Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

764284 .. 770373

Gene Structure 6090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG011200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGTCCGGCAACATCCCCGTCGGCGATTGGGCGGCGCACCAGCGCGGCAGCGGGAGCGACAACAGCGCGGGCGTGGCAGTGGCCGCGGCGGCGCGACTGTCGTCGAAGCGGAAACTGGACGAGTATGGCGGCCTCTCGACGTTCTCGGACGACGAGGACGACGCCGTCGTTTCTGACCTAGTCCACGTCAGAATGAGGAAGGACGAGCCCAACGCCGTCGATTCGTCCTCCAACAACGGCGCAGCGGCGACGCAGCCTCAGTCGTCCCACCTCAATTCCAATTCGCGAGTCTCCAACGCCGCCCGATCGGCCTCCTCCCGCGCCGAGTCCACTCGCCACGAGTTGACTCGGTCCTGGCCGATGCTCCAATTCTTCATCAAAACGATCTCCGGCGGCAACACTCTGGTAATCCAGGCCCACGCGCACGATTCCGTCAAGACGCTCCACGAGCGCATAGAGGCGATAACCCGCATTCCGGCGACGGAGCAGAGGCTCATTTACAGAGGGAAGCAGCTCCAGTGGGAACAGTCCCTGGCCCAGTGCTCAATCCAAAACGACGCCAGCTTGCAGCTCGTCGGCCGCCTCCGGAGCACTCACCATCCTCAGGCCTGGCAGGTCCTGGAGGACTTGGTCTCGGTTTCGTTTCGGCTCTGCCGCAGCGAAAAGGTGCACGAGCCATTGAAGTACATCAAGAGCCGCCTCAGCCAGTACTTGGCAATGGCTCAGAAGGAGAAGACGGAGGACTCTGGAGCTAGCCATATGCAGGTGTTTATACCCTCCTCGGCGCCATTGTCATTGTTCATGCTCTACAATTCGCCGGTTGCAGGTAACAAAGACATTGCAGAAGAGTCGATTAAGTATTTCCTGAATTCATATGCTACATTGTTGCCCAAAAACTTGCATAATCACTGCGCACCGATAGTGTTAGAGTTCTGTAAGTTTCTGAGAAGAGTAGGGCAGGAGGACCCTCTGTACATCTTGTGCAGGAGTGCTCTAGGTTCGTTTTGGGAGAATGCTGGGGGTTTGCAGGACTCAGAGTGTGTTGATCAGTTGGTTAGGTTGAAGGAGATTTACCCGTTTCTCACTGAGGTGGCAAATAGTTTGTCTAAGGATTTGGAGCTGAGTATGGAGTCGCCTGGGAGTCTTAGGCCGTTGTTGGATGATGTGCGTGATTTTAAGGCATTCTTGCTCCCCATGCGTACTGCAATTGCCAAAGAAGTGTATTATACGGGTCCCATTTGTGCATCCTCGAAAGCACAGGCTGCTAAGTACCCGGTGTTTGGGGAAGAGATTGAGCTTCTTCGTAGTATACTTGCTGATTTGCTGAAAAGAATGGCTGAGTGCCTTACCAAAGTGGTAGAGTGCTTGACTGGGAAAGGAAAGGGGGACAGTGATATTGTTCATTCTGGATGGTCTCAGTATCTTGCTGTTTTGAAGGAACTACATGGGATTTGTAAACTCTATCGGGGTGGGGAAGAACAATTTTGGACGACTCTGAGGCTTAGAAAGACTGCAATATGTGCACTAGTTGTGAAATATGCAAAGCGAAGTGACGATCATCAGTGGCTTCTTGAGCACAAAGATGTACTTGATTTCGAGTCTCGAAGGCATTTGGCTATGATGATGTTCCCTGATGTTAAAGAAGACTATGAGGAGTTACATGAGATGCTGATTGATAGGTCTCAGTTATTGTCAGAATCATTTGCATACATAGGAAGTGCAGAACCCGAGTCACTGCATGCTGGATTATTTATGGAATTTAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGGGAATGGTTCTTTTTGGTATGCCAGGACATATTTAATCCACAAAATGCACTTTTTGTGGCATGCCCTAATGACCGGAGACGATTCTATCCTAATCCAGCATCTAAGGTGGATCCTATGCATCTCGATTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTAATGCATAAAGTGCAAGTGGGCATAGTCTTTGACCGTATATTTTTCCAACAGTTGGCTGGAACTTTACCATCTTTGGAAGACATACGGGATGCTGATCCTTACTTGTATAATAGTTGCAAGCAGATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTGGGATTGACATTTGTTAGAGAAGTGGAGGAGTTGGGATCCAGGAAAACTGTTGAGCTTCGCACTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAAACTTCTTATTAAGCATCGGTTTGTCATATCTATCACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTCTCCAACTCAGTGCTCCAGACTTTCTTTTTCCGAAGTTTAGAGCTAGAAGATCTTGATTGGATGCTACATGGAAGTGAAAGTGCTATTAGTGTTGAAGACTGGAAGGCACATACTGAGTACAATGGCTACAAAGAGACTGATACTCAAATATCTTGGTTCTGGAAGGTATATATATACTCTCTAGCTTCTGGTCTTACAAACATGACTGCTAGCCTCGGTATTTCCTCCTTTTATTTATTTTTTCAGTTTCTTTCACTACTTGAGTGCATAAAGCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

