Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

463048 .. 468305

Gene Structure 5258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2739 bp

ATGTCCGGCAACAGCCCCGTCGTCGATTGCCAGCGCGGCAGCGGCAGCGACAGCGCGACGGTGGTGGCCACCGCTGCGCGTCTGTCGTCCAAGAGAAAGCTGGACGACTATGGCGGCCCGACGTACTCAGACGACGAGGACGACGCCGTCGTCTCTGACCTAGTCCACGTCAGAATGAGGAAGGACGAGCCCAACGCCGTCGATTCGTCCTCCAACGGCGCCGCGGCGGGGGCGACGCAGCCTCAGTCCTCCCACCTCAATTCCAATTCCTCGCGAGTCCCCGACGTCCGATCGGGCGCCGCCTCGCCCGCCGAGTCCACTCGCCACGAGTTGACTCGGTCCCGGCCGATGCTCCAATTCTTCATCAAAACGATCTCCGGCGGCAACACTCTGGTGTTCCAGGCACACGCGCACGACTCCGTGCAGGCTCTCCACGAGCGCATTGAAGCGATCACCCGCATTCCGGTGACGGAGCAGAGGCTAATTTACAGAGGGAAGCAGCTGCAGTTGGAACAGTCCCTGGCGCAGTGCTCAATCCAAAACGACTGCAGCTTGCAGCTCGTCGGCCGCCTCCGGAGCACTCACCATCCCCAGGCCTGGCAGGTCCTGGAGGACCTGGTCTCGGTTGCCTTTCGGCTCTGCCGCAGCGAAAAGGTGCACGAGCCGTTGAAGTACATCAAGAACCGCCTCAGCCAGTACTTGACAATGGCTCAGAAGGAGAAGACGGATGAGTCTGGAGTTAGCCATATGCGGGTGTTCATACCGTCCTCGGCGCCATTGTCATTGTTCATGCTCTACAATTCGCCTGTTGCAGGTAACAAAGACATTGCTGAAGAGTCCATTAAGTATTTCCTGAACTCGTATCCTACATTGTTGCCCAAAAACTTGCATATTCACTGCTCACCGATAGTGTTAGAGTTCTGTAAGTTCCTTAGAAGAGTAGGGGTGGAGGACCCTCTGTACATCTTGTGCAGGAGTGCTCTAGGTTCGTTTTGGGAGAATGCCGGGGGTTTGCAGGAGTCGGAGTGTGTTGATCAGTATGTTAGGTTGAAGGAGATTTACCCGTTTCTCAGGGAGGTGGCCATTAGTTTGTCTAAGGATTTGGTGCTGAGTATGGAGTCGCCTGGGAATCTTAGGCCGTTGTTGGATGATGATGTACGTGATTTCAAGGCTTTCTTGCTCCCCGTGCGAACTGCAATTTCCAAAGAAGTGTATCGTAAGGGTCCCATTTGTGCATCCTCGAAAGAACAGGCTGCTAAGCACCCAGTTTTTGGGGAAGAGATTGAGCTTCTTCGTAATATACTTACTGATTTGCTGAATAGAATGGCTGAGTGCCTTACCAAAGTGGTAGAGTACTTGGCTGGGAAAGCAAAGGGGGACAGTGATATTGTTCATACCAGATGGTCTCAGTATCTTGCTGTTTTGAAGGAACTACATGGGATTTGTAAACTCTATCAGGGTGGGGAAGAACAATTTTGGACGACTCTGAGGCTTAGAAAGACTGCGATATGTGCACTAGTTGTGAAATATGCTAAGCGAAGTGACGATCATCAGTGGCTTCTCGAGCACAAAGATGTACTTGATTTCGAGTCTCGAAGGCATTTGGCGATGATGATGTTCCCTGATGTTAAAGAAGACTATGAGGAGTTACATGAGATGCTGATTGATAGGTCTCAGTTATTGTCAGAATCATTTGAATACATAGGACGTGCAGATCCTGATTCACTGCATGCTGGATTATTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGGGAATGGTTCTTTTTGGTATGCCAGGAGATATTTAATCCACAAAATGCACTCTTTGTGGCATGCCCTAATGACCGGAGACGATTCTATCCTAATCCAGCATCTAAGGTGGATCCTCTGCACCTTGAGTATTTCACCTTTGCTGGCCGGGTTATTGCTTTAGCTTTAATGCATAAAGTGCAAGTGGGCATAGTCTTTGATCGTATTTTTTTCCAACAGTTGGCTGGAACTTTACCATCTTTGGAAGACATACGGGATGCTGATCCTTTCTTGTATAATAGTTGCAAGCAGATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTAGGATTGACGTTTGTTAGAGAAGTGGAGGAATTGGGATGCAGGAAAACTGTGGAGCTTCGCGCTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAATCTTCTTATCAAGCATCGGTTTGTCATATCTATTACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTCTCCAACTCAGTGTTCCAGACTTTCTTTTTCCGAAGTTTAGAGCTAGAAGATCTTGATTGGATGCTACATGGAAGCGAAAGTGCTGTTAGTGTTGAAGATTGGAAGGCACATACCGAGTACAATGGCTACAAAGAGACTGATCCTCAAATATATTGGTTCTGGAAGATTGTCGGGGAAATGTCTGCAGAGCAGAGAAAAGTTCTTCTCTTCTTTTGGACGTCTGTGAAGTACCTTCCGGTTGAGGGGTTCCGTGGTTTGGCTTCACGGCTGTACATCTACAAGTCCTCAGAGCCTCCTAGTCGACTGCCTTCATCTCATACATGCTTTTACCGGCTGTGCTTCCCACCTTATCCATCTATGTCTGTCATGAGAGGTCGCCTCAACATCATCACCCAAGAACATGTTGGCAGCAGCTTTGGGACATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

913

Amino Acids

103.82

Weight (kDa)

6.19

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	121 - 192	8.3e-16	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	146, 149, 730
AatII	GACGTC	2 cut(s)	288, 2531
Acc36I	ACCTGC	2 cut(s)	592, 803
AccB1I	GGYRCC	3 cut(s)	218, 296, 772
AccB7I	CCANNNNNTGG	2 cut(s)	1271, 2005
AccI	GTMKAC	1 cut(s)	2611
AccII	CGCG	7 cut(s)	36, 56, 79, 224, 274, 410, 2178
AccIII	TCCGGA	1 cut(s)	573
AclWI	GGATC	7 cut(s)	1709, 1892, 1905, 2042, 2084, 2097, 2444
AcoI	YGGCCR	5 cut(s)	66, 344, 565, 1080, 1930
AcsI	RAATTY	1 cut(s)	1748
AcuI	CTGAAG	1 cut(s)	852
AcyI	GRCGYC	6 cut(s)	144, 219, 285, 297, 773, 2528
AflIII	ACRYGT	1 cut(s)	2710
AgsI	TTSAA	8 cut(s)	446, 670, 1051, 1168, 1426, 1697, 1753, 2405
AhlI	ACTAGT	1 cut(s)	1516
AjiI	CACGTC	2 cut(s)	169, 1709
AjnI	CCWGG	9 cut(s)	399, 519, 591, 596, 606, 615, 1123, 1774, 1809
AjuI	GAANNNNNNNTTGG	2 cut(s)	2306, 2338
AleI	CACNNNNGTG	1 cut(s)	392
Alw21I	GWGCWC	6 cut(s)	533, 581, 660, 982, 1516, 1569
Alw26I	GTCTC	7 cut(s)	157, 625, 1410, 1596, 1677, 1858, 2438
Alw44I	GTGCAC	2 cut(s)	656, 1512
AlwI	GGATC	7 cut(s)	1709, 1892, 1905, 2042, 2084, 2097, 2444
AlwNI	CAGNNNCTG	4 cut(s)	520, 607, 1718, 2080
Ama87I	CYCGRG	1 cut(s)	1562
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	8 cut(s)	66, 115, 344, 565, 594, 1080, 1136, 1930
ApaLI	GTGCAC	2 cut(s)	656, 1512
ApoI	RAATTY	1 cut(s)	1748
