Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

476687 .. 483666

Gene Structure 6980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G009700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGTCCATCACCGGGAGCCCCACCACCAGCACCGTCGATTGCGCCTACCAGCGCAGCGACAGCACAGCCCTTGCCGCCGTCGCCGCCGCGGTGGATCAACTACATCAGCGATTGTCCTCCAAGCGCAAATTAGACGACTATGGCGGGCCCACCTTCTCCGACGACGAGGACGACGCCGTTCTCTCTGACCTAGTACACGTCAGAATGAGGAAGGACGAGCCCAACGCCGTCGATTCGTCGTCCAACGGCGCCGCCAACCCCCCTCACTCCTCAGGCAACACCGACCACCTCAATTCCAGGGTTCCCAATGCCCGATCGACCTCTCACGGCGAGTCCACCCACCCCGAGTCGACTCGGTCCCGAGCCATGCTCCAATTCTTCATCAGAACCATGTCGGGGGGCAACAATCTTGTAATCCAGGCCTACGCTCACGACACCGTGAAATCGCTGCACGAGCGCATCCAAACGATCACCGGCATTCCGGTTTTCGAGCAGAGGCTTATTTACAGAGGCAAACAGCTTCAGTGGGAGCAGTCACTGGCCGAGTGCTCCATCCAAAACGACGCCAGTTTGCAACTGGTGGGGCGCTTGCGAAGCACCGACCACCCCCAGGCGTGGCAAGTCCTGGAGGACATAGTCACCACAGCATTTCGGTTGTGCCGAGGTGAAGTGGTTCACGAACCATCGAAATACATCAAGAGCCGGATGAGCCAGTACTTGGCCATGGCTCAGAAGGAGAAGAACGACTCTGGGGTTAGCCATCTCCAGGTCTTCGTCCCGTCCTCGGCCCCCTTGGCACTGCTGATGCTGTATGTTTCTACTCTTCCAGGTAACAAAACGGTCGCCGAAACTTCGATAAAGTATTTTCTGAATAACTACCCTACTTTGTTGCCCAAACACTTGCATAATCACTGCGCGCCTATAGTGTTAGAGTTTTGTAAGTTTCTTAGGAGATTAGGGCAGGAGGACCCCCTGTACCTACTGTGCCGGAGCGCCCTTGGTTCCTTGTTGGAAAATGTTGGAAATTTGCAGGAATCGGAGAGTGTTGAGGTATTGATTGGTGGGTTGAAGGAGATATCTCCATTTGTTAGTGAGCTGGCAACTATCTTGTCCAGGGATTTGTTACTGAGTATGGAGTTTCCTACTTGTGGCAGGCCGATGTCGGATGATGTAAGTGATTTTAAGGCATTCTTGCTCCCTTTGCGTACTGCAGTTGAGCAGCAAGTGTGTTTCGGTCCTATTTCTGCATCCTTGAAAGGGAAGGCTTGTAAGCATCCCTTGTATGGGGAAGAGATTGAGCTTCTGCGTGACATACAGGCTGATTTGCTCCTAAAAATGGATGAATGCCTTGGAAAAATGGGAGAGTTTTTGGCTGGGAAAGGAAAGGGGGAGGGTGATATTGTTCATTCTGGATGGTCACAGTATCTGTCCATTTTGAAGGAGTTGAGTGGAATTTGTATACTTTATCAGGGCGGCGAAGAACAACTCAAGAATATTCTGAGGCTTAGAAGGGCTTCTTTATGTGCACTTGTTGTCAAATGTGCAAAGCGAAGTGACGATCATCAGTGGCTTATTCAGCACAAAGATTTGCTTGATTTCGAGTCTCGGAGGCATTTGGCAATGATGATGTTCCCTGATGTTAAAGAAGACTACGAGGAGCTGCATGAGATGCTCATTGATAGGTCTCAATTGTTGGCAGAATCATTTGAGTACATAGGACGCGCGGAACCTGAGTCATTGCACGGTGGTTTATTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGGGAGTGGTTCTTTTTGGTATGCCAGGCCATATTTAATCCACAAAATGCACTTTTTGTTGCATGCCCTCATGATCATAGAAGGTTCTATCCTAATCCAGCATCTAAGGTGGATCCTCTGCACCTCGAGTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTGATGCATAAAGTGCAAGTCGGCATTGTCTTTGATCGTGTGTTTTTCCAGCAACTGGCTGGAACTTTAGATTTATCTTTGGAAGACATACGAGATGCTGATCCGTTCTTGTATAATAGTTGCAAGCAGATACTCGAAATGGATGCCGAGTTTATTGATTCAGATGCTTTAGGATTGACATTTGTTAGAGAGGTGGAGGAGTTAGGAGCCAGGAAAACTGTGGAGCTTTGCCCTGGTGGGAAAAGCAAAATTGTGAACAGCAAGAACAGGGAGGAATATGTTAATTATCTAATTCAGCATCGCTTTGTCACATCTATCTCTGAGCAGGTGTCTCAATTTGCGCAAGGTTTTACTGATATTCTATGTAGCTCAAGGCTCCAGAGTTTCTTTTTCCGAACTTTAGAACTAGAAGATCTTGATTGGATGCTGCACGGAAGTGAAAGTGCTATTAGTGTTGACGATTGGAAGGCTCATACTGAGTACAATGGCTACAAAGAGACCGATCCTCAAATACTTTGGTTCTGGCAGATTGTCGGGGAGATGTCCGCAGAGCAGAAAAAGGTTCTTCTCTTCTTTTGGACCTCTGTGAAGTATCTTCCAGTTGAGGGGTTTAGTGGTTTGGCCTCTCGGCTTTACATTTACAAGTCCTCAGAGCCGTACAGCCGTCTGCCTTCGTCTCATACATGCTTTTACCGGTTGTGTTTCCCAACTTATCCATCTATGGCTGTCATGCAAGACCGCCTTAACATCATCACCCAAGAACATGTTGGCAGTAGCTTTGGGACATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

918

Amino Acids

103.56

Weight (kDa)

5.63

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2278
Acc16I	TGCGCA	1 cut(s)	2304
Acc36I	ACCTGC	1 cut(s)	2278
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	718, 2017
AccI	GTMKAC	2 cut(s)	350, 1459
AccII	CGCG	4 cut(s)	89, 917, 1722, 1724
AclWI	GGATC	5 cut(s)	102, 1904, 1917, 2057, 2459
AcoI	YGGCCR	3 cut(s)	540, 720, 1942
AcsI	RAATTY	3 cut(s)	1024, 1452, 1760
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	3 cut(s)	174, 249, 564
AfaI	GTAC	8 cut(s)	195, 716, 977, 1207, 1712, 1794, 2444, 2621
AflIII	ACRYGT	2 cut(s)	196, 2725
AgeI	ACCGGT	1 cut(s)	2655
AgsI	TTSAA	4 cut(s)	1069, 1255, 1438, 1765
AjiI	CACGTC	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	2397
AluBI	AGCT	9 cut(s)	520, 1096, 1300, 1660, 1778, 1961, 2188, 2331, 2739
AluI	AGCT	9 cut(s)	520, 1096, 1300, 1660, 1778, 1961, 2188, 2331, 2739
Alw21I	GWGCWC	2 cut(s)	551, 1528
Alw26I	GTCTC	5 cut(s)	1608, 1689, 2298, 2453, 2643
Alw44I	GTGCAC	1 cut(s)	1524
AlwI	GGATC	5 cut(s)	102, 1904, 1917, 2057, 2459
AlwNI	CAGNNNCTG	3 cut(s)	538, 1426, 2017
Ama87I	CYCGRG	3 cut(s)	344, 360, 1922
AoxI	GGCC	9 cut(s)	146, 420, 540, 720, 786, 1154, 1824, 1942, 2583
ApaI	GGGCCC	1 cut(s)	150
ApaLI	GTGCAC	1 cut(s)	1524
ApeKI	GCWGC	5 cut(s)	54, 448, 1219, 1660, 2389
ApoI	RAATTY	3 cut(s)	1024, 1452, 1760
AsiGI	ACCGGT	1 cut(s)	2655
Asp700I	GAANNNNTTC	2 cut(s)	672, 1513
AspS9I	GGNCC	8 cut(s)	146, 147, 357, 787, 967, 1235, 1784, 2541
AsuC2I	CCSGG	2 cut(s)	13, 1946
AsuHPI	GGTGA	7 cut(s)	463, 631, 677, 1406, 1924, 1960, 2707
AvaI	CYCGRG	3 cut(s)	344, 360, 1922
