Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

748911 .. 750717

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATGATGTTCCCTGATGTTAAAGAAGACTATGAGGAGTTACATGAGATGCTGATTGATAGGTCTCAATTATTATCAGAATCATTTGCATACATAGGAAGTGCAGAACCCGAGTCACTGCATGCTGGATTATTTGTGGAATTTAAAAATGAGGAAGTTACAGGTCCAGGTGTACTGCGGGAATGGTTCTTTTTGGTATGCCAGGACATATTTAATCCACAAAATGCACTTTTTGTGTCATGCCCTAATGACCGGAGACGATTCTATCCTAATCCAGCATCTAAGGTGGATCCTATGCATCTCGATTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTAATGCATAAAGTGCAAGTGGGCATAGTCTTTGACCGTATATTTTTCCAACAGTTGGCTGGAACTTTACCATCTTTGGAAGACATACGGGATGCTGATAGTTGCAAGCAGATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTAGGATTGACATTTGTTAGAGAAGTGGAGGGGTTGGGATCCAGGAAAACTGTTGAGCTTTGCGCTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAAACTTCTTATTAAGCATCAGTTTGTCATATCTATCACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTCTCCAACTCAGTGCTCCAGACTTTCTTTTTCCGAAGTTTGGAGCTAGAAGATCTTGATTGGATGCTACAAGGAAGTGAAAGTGCTATTAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

260

Amino Acids

29.71

Weight (kDa)