AspS9I	GGNCC	7 cut(s)	116, 339, 604, 613, 952, 1223, 1772
AsuC2I	CCSGG	3 cut(s)	343, 1006, 1934
AsuHPI	GGTGA	7 cut(s)	445, 478, 575, 894, 1912, 2312, 2692
AvaI	CYCGRG	1 cut(s)	1562
AvaII	GGWCC	6 cut(s)	339, 604, 613, 952, 1223, 1772
BaeGI	GKGCMC	2 cut(s)	660, 1516
BalI	TGGCCA	2 cut(s)	68, 1082
BamHI	GGATCC	2 cut(s)	1897, 2089
BanI	GGYRCC	3 cut(s)	218, 296, 772
BanII	GRGCYC	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	1043, 1075
BauI	CACGAG	3 cut(s)	326, 434, 659
BbsI	GAAGAC	3 cut(s)	728, 1641, 2037
Bbv12I	GWGCWC	6 cut(s)	533, 581, 660, 982, 1516, 1569
BbvCI	CCTCAGC	1 cut(s)	689
BccI	CCATC	4 cut(s)	594, 1395, 2029, 2671
BceAI	ACGGC	6 cut(s)	131, 182, 232, 649, 1123, 2591
BciT130I	CCWGG	9 cut(s)	401, 521, 593, 598, 608, 617, 1125, 1776, 1811
BciVI	GTATCC	1 cut(s)	873
BclI	TGATCA	1 cut(s)	1033
BcnI	CCSGG	3 cut(s)	343, 1006, 1934
BcoDI	GTCTC	7 cut(s)	157, 625, 1410, 1596, 1677, 1858, 2438
BcuI	ACTAGT	1 cut(s)	1516
BfaI	CTAG	5 cut(s)	161, 983, 1517, 2354, 2607
BfmI	CTRYAG	4 cut(s)	503, 547, 1767, 2493
BfoI	RGCGCY	3 cut(s)	222, 300, 776
BfuAI	ACCTGC	2 cut(s)	592, 803
BfuI	GTATCC	1 cut(s)	873
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	1 cut(s)	2359
BlpI	GCTNAGC	2 cut(s)	1257, 1533
BmcAI	AGTACT	2 cut(s)	698, 1355
Bme18I	GGWCC	6 cut(s)	339, 604, 613, 952, 1223, 1772
BmeT110I	CYCGRG	1 cut(s)	1562
BmgBI	CACGTC	2 cut(s)	169, 1709
BmgT120I	GGNCC	7 cut(s)	116, 339, 604, 613, 952, 1223, 1772
BmrI	ACTGGG	1 cut(s)	1259
BmsI	GCATC	9 cut(s)	339, 1244, 1647, 1895, 2032, 2101, 2144, 2254, 2361
BmuI	ACTGGG	1 cut(s)	1259
BpiI	GAAGAC	3 cut(s)	728, 1641, 2037
BplI	GAGNNNNNCTC	2 cut(s)	2673, 2705
BpmI	CTGGAG	2 cut(s)	629, 756
Bpu10I	CCTNAGC	1 cut(s)	689
Bpu1102I	GCTNAGC	2 cut(s)	1257, 1533
BpuEI	CTTGAG	1 cut(s)	1931
BpuMI	CCSGG	3 cut(s)	343, 1006, 1934
BsaAI	YACGTR	1 cut(s)	1160
BsaBI	GATNNNNATC	1 cut(s)	2046
BsaHI	GRCGYC	6 cut(s)	144, 219, 285, 297, 773, 2528
BsaI	GGTCTC	3 cut(s)	625, 1410, 1677
BsaJI	CCNNGG	7 cut(s)	222, 519, 591, 768, 1005, 1124, 2560
BsaWI	WCCGGW	4 cut(s)	463, 573, 1860, 2545
BsaXI	ACNNNNNCTCC	2 cut(s)	1010, 1040
Bse118I	RCCGGY	1 cut(s)	2640
Bse1I	ACTGG	2 cut(s)	694, 1265
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	2046