AvaII	GGWCC	5 cut(s)	357, 967, 1235, 1784, 2541
AxyI	CCTNAGG	1 cut(s)	271
BaeGI	GKGCMC	2 cut(s)	150, 1528
BalI	TGGCCA	1 cut(s)	722
BamHI	GGATCC	1 cut(s)	1909
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	3 cut(s)	20, 150, 222
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	3 cut(s)	763, 1653, 2052
Bbv12I	GWGCWC	2 cut(s)	551, 1528
BbvI	GCAGC	5 cut(s)	66, 435, 1231, 1647, 2376
BccI	CCATC	6 cut(s)	14, 560, 691, 768, 1407, 2686
BceAI	ACGGC	7 cut(s)	62, 161, 212, 262, 343, 2602, 2610
BcgI	CGANNNNNNTGC	2 cut(s)	2087, 2121
BclI	TGATCA	1 cut(s)	1870
BcnI	CCSGG	2 cut(s)	13, 1946
BcoDI	GTCTC	5 cut(s)	1608, 1689, 2298, 2453, 2643
BfaI	CTAG	2 cut(s)	191, 2369
BfmI	CTRYAG	3 cut(s)	921, 1209, 1779
BfoI	RGCGCY	3 cut(s)	252, 589, 996
BfuAI	ACCTGC	1 cut(s)	2278
BglI	GCCNNNNNGGC	1 cut(s)	794
BglII	AGATCT	1 cut(s)	2374
BmcAI	AGTACT	1 cut(s)	716
Bme18I	GGWCC	5 cut(s)	357, 967, 1235, 1784, 2541
BmeT110I	CYCGRG	3 cut(s)	344, 360, 1922
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	8 cut(s)	146, 147, 357, 787, 967, 1235, 1784, 2541
BpiI	GAAGAC	3 cut(s)	763, 1653, 2052
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpmI	CTGGAG	3 cut(s)	647, 749, 2324
BpuEI	CTTGAG	2 cut(s)	1472, 2317
BpuMI	CCSGG	2 cut(s)	13, 1946
BsaBI	GATNNNNATC	1 cut(s)	2061
BsaHI	GRCGYC	3 cut(s)	174, 249, 564
BsaI	GGTCTC	2 cut(s)	1689, 2453
BsaWI	WCCGGW	2 cut(s)	481, 2655
Bse118I	RCCGGY	2 cut(s)	473, 2655
Bse1I	ACTGG	6 cut(s)	543, 567, 582, 712, 2022, 2561
Bse21I	CCTNAGG	1 cut(s)	271
Bse3DI	GCAATG	2 cut(s)	1626, 1736
Bse8I	GATNNNNATC	1 cut(s)	2061
BseJI	GATNNNNATC	1 cut(s)	2061
BseMI	GCAATG	2 cut(s)	1626, 1736
BseMII	CTCAG	8 cut(s)	285, 743, 1118, 1490, 1722, 2274, 2430, 2625
BseNI	ACTGG	6 cut(s)	543, 567, 582, 712, 2022, 2561
BsePI	GCGCGC	1 cut(s)	915
BseRI	GAGGAG	3 cut(s)	259, 1670, 2174
BseSI	GKGCMC	2 cut(s)	150, 1528
BseXI	GCAGC	5 cut(s)	66, 435, 1231, 1647, 2376
BseYI	CCCAGC	1 cut(s)	1373
BsgI	GTGCAG	3 cut(s)	434, 1901, 2375
Bsh1236I	CGCG	4 cut(s)	89, 917, 1722, 1724
Bsh1285I	CGRYCG	2 cut(s)	317, 843
BshFI	GGCC	9 cut(s)	148, 422, 542, 722, 788, 1156, 1826, 1944, 2585
BshNI	GGYRCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	2655
BsiEI	CGRYCG	2 cut(s)	317, 843
BsiHKAI	GWGCWC	2 cut(s)	551, 1528
BsiHKCI	CYCGRG	3 cut(s)	344, 360, 1922
BsiSI	CCGG	7 cut(s)	12, 474, 482, 703, 988, 1945, 2656
