Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014678

Physical Location & Seq

Genomic Coordinates Forward (+)

1649572 .. 1651034

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAGGACAACGATTCACCGACACTGATAACAATCCCATCATCAACGGTGATCAGGAAGGACACCTCGTCGTCGAAAGCCAGAGGCTTTCTCGACAAGAATCGCTACAAGTTCTCGGTTTTAGCTGCGATTCTCCTCCTCGCTTTCTGGTCAATGTTCACGGGGTGCGTCACCCTCAAATGGTCCGCCGGCAACTTATCCCACCTCTCCGACGACCTCGATATCCCGACCTTCGACGATCTCGACATTCTAGAGGTGGAGGAGAGAGAGAAGGTAGTGAGGCACATGTGGGATTTGTACACGCAGAGCAGCAGCAGCAGCAGCACGAGTCGACTGCCGCTGTTTTGGCAGGAGGCTTTCGAGGCGGCGTACGAGCATTTGAGCAGCGACGTTGCTGCCGTTCGAGACGCCGCCGTTTCGGAGATTGCCAAGATGTCCATCCGCTCCATCGTTCTTGATCCCATCCCACTTCAATCAACGAACATAAGAGAAATGCAGAAGAAGAGATCCAAGAAAGCGGAGGAAGGCAAGAAGGTGACTACATTACGAAGTAGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1195

Protein Analysis

187

Amino Acids

20.91

Weight (kDa)

6.84

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014678)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39930 FvH4_2g39930
malus_domestica	MD08G1034200.v1.1 MD15G1031100.v1.1
prunus_persica	Prupe.1G380800_v2.0.a1 Prupe.6G064600_v2.0.a1
pyrus_communis	pycom08g02730 pycom15g02700
rosa_chinensis	RchiOBHm_Chr6g0300851
rosa_laevigata	RLG00000011296
rosa_multiflora	Rmu_sc0008947.1_g000007
rosa_roxburghii	Rroxscaffold_7G00167370
rosa_rugosa	Rorug06G0299400
rosa_samantha	Rh6AG412500 Rh6BG419700 Rh6CG427200 Rh6DG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	331
AciI	CCGC	6 cut(s)	186, 338, 365, 411, 442, 518
AclWI	GGATC	2 cut(s)	452, 501
AcyI	GRCGYC	1 cut(s)	408
AdeI	CACNNNGTG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	299, 371
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	473
AhdI	GACNNNNNGTC	1 cut(s)	67
AluBI	AGCT	2 cut(s)	125, 558
AluI	AGCT	2 cut(s)	125, 558
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	452, 501
ApeKI	GCWGC	8 cut(s)	125, 309, 312, 315, 318, 321, 384, 395
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	4 cut(s)	9, 61, 163, 547
AvaII	GGWCC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	325
BbvI	GCAGC	8 cut(s)	112, 321, 324, 327, 330, 333, 382, 396
BccI	CCATC	4 cut(s)	46, 446, 455, 470
BceAI	ACGGC	2 cut(s)	383, 398
BcgI	CGANNNNNNTGC	4 cut(s)	316, 350, 377, 411
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	251, 559
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BsaBI	GATNNNNATC	2 cut(s)	32, 437
BsaHI	GRCGYC	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	188
Bse8I	GATNNNNATC	2 cut(s)	32, 437
BseGI	GGATG	2 cut(s)	438, 462
BseJI	GATNNNNATC	2 cut(s)	32, 437
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseRI	GAGGAG	3 cut(s)	125, 128, 275
BseXI	GCAGC	8 cut(s)	112, 321, 324, 327, 330, 333, 382, 396
BsiSI	CCGG	1 cut(s)	189
BsiWI	CGTACG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	4 cut(s)	51, 238, 457, 506
BspACI	CCGC	6 cut(s)	186, 338, 365, 411, 442, 518
BspPI	GGATC	2 cut(s)	452, 501
BsrBI	CCGCTC	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	4 cut(s)	51, 238, 457, 506
BssNI	GRCGYC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	438, 462
BstKTI	GATC	4 cut(s)	54, 241, 460, 509
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	4 cut(s)	51, 238, 457, 506
BstMWI	GCNNNNNNNGC	5 cut(s)	315, 318, 321, 346, 362
BstNSI	RCATGY	1 cut(s)	289
BstV1I	GCAGC	8 cut(s)	112, 321, 324, 327, 330, 333, 382, 396
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	438, 462
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	2 cut(s)	157, 416
Csp6I	GTAC	2 cut(s)	298, 370
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	80, 87, 125, 356, 558
CviKI_1	RGCY	5 cut(s)	80, 87, 125, 356, 558
CviQI	GTAC	2 cut(s)	298, 370
DpnI	GATC	4 cut(s)	53, 240, 459, 508
DpnII	GATC	4 cut(s)	51, 238, 457, 506
DraIII	CACNNNGTG	1 cut(s)	165
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	497
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	1 cut(s)	289
FaiI	YATR	2 cut(s)	287, 485
FatI	CATG	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	331
FokI	GGATG	2 cut(s)	425, 449
FspBI	CTAG	2 cut(s)	251, 559
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	2 cut(s)	157, 416
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	4 cut(s)	14, 100, 130, 328
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	4 cut(s)	9, 61, 163, 547
Hpy166II	GTNNAC	3 cut(s)	159, 300, 332
Hpy188I	TCNGA	2 cut(s)	211, 421
Hpy188III	TCNNGA	7 cut(s)	55, 92, 226, 242, 251, 404, 455
Hpy8I	GTNNAC	3 cut(s)	159, 300, 332
Hpy99I	CGWCG	5 cut(s)	73, 76, 215, 239, 392
HpyAV	CCTTC	5 cut(s)	52, 241, 265, 518, 526
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	315, 318, 321, 346, 362
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	289
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	51, 238, 457, 506
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	5 cut(s)	40, 94, 133, 202, 335
Lsp1109I	GCAGC	8 cut(s)	112, 321, 324, 327, 330, 333, 382, 396
MaeI	CTAG	2 cut(s)	251, 559
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	169, 535
MalI	GATC	4 cut(s)	53, 240, 459, 508
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	4 cut(s)	51, 238, 457, 506
MboII	GAAGA	2 cut(s)	511, 514
MflI	RGATCY	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	315, 318, 321, 346, 362
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	4 cut(s)	51, 238, 457, 506
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	169, 535
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 396
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	14, 100, 130
Pfl23II	CGTACG	1 cut(s)	369
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PscI	ACATGT	1 cut(s)	285
PspLI	CGTACG	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	2 cut(s)	299, 371
RsaNI	GTAC	2 cut(s)	298, 370
SalI	GTCGAC	1 cut(s)	330
Sau3AI	GATC	4 cut(s)	51, 238, 457, 506
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	183
SsiI	CCGC	6 cut(s)	186, 338, 365, 411, 442, 518
SspMI	CTAG	2 cut(s)	251, 559
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	8 cut(s)	74, 93, 219, 234, 243, 331, 360, 403
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	3 cut(s)	340, 368, 413
TfiI	GAWTC	3 cut(s)	14, 100, 130
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	169, 535
TseI	GCWGC	8 cut(s)	125, 309, 312, 315, 318, 321, 384, 395
Tsp45I	GTSAC	2 cut(s)	169, 535
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	331
XspI	CTAG	2 cut(s)	251, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.