Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014678

Physical Location & Seq

Genomic Coordinates Forward (+)

4462974 .. 4464048

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAACAGAACGATCCACCGACACTCATAACAATCCCATCAACCACAGCCACACCATCGGTCTTCAGGAAGGACACCTCACCTTCTTCTTCTTCTTCTCCATCATCCAAAGGCAGAAGCTTTTTGGACAAGACTCGCTACAAGTTCTGGGTTTTAGCTGCGATTCTCCTGCTGGCTTTCTGGTCCATGTTCACCGGATCCGTTACCCTCAAGTGGTCCGCCGGCAACTTAACTCGCCTCTCCGACGACTTAGACCTTCCATCCTTCGACGATCTCGATATTCTGGAGGTGGAGGAGAGAGAGAAGGTGGTGAGGCACATGTGGGATTTGTACACCCAGAGCAGCAGAAGTAGCAGCAATCGATTGCCTCGGTTTTGGCAGGAGGCTTTTGAAGCAGCTTACGAGCATTTGAGCAGTGATGTTGCCCCTGTTCGAGACGCTGCCGTTTTGGAGATTGCCAAGATGCCTCTTTCTTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1195

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

5.68

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014678)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39930 FvH4_2g39930
malus_domestica	MD08G1034200.v1.1 MD15G1031100.v1.1
prunus_persica	Prupe.1G380800_v2.0.a1 Prupe.6G064600_v2.0.a1
pyrus_communis	pycom08g02730 pycom15g02700
rosa_chinensis	RchiOBHm_Chr6g0300851
rosa_laevigata	RLG00000011296
rosa_multiflora	Rmu_sc0008947.1_g000007
rosa_roxburghii	Rroxscaffold_7G00167370
rosa_rugosa	Rorug06G0299400
rosa_samantha	Rh6AG412500 Rh6BG419700 Rh6CG427200 Rh6DG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	3 cut(s)	8, 192, 205
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	392
AluBI	AGCT	3 cut(s)	120, 158, 398
AluI	AGCT	3 cut(s)	120, 158, 398
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	3 cut(s)	8, 192, 205
ApeKI	GCWGC	5 cut(s)	158, 342, 354, 395, 440
AspS9I	GGNCC	2 cut(s)	183, 216
AsuHPI	GGTGA	3 cut(s)	72, 184, 322
AvaII	GGWCC	2 cut(s)	183, 216
BamHI	GGATCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	5 cut(s)	145, 354, 366, 407, 427
BccI	CCATC	4 cut(s)	46, 64, 109, 268
BceAI	ACGGC	1 cut(s)	428
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BcoDI	GTCTC	1 cut(s)	429
BisI	GCNGC	5 cut(s)	159, 343, 355, 396, 441
BlsI	GCNGC	5 cut(s)	160, 344, 356, 397, 442
Bme18I	GGWCC	2 cut(s)	183, 216
BmgT120I	GGNCC	2 cut(s)	183, 216
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse118I	RCCGGY	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	2 cut(s)	104, 260
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	5 cut(s)	145, 354, 366, 407, 427
BshVI	ATCGAT	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	195, 222
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	429
BsmBI	CGTCTC	1 cut(s)	429
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	13, 197, 271
BspACI	CCGC	1 cut(s)	219
BspDI	ATCGAT	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	3 cut(s)	8, 192, 205
BsrFI	RCCGGY	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	3 cut(s)	13, 197, 271
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	174, 223
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	104, 260
BstKTI	GATC	3 cut(s)	16, 200, 274
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	13, 197, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 392
BstNSI	RCATGY	1 cut(s)	322
BstV1I	GCAGC	5 cut(s)	145, 354, 366, 407, 427
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	104, 260
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	174, 223
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	183, 216
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	187, 319
CviJI	RGCY	6 cut(s)	50, 120, 158, 176, 386, 398
CviKI_1	RGCY	6 cut(s)	50, 120, 158, 176, 386, 398
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	3 cut(s)	15, 199, 273
DpnII	GATC	3 cut(s)	13, 197, 271
EciI	GGCGGA	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	183, 216
Eco57I	CTGAAG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	2 cut(s)	190, 322
FaiI	YATR	4 cut(s)	29, 188, 320, 478
FatI	CATG	2 cut(s)	186, 318
Fnu4HI	GCNGC	5 cut(s)	159, 343, 355, 396, 441
FokI	GGATG	2 cut(s)	91, 247
Fsp4HI	GCNGC	5 cut(s)	159, 343, 355, 396, 441
GluI	GCNGC	5 cut(s)	159, 343, 355, 396, 441
GsuI	CTGGAG	1 cut(s)	305
HapII	CCGG	2 cut(s)	195, 222
HgaI	GACGC	1 cut(s)	446
Hin1II	CATG	2 cut(s)	190, 322
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	2 cut(s)	133, 163
HpaII	CCGG	2 cut(s)	195, 222
HphI	GGTGA	3 cut(s)	72, 184, 322
Hpy166II	GTNNAC	2 cut(s)	192, 333
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	4 cut(s)	67, 275, 284, 434
Hpy8I	GTNNAC	2 cut(s)	192, 333
Hpy99I	CGWCG	2 cut(s)	248, 272
HpyAV	CCTTC	5 cut(s)	64, 93, 266, 274, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 392
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	190, 322
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	13, 197, 271
Lsp1109I	GCAGC	5 cut(s)	145, 354, 366, 407, 427
LweI	GCATC	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	15, 199, 273
MboI	GATC	3 cut(s)	13, 197, 271
MboII	GAAGA	5 cut(s)	55, 78, 81, 84, 87
MflI	RGATCY	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	88, 218, 248, 280, 286, 306, 376, 378, 477
MroNI	GCCGGC	1 cut(s)	221
MseI	TTAA	1 cut(s)	230
MspI	CCGG	2 cut(s)	195, 222
MwoI	GCNNNNNNNGC	2 cut(s)	351, 392
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	3 cut(s)	13, 197, 271
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	190, 322
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	322
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	160, 344, 356, 397, 442
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PscI	ACATGT	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	183, 216
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	5 cut(s)	159, 343, 355, 396, 441
Sau3AI	GATC	3 cut(s)	13, 197, 271
Sau96I	GGNCC	2 cut(s)	183, 216
SchI	GAGTC	1 cut(s)	127
SetI	ASST	8 cut(s)	80, 85, 122, 160, 258, 291, 309, 400
SfaNI	GCATC	1 cut(s)	453
SinI	GGWCC	2 cut(s)	183, 216
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	1 cut(s)	219
TaqI	TCGA	4 cut(s)	267, 276, 361, 433
TaqII	GACCGA	1 cut(s)	49
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	5 cut(s)	158, 342, 354, 395, 440
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	183, 216
XceI	RCATGY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.