BslFI	GGGAC	2 cut(s)	343, 761
BsmAI	GTCTC	5 cut(s)	1608, 1689, 2298, 2453, 2643
BsmBI	CGTCTC	1 cut(s)	2643
BsmFI	GGGAC	2 cut(s)	343, 761
BsmI	GAATGC	3 cut(s)	477, 1187, 1349
BsnI	GGCC	9 cut(s)	148, 422, 542, 722, 788, 1156, 1826, 1944, 2585
Bso31I	GGTCTC	2 cut(s)	1689, 2453
BsoBI	CYCGRG	3 cut(s)	344, 360, 1922
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	5 cut(s)	20, 150, 222, 551, 1528
Bsp19I	CCATGG	1 cut(s)	723
BspANI	GGCC	9 cut(s)	148, 422, 542, 722, 788, 1156, 1826, 1944, 2585
BspCNI	CTCAG	8 cut(s)	284, 742, 1119, 1491, 1723, 2275, 2431, 2624
BspFNI	CGCG	4 cut(s)	89, 917, 1722, 1724
BspHI	TCATGA	1 cut(s)	1867
BspMAI	CTGCAG	1 cut(s)	1213
BspMI	ACCTGC	1 cut(s)	2278
BspPI	GGATC	5 cut(s)	102, 1904, 1917, 2057, 2459
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	2 cut(s)	1689, 2453
BsrDI	GCAATG	2 cut(s)	1626, 1736
BsrFI	RCCGGY	2 cut(s)	473, 2655
BsrI	ACTGG	6 cut(s)	543, 567, 582, 712, 2022, 2561
BssAI	RCCGGY	2 cut(s)	473, 2655
BssHII	GCGCGC	1 cut(s)	915
BssNAI	GTATAC	1 cut(s)	1460
BssNI	GRCGYC	3 cut(s)	174, 249, 564
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	4 cut(s)	723, 792, 997, 1348
Bst1107I	GTATAC	1 cut(s)	1460
Bst2BI	CACGAG	1 cut(s)	452
Bst4CI	ACNGT	7 cut(s)	34, 439, 841, 984, 1422, 1745, 2182
Bst6I	CTCTTC	3 cut(s)	828, 1284, 2537
BstACI	GRCGYC	3 cut(s)	174, 249, 564
BstAPI	GCANNNNNTGC	2 cut(s)	1669, 1975
BstC8I	GCNNGC	8 cut(s)	146, 590, 917, 1098, 1154, 1861, 1942, 2087
BstDSI	CCRYGG	2 cut(s)	87, 723
BstFNI	CGCG	4 cut(s)	89, 917, 1722, 1724
BstH2I	RGCGCY	3 cut(s)	252, 589, 996
BstMAI	GTCTC	5 cut(s)	1608, 1689, 2298, 2453, 2643
BstMCI	CGRYCG	2 cut(s)	317, 843
BstNSI	RCATGY	3 cut(s)	1863, 2649, 2729
BstSFI	CTRYAG	3 cut(s)	921, 1209, 1779
BstSLI	GKGCMC	2 cut(s)	150, 1528
BstUI	CGCG	4 cut(s)	89, 917, 1722, 1724
BstV1I	GCAGC	5 cut(s)	66, 435, 1231, 1647, 2376
BstV2I	GAAGAC	3 cut(s)	763, 1653, 2052
BstX2I	RGATCY	2 cut(s)	1909, 2374
BstYI	RGATCY	2 cut(s)	1909, 2374
BstZ17I	GTATAC	1 cut(s)	1460
Bsu36I	CCTNAGG	1 cut(s)	271
BsuRI	GGCC	9 cut(s)	148, 422, 542, 722, 788, 1156, 1826, 1944, 2585
BtgI	CCRYGG	2 cut(s)	87, 723
BtgZI	GCGATG	1 cut(s)	2246
BtrI	CACGTC	1 cut(s)	199
BtsI	GCAGTG	2 cut(s)	797, 910
BtsIMutI	CAGTG	5 cut(s)	530, 536, 797, 910, 1571
BveI	ACCTGC	1 cut(s)	2278
Cac8I	GCNNGC	8 cut(s)	146, 590, 917, 1098, 1154, 1861, 1942, 2087
