Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

753259 .. 758418

Gene Structure 5160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGCTCCAATTCTTCATCAAAACGATCTCCGGCGGCAACACTCTGGTAATCCAGGCCCACGCACACGACTCCGTCAAGACGCTCCACGAGCGCATAGAGGCGATTACCCGCATTCCGGCGACGGAGCAGAGGCTCATTTACCGAGGCAAGCAGCTCCAGTGGGAACAGTCCCTGGCCCAGTGCTCAATCCAAAACGACGCCAGCTTGCAGCTCGTCGGCCGTCTCCGGAGCACTCACCATCCTCAGGCCTGGCAGGTCCTGGAGGACTTGGTCTCGGTTTCGTTTCGGCTCTGCCGCGGCGAAAAGGTGCACGAGCCATTGAAGTACATCAAGAGCCGCCTCAGCCAGTACTTGGCAATGGCTCAGAAGGAGAAGACGGAGGACTCTGGAGCTAGCCATATGCAGGTGTTTATACCCTCCTCGGCGCCATTGTCATTGTTCATGCTCTACAATTCGCCTGTTGCAGGTAACAAAGACATTGCAGAAGAGTCGATTAAGTATTTCCTGAATTCATATGCTACATTGTTGCCCAAAAACTTGCATAATCACTGTGCACCGATAGTGTTAGAGTTCTGTAAGTTTCTGAGAAGAGTAGGGCAGGAGGACCCTCTGTACATCTTGTGCAGGAGTGCTCTAGGTTCGTTTTGGGAGAATGCTGGAGGTTTGCAGGACTCAGAGTGTGTTGATCAGTTGGTTAGGTTGAAGGAGATTTACCCGTTTCTCACTGAGGTGGCAAATAGTTTGTCTAAGGATTTGGAGCTGAGTATGGAATCGCCTGGGAGTCTTAGGCCGTTGTTGGATGATGTGCGTGATTTTAAGGCATTCTTGCTCCCCATGCGTACTGCAATTGCCAAAGAAGTGTACTATACGGGTCCCATTTGTGCATCCTCGAAAGCACAGGCTACTAAGTACCCAGTGTTTGGGGAAGAGATTGAGCTTCTTCGAAAGGTGGACAGTGATATTGTTCATTCTGGATGGTCTCAGTATCTTGCTGTTTTGAAGGAACTACATGGGATTTGTAAACTCTATCAGGGTGGGGAAGAACAATTTTGGACGACTCTGAGGCTTAGAAAGACTGCAATATGTGCACTAGTTGTGAAATATGCAAAGCGAAGTGATGATCATCAGTGGCTTCTTGAGCACAAAGATGTACTTGATTTCGAGTCTCGAAGGCATTTGGCTATGATGATGTTCCCTGATGTTAAAGAAGACTATGAGGAGTTACATGAGATGCTGATTGATAGGTCTCAGTTATTGTCAGAATCATTTGCATACATAGGAAGTGCAGAACCCGAGTCACTGCATGCTGGATTATTTATGGAATTTAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGGGAATGGTTCTTTTTGGTATGCCAGGACATATTTAATCCACAAAATGCACTTTTTGTGGCATGCCCTAATGACCGGAGACGATTCTATCCTAATCCAGCATCTAAGGTGGATCCTATGCATCTCGATTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTAATGCATAAAGTGCAAGTGGGCATAGTCTTTGACCGTATATTTTTCCAACAGTTGGCTGGAACTTTACCATCTTTGGAAGACATACGGGATGCTGATCCTTACTTGTATAATAGTTGCAAGCAGATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTAGGATTGACATTTGTTAGAGAAGTGGAGGAGTTGGGATCCAGGAAAACTGTTGAGCTTCGCGCTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAAACTTCTTATTAAGCATCGGTTTGTCATATCTATCACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTCTCCAACTCAGTGCTCCAGACGTTCTTTTTCCGAAGTTTAGAGCTAGAAGATCTTGATTGGATGCTACATGGAAGTGAAAGTGCTATTAGTGTTGAAGACTGGAAGGCACATACTGAGTACAATGGCTACAAAGAGACTGATACTCAAATATCTTGGTTCTGGAAGATTGTTGGGGAAATGTCGGCAGAGCAGAGAAAGGTTCTTCTCTTCTTTTGGACTTCTGTGAAGTACCTTCCAGTTGAGGGGTTCCGTGGCTTGGCTTCGCGGCTGTACATCTACAAGTCCTCAGAGCCTCCTACTCGATTGCCTTCATCTCATACATGCTTTTACCGGCTGTGCTTCCCACCTTATCCATCCATGGCTGTCATGAGAGGTCGCCTCAACATCATCACCCAAGAACATGTTGGCAGCAGCTTTGGGACATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

770

Amino Acids

88.38

Weight (kDa)

6.15