866

Amino Acids

97.95

Weight (kDa)

6.02

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	125 - 196	5.5e-16	Ubiquitin family
HECT	PF00632	604 - 829	1.7e-51	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	754
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	913
Acc36I	ACCTGC	3 cut(s)	604, 754, 815
AccB1I	GGYRCC	1 cut(s)	784
AccB7I	CCANNNNNTGG	2 cut(s)	712, 2014
AccI	GTMKAC	1 cut(s)	1309
AccII	CGCG	7 cut(s)	45, 68, 86, 94, 286, 321, 422
AccIII	TCCGGA	1 cut(s)	585
AclWI	GGATC	7 cut(s)	1901, 1914, 2051, 2093, 2106, 2157, 2170
AcoI	YGGCCR	4 cut(s)	81, 356, 577, 1939
AcsI	RAATTY	2 cut(s)	868, 1757
AcyI	GRCGYC	3 cut(s)	162, 558, 785
AfaI	GTAC	8 cut(s)	686, 710, 974, 1201, 1271, 1587, 1791, 2438
AfiI	CCNNNNNNNGG	7 cut(s)	475, 604, 712, 763, 824, 1280, 2014
AgsI	TTSAA	4 cut(s)	682, 1063, 1435, 2414
AhlI	ACTAGT	1 cut(s)	1525
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	9 cut(s)	353, 411, 531, 608, 618, 1135, 1783, 1818, 2165
AleI	CACNNNNGTG	1 cut(s)	1088
Alw21I	GWGCWC	7 cut(s)	545, 593, 672, 994, 1525, 1578, 2334
Alw26I	GTCTC	7 cut(s)	295, 637, 1419, 1605, 1686, 1867, 2447
Alw44I	GTGCAC	2 cut(s)	668, 1521
AlwI	GGATC	7 cut(s)	1901, 1914, 2051, 2093, 2106, 2157, 2170
AlwNI	CAGNNNCTG	3 cut(s)	532, 619, 2089
Ama87I	CYCGRG	1 cut(s)	1727
Aor13HI	TCCGGA	1 cut(s)	585
ApaLI	GTGCAC	2 cut(s)	668, 1521
ApeKI	GCWGC	7 cut(s)	48, 242, 253, 511, 568, 657, 1262
ApoI	RAATTY	2 cut(s)	868, 1757
ArsI	GACNNNNNNTTYG	2 cut(s)	1088, 1120
AspS9I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1232, 1781
AsuC2I	CCSGG	2 cut(s)	1274, 1943
AsuHPI	GGTGA	4 cut(s)	587, 1921, 1957, 2321
AsuNHI	GCTAGC	2 cut(s)	752, 2528
AvaI	CYCGRG	1 cut(s)	1727
AvaII	GGWCC	5 cut(s)	351, 616, 964, 1232, 1781
AxyI	CCTNAGG	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	672, 1525
BamHI	GGATCC	3 cut(s)	1906, 2098, 2162
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	1055, 1087
BauI	CACGAG	3 cut(s)	338, 446, 671
BbsI	GAAGAC	4 cut(s)	740, 1650, 2046, 2421
Bbv12I	GWGCWC	7 cut(s)	545, 593, 672, 994, 1525, 1578, 2334
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	7 cut(s)	60, 254, 265, 523, 580, 669, 1249
BccI	CCATC	3 cut(s)	606, 1404, 2038
BceAI	ACGGC	4 cut(s)	149, 200, 253, 1135
BcgI	CGANNNNNNTGC	2 cut(s)	831, 865
BciT130I	CCWGG	9 cut(s)	355, 413, 533, 610, 620, 1137, 1785, 1820, 2167
BclI	TGATCA	1 cut(s)	1045
BcnI	CCSGG	2 cut(s)	1274, 1943
BcoDI	GTCTC	7 cut(s)	295, 637, 1419, 1605, 1686, 1867, 2447
BcuI	ACTAGT	1 cut(s)	1525
BfaI	CTAG	7 cut(s)	179, 753, 995, 1526, 2363, 2501, 2529
BfmI	CTRYAG	1 cut(s)	1776
BfoI	RGCGCY	1 cut(s)	788
BfuAI	ACCTGC	3 cut(s)	604, 754, 815
BglI	GCCNNNNNGGC	2 cut(s)	89, 308
BglII	AGATCT	1 cut(s)	2368
BmcAI	AGTACT	1 cut(s)	710
Bme18I	GGWCC	5 cut(s)	351, 616, 964, 1232, 1781
BmeT110I	CYCGRG	1 cut(s)	1727
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1232, 1781