BseAI	TCCGGA	1 cut(s)	573
BseBI	CCWGG	9 cut(s)	401, 521, 593, 598, 608, 617, 1125, 1776, 1811
BseDI	CCNNGG	7 cut(s)	222, 519, 591, 768, 1005, 1124, 2560
BseGI	GGATG	7 cut(s)	586, 733, 1153, 1235, 2047, 2159, 2376
BseJI	GATNNNNATC	1 cut(s)	2046
BseMI	GCAATG	1 cut(s)	825
BseNI	ACTGG	2 cut(s)	694, 1265
BseRI	GAGGAG	1 cut(s)	1658
BseSI	GKGCMC	2 cut(s)	660, 1516
BseX3I	CGGCCG	2 cut(s)	344, 565
BseYI	CCCAGC	1 cut(s)	1361
BsgI	GTGCAG	4 cut(s)	443, 991, 1731, 1889
Bsh1236I	CGCG	7 cut(s)	36, 56, 79, 224, 274, 410, 2178
Bsh1285I	CGRYCG	3 cut(s)	293, 347, 568
BshFI	GGCC	8 cut(s)	68, 117, 346, 567, 596, 1082, 1138, 1932
BshNI	GGYRCC	3 cut(s)	218, 296, 772
BsiEI	CGRYCG	3 cut(s)	293, 347, 568
BsiHKAI	GWGCWC	6 cut(s)	533, 581, 660, 982, 1516, 1569
BsiHKCI	CYCGRG	1 cut(s)	1562
BslFI	GGGAC	5 cut(s)	263, 325, 502, 1209, 1391
BsmAI	GTCTC	7 cut(s)	157, 625, 1410, 1596, 1677, 1858, 2438
BsmBI	CGTCTC	2 cut(s)	157, 1858
BsmFI	GGGAC	5 cut(s)	263, 325, 502, 1209, 1391
BsmI	GAATGC	2 cut(s)	459, 1006
BsnI	GGCC	8 cut(s)	68, 117, 346, 567, 596, 1082, 1138, 1932
Bso31I	GGTCTC	3 cut(s)	625, 1410, 1677
BsoBI	CYCGRG	1 cut(s)	1562
Bsp1286I	GDGCHC	7 cut(s)	192, 533, 581, 660, 982, 1516, 1569
Bsp13I	TCCGGA	1 cut(s)	573
Bsp1407I	TGTACA	2 cut(s)	960, 2580
Bsp1720I	GCTNAGC	2 cut(s)	1257, 1533
Bsp68I	TCGCGA	1 cut(s)	274
BspANI	GGCC	8 cut(s)	68, 117, 346, 567, 596, 1082, 1138, 1932
BspEI	TCCGGA	1 cut(s)	573
BspFNI	CGCG	7 cut(s)	36, 56, 79, 224, 274, 410, 2178
BspHI	TCATGA	1 cut(s)	2676
BspMAI	CTGCAG	3 cut(s)	507, 551, 2497
BspMI	ACCTGC	2 cut(s)	592, 803
BspPI	GGATC	7 cut(s)	1709, 1892, 1905, 2042, 2084, 2097, 2444
BspT107I	GGYRCC	3 cut(s)	218, 296, 772
BspTNI	GGTCTC	3 cut(s)	625, 1410, 1677
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	2640
BsrGI	TGTACA	2 cut(s)	960, 2580
BsrI	ACTGG	2 cut(s)	694, 1265
BssAI	RCCGGY	1 cut(s)	2640
BssECI	CCNNGG	7 cut(s)	222, 519, 591, 768, 1005, 1124, 2560
BssNI	GRCGYC	6 cut(s)	144, 219, 285, 297, 773, 2528
BssSI	CACGAG	3 cut(s)	326, 434, 659
Bst2BI	CACGAG	3 cut(s)	326, 434, 659
Bst2UI	CCWGG	9 cut(s)	401, 521, 593, 598, 608, 617, 1125, 1776, 1811
Bst4CI	ACNGT	6 cut(s)	61, 516, 765, 1382, 2004, 2167
Bst6I	CTCTTC	4 cut(s)	828, 931, 1272, 2522