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	5 - 76	4.7e-16	Ubiquitin family
HECT	PF00632	459 - 762	6.7e-79	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	3 cut(s)	244, 394, 455
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	3 cut(s)	352, 920, 1579
AccII	CGCG	3 cut(s)	297, 1752, 2149
AccIII	TCCGGA	1 cut(s)	225
AciI	CCGC	7 cut(s)	33, 109, 295, 297, 337, 1360, 2149
AclWI	GGATC	7 cut(s)	1466, 1479, 1616, 1658, 1671, 1722, 1735
AcoI	YGGCCR	2 cut(s)	217, 1504
AcsI	RAATTY	2 cut(s)	508, 1322
AcyI	GRCGYC	2 cut(s)	198, 425
AfiI	CCNNNNNNNGG	9 cut(s)	115, 244, 352, 403, 464, 920, 1579, 2126, 2140
AflIII	ACRYGT	1 cut(s)	2284
AgsI	TTSAA	4 cut(s)	322, 703, 1000, 1979
AhlI	ACTAGT	1 cut(s)	1090
AjnI	CCWGG	8 cut(s)	51, 171, 248, 258, 775, 1348, 1383, 1730
AleI	CACNNNNGTG	1 cut(s)	728
Alw21I	GWGCWC	8 cut(s)	185, 233, 312, 556, 634, 1090, 1143, 1899
Alw26I	GTCTC	7 cut(s)	227, 277, 984, 1170, 1251, 1432, 2012
Alw44I	GTGCAC	3 cut(s)	308, 552, 1086
AlwI	GGATC	7 cut(s)	1466, 1479, 1616, 1658, 1671, 1722, 1735
AlwNI	CAGNNNCTG	3 cut(s)	172, 259, 1654
Ama87I	CYCGRG	1 cut(s)	1292
Aor13HI	TCCGGA	1 cut(s)	225
AoxI	GGCC	6 cut(s)	54, 174, 217, 246, 788, 1504
ApaLI	GTGCAC	3 cut(s)	308, 552, 1086
ApeKI	GCWGC	4 cut(s)	151, 208, 2292, 2295
ApoI	RAATTY	2 cut(s)	508, 1322
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AspLEI	GCGC	3 cut(s)	93, 427, 1754
AspS9I	GGNCC	6 cut(s)	55, 175, 256, 604, 872, 1346
AsuC2I	CCSGG	1 cut(s)	1508
AsuHPI	GGTGA	5 cut(s)	227, 1486, 1522, 1886, 2266
AsuII	TTCGAA	1 cut(s)	943
AsuNHI	GCTAGC	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	1292
AvaII	GGWCC	4 cut(s)	256, 604, 872, 1346
AxyI	CCTNAGG	1 cut(s)	243
BaeGI	GKGCMC	3 cut(s)	312, 556, 1090
BamHI	GGATCC	3 cut(s)	1471, 1663, 1727
BanI	GGYRCC	1 cut(s)	424
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
BauI	CACGAG	2 cut(s)	86, 311
BbsI	GAAGAC	4 cut(s)	380, 1215, 1611, 1986
Bbv12I	GWGCWC	8 cut(s)	185, 233, 312, 556, 634, 1090, 1143, 1899
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	4 cut(s)	163, 220, 2304, 2307
BccI	CCATC	4 cut(s)	246, 969, 1603, 2245
BceAI	ACGGC	2 cut(s)	204, 775
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BciT130I	CCWGG	8 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1732
BclI	TGATCA	2 cut(s)	685, 1120
BcnI	CCSGG	1 cut(s)	1508
BcoDI	GTCTC	7 cut(s)	227, 277, 984, 1170, 1251, 1432, 2012
BcuI	ACTAGT	1 cut(s)	1090
BfaI	CTAG	4 cut(s)	393, 635, 1091, 1928
BfmI	CTRYAG	1 cut(s)	1341
BfoI	RGCGCY	1 cut(s)	428
BfuAI	ACCTGC	3 cut(s)	244, 394, 455
BglII	AGATCT	1 cut(s)	1933
BisI	GCNGC	9 cut(s)	34, 152, 209, 295, 298, 337, 2150, 2293, 2296
BlsI	GCNGC	9 cut(s)	35, 153, 210, 296, 299, 338, 2151, 2294, 2297