CaiI	CAGNNNCTG	3 cut(s)	538, 1426, 2017
CciI	TCATGA	1 cut(s)	1867
Cfr10I	RCCGGY	2 cut(s)	473, 2655
Cfr13I	GGNCC	8 cut(s)	146, 147, 357, 787, 967, 1235, 1784, 2541
Cfr42I	CCGCGG	1 cut(s)	90
CseI	GACGC	3 cut(s)	182, 572, 1728
Csp6I	GTAC	8 cut(s)	194, 715, 976, 1206, 1711, 1793, 2443, 2620
CspAI	ACCGGT	1 cut(s)	2655
CviQI	GTAC	8 cut(s)	194, 715, 976, 1206, 1711, 1793, 2443, 2620
DinI	GGCGCC	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	540, 720, 1942
Eam1104I	CTCTTC	3 cut(s)	828, 1284, 2537
EarI	CTCTTC	3 cut(s)	828, 1284, 2537
Eco130I	CCWWGG	4 cut(s)	723, 792, 997, 1348
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	3 cut(s)	20, 150, 222
Eco31I	GGTCTC	2 cut(s)	1689, 2453
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	5 cut(s)	357, 967, 1235, 1784, 2541
Eco57I	CTGAAG	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	271
Eco88I	CYCGRG	3 cut(s)	344, 360, 1922
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	1760
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	4 cut(s)	723, 792, 997, 1348
EcoT22I	ATGCAT	1 cut(s)	1971
EcoT38I	GRGCYC	3 cut(s)	20, 150, 222
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	4 cut(s)	723, 792, 997, 1348
Esp3I	CGTCTC	1 cut(s)	2643
FaqI	GGGAC	2 cut(s)	343, 761
FauI	CCCGC	2 cut(s)	137, 1791
FbaI	TGATCA	1 cut(s)	1870
FblI	GTMKAC	2 cut(s)	350, 1459
FriOI	GRGCYC	3 cut(s)	20, 150, 222
FspBI	CTAG	2 cut(s)	191, 2369
FspI	TGCGCA	1 cut(s)	2304
GsaI	CCCAGC	1 cut(s)	1377
GsuI	CTGGAG	3 cut(s)	647, 749, 2324
HaeII	RGCGCY	3 cut(s)	252, 589, 996
HaeIII	GGCC	9 cut(s)	148, 422, 542, 722, 788, 1156, 1826, 1944, 2585
HapII	CCGG	7 cut(s)	12, 474, 482, 703, 988, 1945, 2656
HgaI	GACGC	3 cut(s)	182, 572, 1728
Hin1I	GRCGYC	3 cut(s)	174, 249, 564
HincII	GTYRAC	2 cut(s)	351, 2419
HindII	GTYRAC	2 cut(s)	351, 2419
HpaII	CCGG	7 cut(s)	12, 474, 482, 703, 988, 1945, 2656
HphI	GGTGA	7 cut(s)	463, 631, 677, 1406, 1924, 1960, 2707
Hpy166II	GTNNAC	9 cut(s)	196, 336, 351, 676, 1460, 1526, 1793, 2218, 2419
Hpy188III	TCNNGA	9 cut(s)	360, 431, 677, 697, 1410, 1489, 1868, 2341, 2378
Hpy8I	GTNNAC	9 cut(s)	196, 336, 351, 676, 1460, 1526, 1793, 2218, 2419
Hpy99I	CGWCG	8 cut(s)	38, 83, 164, 167, 176, 233, 241, 566
HpyCH4III	ACNGT	7 cut(s)	34, 439, 841, 984, 1422, 1745, 2182
HpyCH4IV	ACGT	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	3 cut(s)	174, 249, 564