4.81

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	65 - 255	2e-35	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	6 cut(s)	284, 297, 461, 474, 525, 538
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	397, 724
AjnI	CCWGG	3 cut(s)	166, 201, 533
AluBI	AGCT	3 cut(s)	341, 550, 730
AluI	AGCT	3 cut(s)	341, 550, 730
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	2 cut(s)	69, 250
AlwI	GGATC	6 cut(s)	284, 297, 461, 474, 525, 538
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	304, 340, 689
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	164
BamHI	GGATCC	3 cut(s)	289, 466, 530
BbsI	GAAGAC	2 cut(s)	33, 429
Bbv12I	GWGCWC	1 cut(s)	702
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	3 cut(s)	168, 203, 535
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	69, 250
BfaI	CTAG	1 cut(s)	731
BglII	AGATCT	1 cut(s)	736
Bme1390I	CCNGG	4 cut(s)	168, 203, 326, 535
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	291, 468, 532
BmrFI	CCNGG	4 cut(s)	168, 203, 326, 535
BmsI	GCATC	7 cut(s)	39, 287, 307, 424, 478, 631, 738
BpiI	GAAGAC	2 cut(s)	33, 429
BpmI	CTGGAG	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 724
BseBI	CCWGG	3 cut(s)	168, 203, 535
BseGI	GGATG	2 cut(s)	439, 753
BseLI	CCNNNNNNNGG	2 cut(s)	397, 724
BseMII	CTCAG	1 cut(s)	708
BseRI	GAGGAG	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	702
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	253, 325
BslI	CCNNNNNNNGG	2 cut(s)	397, 724
BsmAI	GTCTC	2 cut(s)	69, 250
BsmBI	CGTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	289, 466, 530, 736
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	707
BspLI	GGNNCC	3 cut(s)	291, 468, 532
BspPI	GGATC	6 cut(s)	284, 297, 461, 474, 525, 538
BspTNI	GGTCTC	1 cut(s)	69
BssMI	GATC	4 cut(s)	289, 466, 530, 736
Bst2UI	CCWGG	3 cut(s)	168, 203, 535
Bst4CI	ACNGT	3 cut(s)	380, 396, 544
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	123, 322, 449
BstDEI	CTNAG	2 cut(s)	282, 694
BstF5I	GGATG	2 cut(s)	439, 753
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	4 cut(s)	292, 469, 533, 739
BstMAI	GTCTC	2 cut(s)	69, 250
BstMBI	GATC	4 cut(s)	289, 466, 530, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	3 cut(s)	168, 203, 535
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	4 cut(s)	166, 201, 324, 533
BstV2I	GAAGAC	2 cut(s)	33, 429
BstX2I	RGATCY	4 cut(s)	289, 466, 530, 736
BstYI	RGATCY	4 cut(s)	289, 466, 530, 736
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	439, 753
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	3 cut(s)	116, 642, 702
Cac8I	GCNNGC	3 cut(s)	123, 322, 449
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	3 cut(s)	44, 122, 240
CviJI	RGCY	5 cut(s)	324, 341, 401, 550, 730
CviKI_1	RGCY	5 cut(s)	324, 341, 401, 550, 730
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	282, 694
DpnI	GATC	4 cut(s)	291, 468, 532, 738
DpnII	GATC	4 cut(s)	289, 466, 530, 736
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	3 cut(s)	166, 201, 533
EcoT22I	ATGCAT	2 cut(s)	300, 351
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	47, 125, 243
FatI	CATG	3 cut(s)	43, 121, 239
FauI	CCCGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	446, 760
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	1 cut(s)	556
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	2 cut(s)	253, 325
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	47, 125, 243
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HinfI	GANTC	5 cut(s)	80, 113, 261, 454, 482
HpaII	CCGG	2 cut(s)	253, 325
HphI	GGTGA	3 cut(s)	304, 340, 689
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	79, 487, 719
Hpy188III	TCNNGA	5 cut(s)	302, 458, 470, 703, 740
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	3 cut(s)	380, 396, 544
HpyCH4V	TGCA	9 cut(s)	89, 104, 121, 227, 298, 349, 358, 447, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	282, 694
Hsp92II	CATG	3 cut(s)	47, 125, 243
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	289, 466, 530, 736
LmnI	GCTCC	2 cut(s)	705, 727
LweI	GCATC	7 cut(s)	39, 287, 307, 424, 478, 631, 738
MaeI	CTAG	1 cut(s)	731
MaeIII	GTNAC	4 cut(s)	39, 114, 157, 577
MalI	GATC	4 cut(s)	291, 468, 532, 738
MboI	GATC	4 cut(s)	289, 466, 530, 736
MboII	GAAGA	3 cut(s)	38, 434, 746
MflI	RGATCY	4 cut(s)	289, 466, 530, 736
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	2 cut(s)	68, 140
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	415, 714
MnlI	CCTC	4 cut(s)	28, 145, 514, 589
Mph1103I	ATGCAT	2 cut(s)	300, 351
MseI	TTAA	7 cut(s)	21, 144, 213, 344, 606, 618, 774
MspI	CCGG	2 cut(s)	253, 325
MspR9I	CCNGG	4 cut(s)	168, 203, 326, 535
MvaI	CCWGG	3 cut(s)	168, 203, 535
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	289, 466, 530, 736
NlaIII	CATG	3 cut(s)	47, 125, 243
NlaIV	GGNNCC	3 cut(s)	291, 468, 532
NmuCI	GTSAC	1 cut(s)	114
NsiI	ATGCAT	2 cut(s)	300, 351
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	80, 261, 454, 482
PflMI	CCANNNNNTGG	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	533
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	3 cut(s)	166, 201, 533
PspGI	CCWGG	3 cut(s)	166, 201, 533
PspN4I	GGNNCC	3 cut(s)	291, 468, 532
PspPI	GGNCC	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	4 cut(s)	289, 466, 530, 736
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SaqAI	TTAA	7 cut(s)	21, 144, 213, 344, 606, 618, 774
Sau3AI	GATC	4 cut(s)	289, 466, 530, 736
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	4 cut(s)	168, 203, 326, 535
SduI	GDGCHC	1 cut(s)	702
SetI	ASST	9 cut(s)	65, 166, 172, 288, 317, 343, 552, 673, 732
SfaNI	GCATC	7 cut(s)	39, 287, 307, 424, 478, 631, 738
SinI	GGWCC	1 cut(s)	164
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	68, 140
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	4 cut(s)	166, 201, 324, 533
TaaI	ACNGT	3 cut(s)	380, 396, 544
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	68, 140
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	80, 261, 454, 482
Tru1I	TTAA	7 cut(s)	21, 144, 213, 344, 606, 618, 774
Tru9I	TTAA	7 cut(s)	21, 144, 213, 344, 606, 618, 774
TscAI	CASTG	3 cut(s)	123, 649, 702
TseFI	GTSAC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	114
TspRI	CASTG	3 cut(s)	123, 649, 702
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	731
Zsp2I	ATGCAT	2 cut(s)	300, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.