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	9 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1508, 1732
Bme18I	GGWCC	4 cut(s)	256, 604, 872, 1346
BmeT110I	CYCGRG	1 cut(s)	1292
BmgT120I	GGNCC	6 cut(s)	55, 175, 256, 604, 872, 1346
BmiI	GGNNCC	8 cut(s)	426, 606, 873, 874, 1473, 1665, 1729, 2132
BmrFI	CCNGG	9 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1508, 1732
BmrI	ACTGGG	2 cut(s)	172, 908
BmsI	GCATC	8 cut(s)	893, 1221, 1469, 1489, 1606, 1675, 1828, 1935
BmtI	GCTAGC	1 cut(s)	396
BmuI	ACTGGG	2 cut(s)	172, 908
BpiI	GAAGAC	4 cut(s)	380, 1215, 1611, 1986
BplI	GAGNNNNNCTC	2 cut(s)	2247, 2279
BpmI	CTGGAG	5 cut(s)	140, 281, 408, 678, 1883
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	1157
BpuMI	CCSGG	1 cut(s)	1508
BsaBI	GATNNNNATC	2 cut(s)	1122, 1620
BsaHI	GRCGYC	2 cut(s)	198, 425
BsaI	GGTCTC	3 cut(s)	277, 984, 1251
BsaJI	CCNNGG	7 cut(s)	142, 171, 295, 420, 776, 2134, 2241
BsaWI	WCCGGW	2 cut(s)	225, 1434
Bsc4I	CCNNNNNNNGG	9 cut(s)	115, 244, 352, 403, 464, 920, 1579, 2126, 2140
Bse118I	RCCGGY	1 cut(s)	2214
Bse1I	ACTGG	6 cut(s)	157, 178, 346, 914, 1988, 2120
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	363, 477
Bse8I	GATNNNNATC	2 cut(s)	1122, 1620
BseAI	TCCGGA	1 cut(s)	225
BseBI	CCWGG	8 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1732
BseDI	CCNNGG	7 cut(s)	142, 171, 295, 420, 776, 2134, 2241
BseGI	GGATG	7 cut(s)	238, 805, 884, 980, 1621, 1950, 2237
BseJI	GATNNNNATC	2 cut(s)	1122, 1620
BseLI	CCNNNNNNNGG	9 cut(s)	115, 244, 352, 403, 464, 920, 1579, 2126, 2140
BseMI	GCAATG	2 cut(s)	363, 477
BseNI	ACTGG	6 cut(s)	157, 178, 346, 914, 1988, 2120
BseRI	GAGGAG	3 cut(s)	409, 1232, 1733
BseSI	GKGCMC	3 cut(s)	312, 556, 1090
BseX3I	CGGCCG	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	163, 220, 2304, 2307
BsgI	GTGCAG	2 cut(s)	643, 1305
Bsh1236I	CGCG	3 cut(s)	297, 1752, 2149
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	6 cut(s)	56, 176, 219, 248, 790, 1506
BshNI	GGYRCC	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	8 cut(s)	185, 233, 312, 556, 634, 1090, 1143, 1899
BsiHKCI	CYCGRG	1 cut(s)	1292
BsiSI	CCGG	6 cut(s)	30, 116, 226, 1435, 1507, 2215
BslFI	GGGAC	2 cut(s)	154, 858
BslI	CCNNNNNNNGG	9 cut(s)	115, 244, 352, 403, 464, 920, 1579, 2126, 2140
BsmAI	GTCTC	7 cut(s)	227, 277, 984, 1170, 1251, 1432, 2012
BsmBI	CGTCTC	2 cut(s)	227, 1432
BsmFI	GGGAC	2 cut(s)	154, 858
BsmI	GAATGC	3 cut(s)	111, 658, 821
BsnI	GGCC	6 cut(s)	56, 176, 219, 248, 790, 1506
Bso31I	GGTCTC	3 cut(s)	277, 984, 1251
BsoBI	CYCGRG	1 cut(s)	1292
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	8 cut(s)	185, 233, 312, 556, 634, 1090, 1143, 1899
Bsp13I	TCCGGA	1 cut(s)	225
Bsp1407I	TGTACA	2 cut(s)	612, 2154
Bsp143I	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
