RchiOBHm_Chr6g0300851

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014678
Physical Location & Seq
Forward (+)
61547968 .. 61550423
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27019

Sequence Viewer

Length: 606 bp
ATGAAAGACGAAGATGCACCACCGACACTCGTCTCAATTCCCTCACCAACCACCGCCGCAACTCCGCTGATCAGGAAACCGGAGAGCTCACCCTCGTCTTCGTCAAAAACAGCTCGGCTGTTTGTTGTCAAGAATCGCTACAAGTTCTGGGCTCTAGCGGCGATTCTGTTGCTAGCTTTCTGGTCCATGTTCACCGGCTCCGTTACTCTCAGATGGTCTGCCGGCAACTTAACCGGCCTTTCCGACCAGCTCAACCTCCCGACGTACGACGATCTTGATATTCTGGAAGTGGAGGACAGAGAGAAGGTGGTGAGGCACTTGTGGGATTTGTACACGCAGAGGCAGACGGGGTCGAGCAGAAGAAGCACGACCCGACTGCCTCGGTTTTGGCAGGAGGCTTTTGAAGCTGCTTATGATCCTCTGAGCAGTGATGTTCCTGCTGTCAGAAACGCTGCCGTTTCTGAGATTGCTAAGATGTCCATTCGCTCCATCAATGTTGTTGAACCCTTCCCACTCCAATCCAAGGGCGTTACGGAATTGAAAAGGAAGATCAAGAAAACAAAGGAAAACAAGGAGGAAACTCATACAGTAGGGAGCAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

201

Amino Acids

22.57

Weight (kDa)

9.45

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 15 - 169 3.1e-61 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 54, 57, 65, 158
AclWI GGATC 1 cut(s) 410
AfaI GTAC 2 cut(s) 266, 332
AfiI CCNNNNNNNGG 1 cut(s) 523
AgsI TTSAA 3 cut(s) 404, 503, 541
AluBI AGCT 5 cut(s) 87, 113, 176, 250, 407
AluI AGCT 5 cut(s) 87, 113, 176, 250, 407
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 407, 452
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 4 cut(s) 36, 81, 184, 322
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 183
BanII GRGCYC 2 cut(s) 89, 154
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 394, 439
BccI CCATC 2 cut(s) 207, 497
BceAI ACGGC 1 cut(s) 440
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 358, 392
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 155, 173
BisI GCNGC 4 cut(s) 57, 159, 408, 453
BlsI GCNGC 4 cut(s) 58, 160, 409, 454
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 380, 522
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse118I RCCGGY 3 cut(s) 194, 221, 233
BseDI CCNNGG 2 cut(s) 380, 522
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 3 cut(s) 223, 413, 453
BseXI GCAGC 2 cut(s) 394, 439
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 4 cut(s) 80, 195, 222, 234
BsiWI CGTACG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 89, 154
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 69, 271, 415, 549
BspACI CCGC 4 cut(s) 54, 57, 65, 158
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 222, 414, 454
BspLI GGNNCC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 410
BsrFI RCCGGY 3 cut(s) 194, 221, 233
BsrGI TGTACA 1 cut(s) 330
BssAI RCCGGY 3 cut(s) 194, 221, 233
BssECI CCNNGG 2 cut(s) 380, 522
BssMI GATC 4 cut(s) 69, 271, 415, 549
BssT1I CCWWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 174, 223
BstDEI CTNAG 4 cut(s) 209, 422, 462, 471
BstKTI GATC 4 cut(s) 72, 274, 418, 552
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 4 cut(s) 69, 271, 415, 549
BstMWI GCNNNNNNNGC 3 cut(s) 158, 363, 404
BstPAI GACNNNNGTC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 394, 439
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 174, 223
Cfr10I RCCGGY 3 cut(s) 194, 221, 233
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 265, 331
CviAII CATG 1 cut(s) 187
CviQI GTAC 2 cut(s) 265, 331
DdeI CTNAG 4 cut(s) 209, 422, 462, 471
DpnI GATC 4 cut(s) 71, 273, 417, 551
DpnII GATC 4 cut(s) 69, 271, 415, 549
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 2 cut(s) 89, 154
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 2 cut(s) 89, 154
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 188, 414, 585, 604
FatI CATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 57, 159, 408, 453
FriOI GRGCYC 2 cut(s) 89, 154
Fsp4HI GCNGC 4 cut(s) 57, 159, 408, 453
FspBI CTAG 2 cut(s) 155, 173
GluI GCNGC 4 cut(s) 57, 159, 408, 453
HaeIII GGCC 1 cut(s) 237
HapII CCGG 4 cut(s) 80, 195, 222, 234
Hin1II CATG 1 cut(s) 190
HinfI GANTC 2 cut(s) 133, 163
HpaII CCGG 4 cut(s) 80, 195, 222, 234
HphI GGTGA 4 cut(s) 36, 81, 184, 322
Hpy166II GTNNAC 2 cut(s) 192, 333
Hpy188I TCNGA 5 cut(s) 212, 244, 423, 446, 463
Hpy188III TCNNGA 6 cut(s) 73, 130, 259, 275, 284, 553
Hpy8I GTNNAC 2 cut(s) 192, 333
Hpy99I CGWCG 2 cut(s) 265, 272
HpyAV CCTTC 2 cut(s) 298, 517
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 363, 404
HpyF3I CTNAG 4 cut(s) 209, 422, 462, 471
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 1 cut(s) 190
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 271, 415, 549
LmnI GCTCC 3 cut(s) 203, 491, 594
Lsp1109I GCAGC 2 cut(s) 394, 439
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 155, 173
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 202, 529
MalI GATC 4 cut(s) 71, 273, 417, 551
MboI GATC 4 cut(s) 69, 271, 415, 549
MboII GAAGA 4 cut(s) 23, 90, 372, 559
MhlI GDGCHC 2 cut(s) 89, 154
MluCI AATT 2 cut(s) 36, 536
MmeI TCCRAC 1 cut(s) 267
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 4 cut(s) 80, 195, 222, 234
MwoI GCNNNNNNNGC 3 cut(s) 158, 363, 404
NaeI GCCGGC 1 cut(s) 223
NdeII GATC 4 cut(s) 69, 271, 415, 549
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 133, 163
Pfl23II CGTACG 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 349
PkrI GCNGC 4 cut(s) 58, 160, 409, 454
PshAI GACNNNNGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 89
PspLI CGTACG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 183
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 2 cut(s) 266, 332
RsaNI GTAC 2 cut(s) 265, 331
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 4 cut(s) 57, 159, 408, 453
Sau3AI GATC 4 cut(s) 69, 271, 415, 549
Sau96I GGNCC 1 cut(s) 183
SduI GDGCHC 2 cut(s) 89, 154
SetI ASST 8 cut(s) 89, 115, 178, 252, 258, 266, 309, 409
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 183
Sse9I AATT 2 cut(s) 36, 536
SsiI CCGC 4 cut(s) 54, 57, 65, 158
SspMI CTAG 2 cut(s) 155, 173
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 353
TasI AATT 2 cut(s) 36, 536
TatI WGTACW 1 cut(s) 330
TauI GCSGC 2 cut(s) 59, 161
TfiI GAWTC 2 cut(s) 133, 163
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 433
TseI GCWGC 2 cut(s) 407, 452
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 190, 548
TspRI CASTG 1 cut(s) 433
Tth111I GACNNNGTC 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 183
XspI CTAG 2 cut(s) 155, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.