KasI	GGCGCC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	1870
KspI	CCGCGG	1 cut(s)	90
Lsp1109I	GCAGC	5 cut(s)	66, 435, 1231, 1647, 2376
MaeI	CTAG	2 cut(s)	191, 2369
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	8 cut(s)	534, 637, 830, 1122, 1307, 1416, 1553, 2269
MfeI	CAATTG	1 cut(s)	1688
MflI	RGATCY	2 cut(s)	1909, 2374
MhlI	GDGCHC	5 cut(s)	20, 150, 222, 551, 1528
MlsI	TGGCCA	1 cut(s)	722
MluNI	TGGCCA	1 cut(s)	722
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	6 cut(s)	341, 346, 356, 740, 1610, 1742
MmeI	TCCRAC	5 cut(s)	183, 267, 990, 1000, 1143
Mox20I	TGGCCA	1 cut(s)	722
Mph1103I	ATGCAT	1 cut(s)	1971
MroXI	GAANNNNTTC	2 cut(s)	672, 1513
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	5 cut(s)	1182, 1641, 1833, 2244, 2706
MslI	CAYNNNNRTG	1 cut(s)	2397
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	7 cut(s)	12, 474, 482, 703, 988, 1945, 2656
MunI	CAATTG	1 cut(s)	1688
Mva1269I	GAATGC	3 cut(s)	477, 1187, 1349
MvnI	CGCG	4 cut(s)	89, 917, 1722, 1724
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	13, 1946
NcoI	CCATGG	1 cut(s)	723
NmeAIII	GCCGAG	5 cut(s)	568, 686, 764, 2134, 2569
NmuCI	GTSAC	6 cut(s)	534, 637, 1307, 1416, 1553, 2269
NsbI	TGCGCA	1 cut(s)	2304
NsiI	ATGCAT	1 cut(s)	1971
NspI	RCATGY	3 cut(s)	1863, 2649, 2729
OliI	CACNNNNGTG	1 cut(s)	2397
PaeI	GCATGC	1 cut(s)	1863
PaeR7I	CTCGAG	1 cut(s)	1922
PagI	TCATGA	1 cut(s)	1867
PaqCI	CACCTGC	1 cut(s)	2278
PauI	GCGCGC	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	422
PciI	ACATGT	1 cut(s)	2725
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 658
PctI	GAATGC	3 cut(s)	477, 1187, 1349
PdmI	GAANNNNTTC	2 cut(s)	672, 1513
PfeI	GAWTC	4 cut(s)	233, 1034, 1700, 2120
PflFI	GACNNNGTC	2 cut(s)	355, 635
PflMI	CCANNNNNTGG	2 cut(s)	718, 2017
PfoI	TCCNGGA	1 cut(s)	624
PinAI	ACCGGT	1 cut(s)	2655
Ple19I	CGATCG	1 cut(s)	317
PleI	GAGTC	6 cut(s)	340, 346, 355, 740, 1609, 1741
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	6 cut(s)	340, 346, 355, 740, 1609, 1741
PpuMI	RGGWCCY	1 cut(s)	967
PscI	ACATGT	1 cut(s)	2725
Psp5II	RGGWCCY	1 cut(s)	967
PspFI	CCCAGC	1 cut(s)	1373
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	8 cut(s)	146, 147, 357, 787, 967, 1235, 1784, 2541
PspPPI	RGGWCCY	1 cut(s)	967
PspXI	VCTCGAGB	1 cut(s)	1922
PstI	CTGCAG	1 cut(s)	1213