Bsp19I	CCATGG	1 cut(s)	2241
BspACI	CCGC	7 cut(s)	33, 109, 295, 297, 337, 1360, 2149
BspANI	GGCC	6 cut(s)	56, 176, 219, 248, 790, 1506
BspEI	TCCGGA	1 cut(s)	225
BspFNI	CGCG	3 cut(s)	297, 1752, 2149
BspHI	TCATGA	1 cut(s)	2250
BspLI	GGNNCC	8 cut(s)	426, 606, 873, 874, 1473, 1665, 1729, 2132
BspMI	ACCTGC	3 cut(s)	244, 394, 455
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	7 cut(s)	1466, 1479, 1616, 1658, 1671, 1722, 1735
BspT104I	TTCGAA	1 cut(s)	943
BspT107I	GGYRCC	1 cut(s)	424
BspTNI	GGTCTC	3 cut(s)	277, 984, 1251
BsrDI	GCAATG	2 cut(s)	363, 477
BsrFI	RCCGGY	1 cut(s)	2214
BsrGI	TGTACA	2 cut(s)	612, 2154
BsrI	ACTGG	6 cut(s)	157, 178, 346, 914, 1988, 2120
BssAI	RCCGGY	1 cut(s)	2214
BssECI	CCNNGG	7 cut(s)	142, 171, 295, 420, 776, 2134, 2241
BssMI	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
BssNI	GRCGYC	2 cut(s)	198, 425
BssSI	CACGAG	2 cut(s)	86, 311
BssT1I	CCWWGG	1 cut(s)	2241
Bst2BI	CACGAG	2 cut(s)	86, 311
Bst2UI	CCWGG	8 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1732
Bst4CI	ACNGT	6 cut(s)	168, 551, 956, 1562, 1578, 1741
Bst6I	CTCTTC	4 cut(s)	480, 583, 921, 2096
BstACI	GRCGYC	2 cut(s)	198, 425
BstAPI	GCANNNNNTGC	2 cut(s)	1085, 1537
BstAUI	TGTACA	2 cut(s)	612, 2154
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	8 cut(s)	149, 202, 206, 394, 1305, 1423, 1504, 1646
BstDSI	CCRYGG	3 cut(s)	295, 2134, 2241
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	7 cut(s)	238, 805, 884, 980, 1621, 1950, 2237
BstFNI	CGCG	3 cut(s)	297, 1752, 2149
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	3 cut(s)	93, 427, 1754
BstKTI	GATC	8 cut(s)	27, 688, 1123, 1474, 1624, 1666, 1730, 1936
BstMAI	GTCTC	7 cut(s)	227, 277, 984, 1170, 1251, 1432, 2012
BstMBI	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 342, 835, 1085, 1138, 1537
BstNI	CCWGG	8 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1732
BstNSI	RCATGY	4 cut(s)	1307, 1425, 2208, 2288
BstSCI	CCNGG	9 cut(s)	51, 171, 248, 258, 775, 1348, 1383, 1506, 1730
BstSFI	CTRYAG	1 cut(s)	1341
BstSLI	GKGCMC	3 cut(s)	312, 556, 1090
BstUI	CGCG	3 cut(s)	297, 1752, 2149
BstV1I	GCAGC	4 cut(s)	163, 220, 2304, 2307
BstV2I	GAAGAC	4 cut(s)	380, 1215, 1611, 1986
BstX2I	RGATCY	4 cut(s)	1471, 1663, 1727, 1933
BstYI	RGATCY	4 cut(s)	1471, 1663, 1727, 1933
BstZI	CGGCCG	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	6 cut(s)	56, 176, 219, 248, 790, 1506
BtgI	CCRYGG	3 cut(s)	295, 2134, 2241
BtsCI	GGATG	7 cut(s)	238, 805, 884, 980, 1621, 1950, 2237
BtsI	GCAGTG	1 cut(s)	1298
BveI	ACCTGC	3 cut(s)	244, 394, 455
Cac8I	GCNNGC	8 cut(s)	149, 202, 206, 394, 1305, 1423, 1504, 1646
CaiI	CAGNNNCTG	3 cut(s)	172, 259, 1654
CciI	TCATGA	1 cut(s)	2250