BstACI	GRCGYC	6 cut(s)	144, 219, 285, 297, 773, 2528
BstAPI	GCANNNNNTGC	1 cut(s)	1963
BstAUI	TGTACA	2 cut(s)	960, 2580
BstBAI	YACGTR	1 cut(s)	1160
BstC8I	GCNNGC	8 cut(s)	32, 309, 426, 554, 1731, 1849, 1930, 2072
BstDSI	CCRYGG	2 cut(s)	222, 2560
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	7 cut(s)	586, 733, 1153, 1235, 2047, 2159, 2376
BstFNI	CGCG	7 cut(s)	36, 56, 79, 224, 274, 410, 2178
BstH2I	RGCGCY	3 cut(s)	222, 300, 776
BstMAI	GTCTC	7 cut(s)	157, 625, 1410, 1596, 1677, 1858, 2438
BstMCI	CGRYCG	3 cut(s)	293, 347, 568
BstNI	CCWGG	9 cut(s)	401, 521, 593, 598, 608, 617, 1125, 1776, 1811
BstNSI	RCATGY	4 cut(s)	1733, 1851, 2634, 2714
BstSFI	CTRYAG	4 cut(s)	503, 547, 1767, 2493
BstSLI	GKGCMC	2 cut(s)	660, 1516
BstUI	CGCG	7 cut(s)	36, 56, 79, 224, 274, 410, 2178
BstV2I	GAAGAC	3 cut(s)	728, 1641, 2037
BstX2I	RGATCY	4 cut(s)	1714, 1897, 2089, 2359
BstYI	RGATCY	4 cut(s)	1714, 1897, 2089, 2359
BstZI	CGGCCG	2 cut(s)	344, 565
BsuI	GTATCC	1 cut(s)	873
BsuRI	GGCC	8 cut(s)	68, 117, 346, 567, 596, 1082, 1138, 1932
BtgI	CCRYGG	2 cut(s)	222, 2560
BtgZI	GCGATG	1 cut(s)	1622
BtrI	CACGTC	2 cut(s)	169, 1709
BtsCI	GGATG	7 cut(s)	586, 733, 1153, 1235, 2047, 2159, 2376
BtsI	GCAGTG	3 cut(s)	533, 895, 1724
BtsIMutI	CAGTG	6 cut(s)	533, 895, 1387, 1559, 1724, 2325
BtuMI	TCGCGA	1 cut(s)	274
BveI	ACCTGC	2 cut(s)	592, 803
Cac8I	GCNNGC	8 cut(s)	32, 309, 426, 554, 1731, 1849, 1930, 2072
CaiI	CAGNNNCTG	4 cut(s)	520, 607, 1718, 2080
CciI	TCATGA	1 cut(s)	2676
Cfr10I	RCCGGY	1 cut(s)	2640
Cfr13I	GGNCC	7 cut(s)	116, 339, 604, 613, 952, 1223, 1772
Cfr42I	CCGCGG	1 cut(s)	225
CseI	GACGC	3 cut(s)	68, 152, 244
CsiI	ACCWGGT	1 cut(s)	615
DinI	GGCGCC	3 cut(s)	220, 298, 774
DrdI	GACNNNNNNGTC	3 cut(s)	146, 149, 730
DseDI	GACNNNNNNGTC	3 cut(s)	146, 149, 730
EaeI	YGGCCR	5 cut(s)	66, 344, 565, 1080, 1930
EagI	CGGCCG	2 cut(s)	344, 565
Eam1104I	CTCTTC	4 cut(s)	828, 931, 1272, 2522
EarI	CTCTTC	4 cut(s)	828, 931, 1272, 2522
EclXI	CGGCCG	2 cut(s)	344, 565
Eco147I	AGGCCT	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	3 cut(s)	625, 1410, 1677
Eco47I	GGWCC	6 cut(s)	339, 604, 613, 952, 1223, 1772
Eco52I	CGGCCG	2 cut(s)	344, 565
Eco57I	CTGAAG	1 cut(s)	852
Eco88I	CYCGRG	1 cut(s)	1562