PstNI	CAGNNNCTG	3 cut(s)	538, 1426, 2017
PsuI	RGATCY	2 cut(s)	1909, 2374
PsyI	GACNNNGTC	2 cut(s)	355, 635
PteI	GCGCGC	1 cut(s)	915
PvuI	CGATCG	1 cut(s)	317
RsaI	GTAC	8 cut(s)	195, 716, 977, 1207, 1712, 1794, 2444, 2621
RsaNI	GTAC	8 cut(s)	194, 715, 976, 1206, 1711, 1793, 2443, 2620
RseI	CAYNNNNRTG	1 cut(s)	2397
SacII	CCGCGG	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	349
SaqAI	TTAA	5 cut(s)	1182, 1641, 1833, 2244, 2706
Sau96I	GGNCC	8 cut(s)	146, 147, 357, 787, 967, 1235, 1784, 2541
ScaI	AGTACT	1 cut(s)	716
SchI	GAGTC	6 cut(s)	341, 346, 356, 740, 1610, 1742
SduI	GDGCHC	5 cut(s)	20, 150, 222, 551, 1528
SfcI	CTRYAG	3 cut(s)	921, 1209, 1779
SfoI	GGCGCC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	1922
Sfr303I	CCGCGG	1 cut(s)	90
SgrBI	CCGCGG	1 cut(s)	90
SinI	GGWCC	5 cut(s)	357, 967, 1235, 1784, 2541
SlaI	CTCGAG	1 cut(s)	1922
SmiMI	CAYNNNNRTG	1 cut(s)	2397
SmlI	CTYRAG	3 cut(s)	1487, 1922, 2332
SmoI	CTYRAG	3 cut(s)	1487, 1922, 2332
SphI	GCATGC	1 cut(s)	1863
SseBI	AGGCCT	1 cut(s)	422
SspDI	GGCGCC	1 cut(s)	248
SspI	AATATT	1 cut(s)	1495
SspMI	CTAG	2 cut(s)	191, 2369
StuI	AGGCCT	1 cut(s)	422
StyI	CCWWGG	4 cut(s)	723, 792, 997, 1348
TaaI	ACNGT	7 cut(s)	34, 439, 841, 984, 1422, 1745, 2182
TaiI	ACGT	1 cut(s)	201
TaqII	GACCGA	3 cut(s)	345, 1223, 2477
TatI	WGTACW	5 cut(s)	193, 714, 1710, 1792, 2442
TauI	GCSGC	5 cut(s)	77, 86, 89, 254, 1476
TfiI	GAWTC	4 cut(s)	233, 1034, 1700, 2120
Tru1I	TTAA	5 cut(s)	1182, 1641, 1833, 2244, 2706
Tru9I	TTAA	5 cut(s)	1182, 1641, 1833, 2244, 2706
TscAI	CASTG	5 cut(s)	530, 543, 804, 917, 1571
TseFI	GTSAC	6 cut(s)	534, 637, 1307, 1416, 1553, 2269
TseI	GCWGC	5 cut(s)	54, 448, 1219, 1660, 2389
Tsp45I	GTSAC	6 cut(s)	534, 637, 1307, 1416, 1553, 2269
TspDTI	ATGAA	3 cut(s)	370, 1356, 1394
TspGWI	ACGGA	2 cut(s)	2055, 2409
TspRI	CASTG	5 cut(s)	530, 543, 804, 917, 1571
Tth111I	GACNNNGTC	2 cut(s)	355, 635
Van91I	CCANNNNNTGG	2 cut(s)	718, 2017
VneI	GTGCAC	1 cut(s)	1524
VpaK11BI	GGWCC	5 cut(s)	357, 967, 1235, 1784, 2541
XapI	RAATTY	3 cut(s)	1024, 1452, 1760
XceI	RCATGY	3 cut(s)	1863, 2649, 2729
XcmI	CCANNNNNNNNNTGG	4 cut(s)	574, 2018, 2179, 2726
XhoI	CTCGAG	1 cut(s)	1922
XmiI	GTMKAC	2 cut(s)	350, 1459
XmnI	GAANNNNTTC	2 cut(s)	672, 1513
XspI	CTAG	2 cut(s)	191, 2369
ZrmI	AGTACT	1 cut(s)	716
Zsp2I	ATGCAT	1 cut(s)	1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.