CfoI	GCGC	3 cut(s)	93, 427, 1754
Cfr10I	RCCGGY	1 cut(s)	2214
Cfr13I	GGNCC	6 cut(s)	55, 175, 256, 604, 872, 1346
Cfr42I	CCGCGG	1 cut(s)	298
CseI	GACGC	2 cut(s)	88, 206
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	8 cut(s)	26, 687, 1122, 1473, 1623, 1665, 1729, 1935
DpnII	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
DraI	TTTAAA	1 cut(s)	1327
EaeI	YGGCCR	2 cut(s)	217, 1504
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	4 cut(s)	480, 583, 921, 2096
EarI	CTCTTC	4 cut(s)	480, 583, 921, 2096
EclXI	CGGCCG	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	2241
Eco147I	AGGCCT	1 cut(s)	248
Eco31I	GGTCTC	3 cut(s)	277, 984, 1251
Eco47I	GGWCC	4 cut(s)	256, 604, 872, 1346
Eco52I	CGGCCG	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	1292
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	3 cut(s)	256, 604, 872
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	8 cut(s)	51, 171, 248, 258, 775, 1348, 1383, 1730
EcoT14I	CCWWGG	1 cut(s)	2241
EcoT22I	ATGCAT	2 cut(s)	1482, 1533
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	2241
Esp3I	CGTCTC	2 cut(s)	227, 1432
FalI	AAGNNNNNCTT	4 cut(s)	809, 841, 1137, 1169
FaqI	GGGAC	2 cut(s)	154, 858
FauI	CCCGC	2 cut(s)	116, 1353
FauNDI	CATATG	2 cut(s)	399, 514
FbaI	TGATCA	2 cut(s)	685, 1120
Fnu4HI	GCNGC	9 cut(s)	34, 152, 209, 295, 298, 337, 2150, 2293, 2296
FokI	GGATG	7 cut(s)	225, 812, 871, 987, 1628, 1957, 2224
Fsp4HI	GCNGC	9 cut(s)	34, 152, 209, 295, 298, 337, 2150, 2293, 2296
FspBI	CTAG	4 cut(s)	393, 635, 1091, 1928
GlaI	GCGC	3 cut(s)	92, 426, 1753
GluI	GCNGC	9 cut(s)	34, 152, 209, 295, 298, 337, 2150, 2293, 2296
GsuI	CTGGAG	5 cut(s)	140, 281, 408, 678, 1883
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	6 cut(s)	56, 176, 219, 248, 790, 1506
HapII	CCGG	6 cut(s)	30, 116, 226, 1435, 1507, 2215
HgaI	GACGC	2 cut(s)	88, 206
HhaI	GCGC	3 cut(s)	93, 427, 1754
Hin1I	GRCGYC	2 cut(s)	198, 425
Hin6I	GCGC	3 cut(s)	91, 425, 1752
HinP1I	GCGC	3 cut(s)	91, 425, 1752
HpaII	CCGG	6 cut(s)	30, 116, 226, 1435, 1507, 2215
HphI	GGTGA	5 cut(s)	227, 1486, 1522, 1886, 2266
Hpy166II	GTNNAC	7 cut(s)	310, 554, 862, 952, 1022, 1088, 1355
Hpy188I	TCNGA	8 cut(s)	366, 585, 676, 1062, 1261, 1684, 1916, 2173
Hpy8I	GTNNAC	7 cut(s)	310, 554, 862, 952, 1022, 1088, 1355
Hpy99I	CGWCG	3 cut(s)	124, 200, 218
HpyAV	CCTTC	7 cut(s)	361, 697, 994, 1164, 1981, 2126, 2202
HpyCH4III	ACNGT	6 cut(s)	168, 551, 956, 1562, 1578, 1741
HpyCH4IV	ACGT	1 cut(s)	1904
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 342, 835, 1085, 1138, 1537
HpySE526I	ACGT	1 cut(s)	1904
Hsp92I	GRCGYC	2 cut(s)	198, 425
HspAI	GCGC	3 cut(s)	91, 425, 1752
KasI	GGCGCC	1 cut(s)	424
KflI	GGGWCCC	1 cut(s)	872