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	4 cut(s)	604, 613, 952, 1223
EcoRI	GAATTC	1 cut(s)	1748
EcoRII	CCWGG	9 cut(s)	399, 519, 591, 596, 606, 615, 1123, 1774, 1809
EcoT22I	ATGCAT	1 cut(s)	1959
EcoT38I	GRGCYC	1 cut(s)	192
EgeI	GGCGCC	3 cut(s)	220, 298, 774
EheI	GGCGCC	3 cut(s)	220, 298, 774
Esp3I	CGTCTC	2 cut(s)	157, 1858
FalI	AAGNNNNNCTT	4 cut(s)	1160, 1192, 1563, 1595
FaqI	GGGAC	5 cut(s)	263, 325, 502, 1209, 1391
FauI	CCCGC	5 cut(s)	220, 316, 464, 744, 1779
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	1033
FblI	GTMKAC	1 cut(s)	2611
FokI	GGATG	7 cut(s)	573, 740, 1160, 1222, 2054, 2166, 2383
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	5 cut(s)	161, 983, 1517, 2354, 2607
GsaI	CCCAGC	1 cut(s)	1365
GsuI	CTGGAG	2 cut(s)	629, 756
HaeII	RGCGCY	3 cut(s)	222, 300, 776
HaeIII	GGCC	8 cut(s)	68, 117, 346, 567, 596, 1082, 1138, 1932
HgaI	GACGC	3 cut(s)	68, 152, 244
Hin1I	GRCGYC	6 cut(s)	144, 219, 285, 297, 773, 2528
HincII	GTYRAC	2 cut(s)	333, 2612
HindII	GTYRAC	2 cut(s)	333, 2612
HphI	GGTGA	7 cut(s)	445, 478, 575, 894, 1912, 2312, 2692
Hpy166II	GTNNAC	8 cut(s)	166, 318, 333, 658, 1448, 1514, 1781, 2612
Hpy8I	GTNNAC	8 cut(s)	166, 318, 333, 658, 1448, 1514, 1781, 2612
HpyAV	CCTTC	8 cut(s)	175, 709, 1045, 1420, 1590, 2407, 2552, 2628
HpyCH4III	ACNGT	6 cut(s)	61, 516, 765, 1382, 2004, 2167
HpyCH4IV	ACGT	7 cut(s)	122, 168, 285, 1159, 1708, 2126, 2528
HpySE526I	ACGT	7 cut(s)	122, 168, 285, 1159, 1708, 2126, 2528
Hsp92I	GRCGYC	6 cut(s)	144, 219, 285, 297, 773, 2528
KasI	GGCGCC	3 cut(s)	218, 296, 772
KflI	GGGWCCC	1 cut(s)	1223
Kpn2I	TCCGGA	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	1033
KspI	CCGCGG	1 cut(s)	225
LmnI	GCTCC	5 cut(s)	357, 472, 576, 1185, 2170
LweI	GCATC	9 cut(s)	339, 1244, 1647, 1895, 2032, 2101, 2144, 2254, 2361
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	5 cut(s)	161, 983, 1517, 2354, 2607
MaeII	ACGT	7 cut(s)	122, 168, 285, 1159, 1708, 2126, 2528
MaeIII	GTNAC	5 cut(s)	466, 815, 1541, 1647, 2200
MflI	RGATCY	4 cut(s)	1714, 1897, 2089, 2359
MhlI	GDGCHC	7 cut(s)	192, 533, 581, 660, 982, 1516, 1569
MlsI	TGGCCA	2 cut(s)	68, 1082
MluCI	AATT	9 cut(s)	259, 265, 356, 483, 799, 1197, 1472, 1748, 2147
MluNI	TGGCCA	2 cut(s)	68, 1082
