 3 cut(s) 110, 266, 474
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 3 cut(s) 180, 229, 523
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 189, 222, 259
CseI GACGC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 193, 325
CviJI RGCY 8 cut(s) 50, 126, 164, 182, 392, 404, 578, 597
CviKI_1 RGCY 8 cut(s) 50, 126, 164, 182, 392, 404, 578, 597
CviQI GTAC 1 cut(s) 337
DpnI GATC 4 cut(s) 15, 205, 279, 547
DpnII GATC 4 cut(s) 13, 203, 277, 545
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
EciI GGCGGA 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 189, 222, 259
Eco57I CTGAAG 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 2 cut(s) 196, 328
FaiI YATR 4 cut(s) 29, 194, 326, 488
FatI CATG 2 cut(s) 192, 324
Fnu4HI GCNGC 7 cut(s) 165, 349, 361, 402, 447, 579, 582
FokI GGATG 3 cut(s) 97, 253, 461
Fsp4HI GCNGC 7 cut(s) 165, 349, 361, 402, 447, 579, 582
GluI GCNGC 7 cut(s) 165, 349, 361, 402, 447, 579, 582
GsuI CTGGAG 1 cut(s) 311
HapII CCGG 2 cut(s) 201, 228
HgaI GACGC 1 cut(s) 452
Hin1II CATG 2 cut(s) 196, 328
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 2 cut(s) 139, 169
HpaII CCGG 2 cut(s) 201, 228
HphI GGTGA 3 cut(s) 72, 190, 328
Hpy166II GTNNAC 2 cut(s) 198, 339
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 4 cut(s) 67, 281, 290, 440
Hpy8I GTNNAC 2 cut(s) 198, 339
Hpy99I CGWCG 2 cut(s) 254, 278
HpyAV CCTTC 6 cut(s) 64, 93, 272, 280, 304, 515
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 398, 587
Hsp92II CATG 2 cut(s) 196, 328
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 13, 203, 277, 545
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 7 cut(s) 151, 360, 372, 413, 433, 565, 593
MaeIII GTNAC 1 cut(s) 208
MalI GATC 4 cut(s) 15, 205, 279, 547
MbiI CCGCTC 1 cut(s) 480
MboI GATC 4 cut(s) 13, 203, 277, 545
MboII GAAGA 8 cut(s) 55, 78, 81, 84, 87, 90, 93, 569
MflI RGATCY 2 cut(s) 203, 545
MluCI AATT 1 cut(s) 533
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 9 cut(s) 88, 224, 254, 286, 292, 312, 382, 384, 553
MroNI GCCGGC 1 cut(s) 227
MseI TTAA 1 cut(s) 236
MspI CCGG 2 cut(s) 201, 228
MwoI GCNNNNNNNGC 3 cut(s) 357, 398, 587
NaeI GCCGGC 1 cut(s) 229
NdeII GATC 4 cut(s) 13, 203, 277, 545
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 2 cut(s) 196, 328
NlaIV GGNNCC 1 cut(s) 205
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 7 cut(s) 166, 350, 362, 403, 448, 580, 583
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 3 cut(s) 189, 222, 259
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 2 cut(s) 203, 545
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 7 cut(s) 165, 349, 361, 402, 447, 579, 582
Sau3AI GATC 4 cut(s) 13, 203, 277, 545
Sau96I GGNCC 3 cut(s) 189, 222, 259
SchI GAGTC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 3 cut(s) 189, 222, 259
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 533
SsiI CCGC 2 cut(s) 225, 478
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 5 cut(s) 273, 282, 367, 439, 492
TasI AATT 1 cut(s) 533
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 427
TseI GCWGC 7 cut(s) 164, 348, 360, 401, 446, 578, 581
TspDTI ATGAA 2 cut(s) 17, 503
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 3 cut(s) 189, 222, 259
XceI RCATGY 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.