Kpn2I	TCCGGA	1 cut(s)	225
Ksp22I	TGATCA	2 cut(s)	685, 1120
KspI	CCGCGG	1 cut(s)	298
Kzo9I	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
LmnI	GCTCC	9 cut(s)	9, 87, 124, 159, 228, 389, 757, 834, 1902
Lsp1109I	GCAGC	4 cut(s)	163, 220, 2304, 2307
LweI	GCATC	8 cut(s)	893, 1221, 1469, 1489, 1606, 1675, 1828, 1935
MaeI	CTAG	4 cut(s)	393, 635, 1091, 1928
MaeII	ACGT	1 cut(s)	1904
MaeIII	GTNAC	4 cut(s)	467, 1221, 1296, 1774
MalI	GATC	8 cut(s)	26, 687, 1122, 1473, 1623, 1665, 1729, 1935
MboI	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	4 cut(s)	1471, 1663, 1727, 1933
MhlI	GDGCHC	8 cut(s)	185, 233, 312, 556, 634, 1090, 1143, 1899
MluCI	AATT	6 cut(s)	8, 451, 508, 846, 1046, 1322
Mly113I	GGCGCC	1 cut(s)	425
MlyI	GAGTC	8 cut(s)	62, 377, 497, 665, 790, 1051, 1172, 1304
MmeI	TCCRAC	3 cut(s)	777, 1597, 1911
Mph1103I	ATGCAT	2 cut(s)	1482, 1533
MroI	TCCGGA	1 cut(s)	225
MseI	TTAA	8 cut(s)	495, 816, 1203, 1326, 1395, 1526, 1803, 1815
MslI	CAYNNNNRTG	3 cut(s)	728, 1146, 1956
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	6 cut(s)	30, 116, 226, 1435, 1507, 2215
MspR9I	CCNGG	9 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1508, 1732
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	3 cut(s)	111, 658, 821
MvaI	CCWGG	8 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1732
MvnI	CGCG	3 cut(s)	297, 1752, 2149
MwoI	GCNNNNNNNGC	6 cut(s)	88, 342, 835, 1085, 1138, 1537
NarI	GGCGCC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	1508
NcoI	CCATGG	1 cut(s)	2241
NdeI	CATATG	2 cut(s)	399, 514
NdeII	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
NheI	GCTAGC	1 cut(s)	392
NlaIV	GGNNCC	8 cut(s)	426, 606, 873, 874, 1473, 1665, 1729, 2132
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	1296
NsiI	ATGCAT	2 cut(s)	1482, 1533
NspI	RCATGY	4 cut(s)	1307, 1425, 2208, 2288
NspV	TTCGAA	1 cut(s)	943
OliI	CACNNNNGTG	1 cut(s)	728
PaeI	GCATGC	2 cut(s)	1307, 1425
PagI	TCATGA	1 cut(s)	2250
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	248
PciI	ACATGT	1 cut(s)	2284
PctI	GAATGC	3 cut(s)	111, 658, 821
PfeI	GAWTC	5 cut(s)	770, 1262, 1443, 1651, 1679
PflFI	GACNNNGTC	2 cut(s)	71, 269
PflMI	CCANNNNNTGG	3 cut(s)	352, 920, 1579
PfoI	TCCNGGA	2 cut(s)	258, 1730
PkrI	GCNGC	9 cut(s)	35, 153, 210, 296, 299, 338, 2151, 2294, 2297
PleI	GAGTC	8 cut(s)	62, 377, 496, 665, 789, 1051, 1171, 1303
PluTI	GGCGCC	1 cut(s)	428
PpsI	GAGTC	8 cut(s)	62, 377, 496, 665, 789, 1051, 1171, 1303
PpuMI	RGGWCCY	3 cut(s)	256, 604, 872
PscI	ACATGT	1 cut(s)	2284
Psp5II	RGGWCCY	3 cut(s)	256, 604, 872
Psp6I	CCWGG	8 cut(s)	51, 171, 248, 258, 775, 1348, 1383, 1730
PspGI	CCWGG	8 cut(s)	51, 171, 248, 258, 775, 1348, 1383, 1730
PspN4I	GGNNCC	8 cut(s)	426, 606, 873, 874, 1473, 1665, 1729, 2132