Mly113I	GGCGCC	3 cut(s)	219, 297, 773
MmeI	TCCRAC	6 cut(s)	237, 489, 1002, 1125, 2023, 2337
Mox20I	TGGCCA	2 cut(s)	68, 1082
Mph1103I	ATGCAT	1 cut(s)	1959
MroI	TCCGGA	1 cut(s)	573
MscI	TGGCCA	2 cut(s)	68, 1082
MseI	TTAA	5 cut(s)	843, 1629, 1821, 1952, 2229
MslI	CAYNNNNRTG	3 cut(s)	392, 464, 1572
Msp20I	TGGCCA	2 cut(s)	68, 1082
MspA1I	CMGCKG	4 cut(s)	42, 74, 224, 502
Mva1269I	GAATGC	2 cut(s)	459, 1006
MvaI	CCWGG	9 cut(s)	401, 521, 593, 598, 608, 617, 1125, 1776, 1811
MvnI	CGCG	7 cut(s)	36, 56, 79, 224, 274, 410, 2178
NarI	GGCGCC	3 cut(s)	219, 297, 773
NciI	CCSGG	3 cut(s)	343, 1006, 1934
NdeI	CATATG	1 cut(s)	747
NmeAIII	GCCGAG	2 cut(s)	337, 749
NmuCI	GTSAC	2 cut(s)	466, 1541
NruI	TCGCGA	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	1959
NspI	RCATGY	4 cut(s)	1733, 1851, 2634, 2714
OliI	CACNNNNGTG	1 cut(s)	392
PaeI	GCATGC	2 cut(s)	1733, 1851
PaeR7I	CTCGAG	1 cut(s)	1562
PagI	TCATGA	1 cut(s)	2676
PceI	AGGCCT	1 cut(s)	596
PciI	ACATGT	1 cut(s)	2710
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 147
PctI	GAATGC	2 cut(s)	459, 1006
PfeI	GAWTC	7 cut(s)	203, 1129, 1688, 1721, 1869, 2077, 2105
PflFI	GACNNNGTC	4 cut(s)	146, 161, 337, 617
PflMI	CCANNNNNTGG	2 cut(s)	1271, 2005
PfoI	TCCNGGA	1 cut(s)	606
Ple19I	CGATCG	1 cut(s)	293
PluTI	GGCGCC	3 cut(s)	222, 300, 776
Ppu21I	YACGTR	1 cut(s)	1160
PpuMI	RGGWCCY	4 cut(s)	604, 613, 952, 1223
PscI	ACATGT	1 cut(s)	2710
Psp5II	RGGWCCY	4 cut(s)	604, 613, 952, 1223
Psp6I	CCWGG	9 cut(s)	399, 519, 591, 596, 606, 615, 1123, 1774, 1809
PspFI	CCCAGC	1 cut(s)	1361
PspGI	CCWGG	9 cut(s)	399, 519, 591, 596, 606, 615, 1123, 1774, 1809
PspPI	GGNCC	7 cut(s)	116, 339, 604, 613, 952, 1223, 1772
PspPPI	RGGWCCY	4 cut(s)	604, 613, 952, 1223
PstI	CTGCAG	3 cut(s)	507, 551, 2497
PstNI	CAGNNNCTG	4 cut(s)	520, 607, 1718, 2080
PsuI	RGATCY	4 cut(s)	1714, 1897, 2089, 2359
PsyI	GACNNNGTC	4 cut(s)	146, 161, 337, 617
PvuI	CGATCG	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	502
RruI	TCGCGA	1 cut(s)	274
RseI	CAYNNNNRTG	3 cut(s)	392, 464, 1572
SacII	CCGCGG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	2610
SaqAI	TTAA	5 cut(s)	843, 1629, 1821, 1952, 2229
Sau96I	GGNCC	7 cut(s)	116, 339, 604, 613, 952, 1223, 1772
ScaI	AGTACT	2 cut(s)	698, 1355
SduI	GDGCHC	7 cut(s)	192, 533, 581, 660, 982, 1516, 1569
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	9 cut(s)	339, 1244, 1647, 1895, 2032, 2101, 2144, 2254, 2361
SfcI	CTRYAG	4 cut(s)	503, 547, 1767, 2493
SfoI	GGCGCC	3 cut(s)	220, 298, 774
Sfr274I	CTCGAG	1 cut(s)	1562
Sfr303I	CCGCGG	1 cut(s)	225
SgrBI	CCGCGG	1 cut(s)	225
SinI	GGWCC	6 cut(s)	339, 604, 613, 952, 1223, 1772
SlaI	CTCGAG	1 cut(s)	1562
SmiMI	CAYNNNNRTG	3 cut(s)	392, 464, 1572
SmlI	CTYRAG	2 cut(s)	1562, 1910
SmoI	CTYRAG	2 cut(s)	1562, 1910
SpeI	ACTAGT	1 cut(s)	1516
SphI	GCATGC	2 cut(s)	1733, 1851
Sse9I	AATT	9 cut(s)	259, 265, 356, 483, 799, 1197, 1472, 1748, 2147
SseBI	AGGCCT	1 cut(s)	596
SspDI	GGCGCC	3 cut(s)	218, 296, 772
SspMI	CTAG	5 cut(s)	161, 983, 1517, 2354, 2607
StuI	AGGCCT	1 cut(s)	596
TaaI	ACNGT	6 cut(s)	61, 516, 765, 1382, 2004, 2167
TaiI	ACGT	7 cut(s)	125, 171, 288, 1162, 1711, 2129, 2531
TaqI	TCGA	7 cut(s)	24, 201, 1241, 1563, 1587, 1594, 2611
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	9 cut(s)	259, 265, 356, 483, 799, 1197, 1472, 1748, 2147
TatI	WGTACW	8 cut(s)	672, 696, 960, 1353, 1576, 1780, 2427, 2580
TauI	GCSGC	9 cut(s)	39, 45, 117, 224, 227, 302, 384, 570, 645
TfiI	GAWTC	7 cut(s)	203, 1129, 1688, 1721, 1869, 2077, 2105
Tru1I	TTAA	5 cut(s)	843, 1629, 1821, 1952, 2229
Tru9I	TTAA	5 cut(s)	843, 1629, 1821, 1952, 2229
TscAI	CASTG	6 cut(s)	533, 902, 1387, 1559, 1731, 2325
TseFI	GTSAC	2 cut(s)	466, 1541
Tsp45I	GTSAC	2 cut(s)	466, 1541
TspDTI	ATGAA	5 cut(s)	352, 748, 778, 1382, 2610
TspGWI	ACGGA	4 cut(s)	409, 485, 740, 2549
TspRI	CASTG	6 cut(s)	533, 902, 1387, 1559, 1731, 2325
Tth111I	GACNNNGTC	4 cut(s)	146, 161, 337, 617
Van91I	CCANNNNNTGG	2 cut(s)	1271, 2005
VneI	GTGCAC	2 cut(s)	656, 1512
VpaK11BI	GGWCC	6 cut(s)	339, 604, 613, 952, 1223, 1772
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	1 cut(s)	1748
XceI	RCATGY	4 cut(s)	1733, 1851, 2634, 2714
XcmI	CCANNNNNNNNNTGG	3 cut(s)	97, 2006, 2711
XhoI	CTCGAG	1 cut(s)	1562
XmiI	GTMKAC	1 cut(s)	2611
XspI	CTAG	5 cut(s)	161, 983, 1517, 2354, 2607
ZraI	GACGTC	2 cut(s)	286, 2529
ZrmI	AGTACT	2 cut(s)	698, 1355
Zsp2I	ATGCAT	1 cut(s)	1959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.