PspPI	GGNCC	6 cut(s)	55, 175, 256, 604, 872, 1346
PspPPI	RGGWCCY	3 cut(s)	256, 604, 872
PstNI	CAGNNNCTG	3 cut(s)	172, 259, 1654
PsuI	RGATCY	4 cut(s)	1471, 1663, 1727, 1933
PsyI	GACNNNGTC	2 cut(s)	71, 269
RseI	CAYNNNNRTG	3 cut(s)	728, 1146, 1956
SacII	CCGCGG	1 cut(s)	298
SaqAI	TTAA	8 cut(s)	495, 816, 1203, 1326, 1395, 1526, 1803, 1815
SatI	GCNGC	9 cut(s)	34, 152, 209, 295, 298, 337, 2150, 2293, 2296
Sau3AI	GATC	8 cut(s)	24, 685, 1120, 1471, 1621, 1663, 1727, 1933
Sau96I	GGNCC	6 cut(s)	55, 175, 256, 604, 872, 1346
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	8 cut(s)	62, 377, 497, 665, 790, 1051, 1172, 1304
ScrFI	CCNGG	9 cut(s)	53, 173, 250, 260, 777, 1350, 1385, 1508, 1732
SduI	GDGCHC	8 cut(s)	185, 233, 312, 556, 634, 1090, 1143, 1899
SfaNI	GCATC	8 cut(s)	893, 1221, 1469, 1489, 1606, 1675, 1828, 1935
SfcI	CTRYAG	1 cut(s)	1341
SfoI	GGCGCC	1 cut(s)	426
Sfr303I	CCGCGG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	943
SgrBI	CCGCGG	1 cut(s)	298
SinI	GGWCC	4 cut(s)	256, 604, 872, 1346
SmiMI	CAYNNNNRTG	3 cut(s)	728, 1146, 1956
SmlI	CTYRAG	1 cut(s)	1136
SmoI	CTYRAG	1 cut(s)	1136
SpeI	ACTAGT	1 cut(s)	1090
SphI	GCATGC	2 cut(s)	1307, 1425
Sse9I	AATT	6 cut(s)	8, 451, 508, 846, 1046, 1322
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	7 cut(s)	33, 109, 295, 297, 337, 1360, 2149
SspDI	GGCGCC	1 cut(s)	424
SspMI	CTAG	4 cut(s)	393, 635, 1091, 1928
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	9 cut(s)	51, 171, 248, 258, 775, 1348, 1383, 1506, 1730
StyI	CCWWGG	1 cut(s)	2241
TaaI	ACNGT	6 cut(s)	168, 551, 956, 1562, 1578, 1741
TaiI	ACGT	1 cut(s)	1907
TaqI	TCGA	7 cut(s)	491, 890, 943, 1161, 1168, 1485, 2185
TasI	AATT	6 cut(s)	8, 451, 508, 846, 1046, 1322
TatI	WGTACW	8 cut(s)	324, 348, 612, 861, 1150, 1354, 2001, 2154
TauI	GCSGC	5 cut(s)	36, 297, 300, 339, 2152
TfiI	GAWTC	5 cut(s)	770, 1262, 1443, 1651, 1679
Tru1I	TTAA	8 cut(s)	495, 816, 1203, 1326, 1395, 1526, 1803, 1815
Tru9I	TTAA	8 cut(s)	495, 816, 1203, 1326, 1395, 1526, 1803, 1815
TseFI	GTSAC	1 cut(s)	1296
TseI	GCWGC	4 cut(s)	151, 208, 2292, 2295
Tsp45I	GTSAC	1 cut(s)	1296
TspDTI	ATGAA	5 cut(s)	4, 430, 501, 956, 2184
TspGWI	ACGGA	4 cut(s)	61, 137, 392, 2123
Tth111I	GACNNNGTC	2 cut(s)	71, 269
Van91I	CCANNNNNTGG	3 cut(s)	352, 920, 1579
VneI	GTGCAC	3 cut(s)	308, 552, 1086
VpaK11BI	GGWCC	4 cut(s)	256, 604, 872, 1346
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	508, 1322
XceI	RCATGY	4 cut(s)	1307, 1425, 2208, 2288
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1580, 2285
XspI	CTAG	4 cut(s)	393, 635, 1091, 1928
ZrmI	AGTACT	1 cut(s)	350
Zsp2I	ATGCAT	2 cut(s)	1482, 1533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.