BmiI	GGNNCC	7 cut(s)	786, 966, 1233, 1234, 1908, 2100, 2164
BmrI	ACTGGG	2 cut(s)	532, 1380
BmsI	GCATC	9 cut(s)	351, 1253, 1656, 1904, 1924, 2041, 2110, 2263, 2370
BmtI	GCTAGC	2 cut(s)	756, 2532
BmuI	ACTGGG	2 cut(s)	532, 1380
BoxI	GACNNNNGTC	1 cut(s)	100
BpiI	GAAGAC	4 cut(s)	740, 1650, 2046, 2421
BpmI	CTGGAG	4 cut(s)	500, 641, 768, 2318
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	2 cut(s)	1592, 2600
BpuMI	CCSGG	2 cut(s)	1274, 1943
BsaBI	GATNNNNATC	1 cut(s)	2055
BsaHI	GRCGYC	3 cut(s)	162, 558, 785
BsaI	GGTCTC	3 cut(s)	637, 1419, 1686
BsaJI	CCNNGG	5 cut(s)	84, 531, 780, 1136, 2533
BsaWI	WCCGGW	2 cut(s)	585, 1869
Bsc4I	CCNNNNNNNGG	7 cut(s)	475, 604, 712, 763, 824, 1280, 2014
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	7 cut(s)	120, 517, 538, 706, 1375, 2194, 2423
Bse21I	CCTNAGG	1 cut(s)	603
Bse3DI	GCAATG	2 cut(s)	723, 837
Bse8I	GATNNNNATC	1 cut(s)	2055
BseAI	TCCGGA	1 cut(s)	585
BseBI	CCWGG	9 cut(s)	355, 413, 533, 610, 620, 1137, 1785, 1820, 2167
BseDI	CCNNGG	5 cut(s)	84, 531, 780, 1136, 2533
BseGI	GGATG	7 cut(s)	12, 598, 1165, 1244, 1415, 2056, 2385
BseJI	GATNNNNATC	1 cut(s)	2055
BseLI	CCNNNNNNNGG	7 cut(s)	475, 604, 712, 763, 824, 1280, 2014
BseMI	GCAATG	2 cut(s)	723, 837
BseNI	ACTGG	7 cut(s)	120, 517, 538, 706, 1375, 2194, 2423
BseRI	GAGGAG	4 cut(s)	304, 769, 1667, 2168
BseSI	GKGCMC	2 cut(s)	672, 1525
BseX3I	CGGCCG	1 cut(s)	577
BseXI	GCAGC	7 cut(s)	60, 254, 265, 523, 580, 669, 1249
BseYI	CCCAGC	1 cut(s)	1016
BsgI	GTGCAG	2 cut(s)	1003, 1740
Bsh1236I	CGCG	7 cut(s)	45, 68, 86, 94, 286, 321, 422
Bsh1285I	CGRYCG	2 cut(s)	308, 580
BshNI	GGYRCC	1 cut(s)	784
BsiEI	CGRYCG	2 cut(s)	308, 580
BsiHKAI	GWGCWC	7 cut(s)	545, 593, 672, 994, 1525, 1578, 2334
BsiHKCI	CYCGRG	1 cut(s)	1727
BsiSI	CCGG	8 cut(s)	6, 390, 476, 586, 818, 1274, 1870, 1942
BslFI	GGGAC	4 cut(s)	250, 514, 1218, 1400
BslI	CCNNNNNNNGG	7 cut(s)	475, 604, 712, 763, 824, 1280, 2014
BsmAI	GTCTC	7 cut(s)	295, 637, 1419, 1605, 1686, 1867, 2447
BsmBI	CGTCTC	1 cut(s)	1867
BsmFI	GGGAC	4 cut(s)	250, 514, 1218, 1400
BsmI	GAATGC	3 cut(s)	471, 1018, 1181
Bso31I	GGTCTC	3 cut(s)	637, 1419, 1686
BsoBI	CYCGRG	1 cut(s)	1727
Bsp1286I	GDGCHC	8 cut(s)	210, 545, 593, 672, 994, 1525, 1578, 2334
Bsp13I	TCCGGA	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	972
Bsp143I	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
Bsp68I	TCGCGA	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	585
BspFNI	CGCG	7 cut(s)	45, 68, 86, 94, 286, 321, 422
BspLI	GGNNCC	7 cut(s)	786, 966, 1233, 1234, 1908, 2100, 2164
BspMI	ACCTGC	3 cut(s)	604, 754, 815
BspOI	GCTAGC	2 cut(s)	756, 2532
BspPI	GGATC	7 cut(s)	1901, 1914, 2051, 2093, 2106, 2157, 2170
BspT107I	GGYRCC	1 cut(s)	784
BspTNI	GGTCTC	3 cut(s)	637, 1419, 1686
BsrDI	GCAATG	2 cut(s)	723, 837
BsrFI	RCCGGY	1 cut(s)	817
BsrGI	TGTACA	1 cut(s)	972
BsrI	ACTGG	7 cut(s)	120, 517, 538, 706, 1375, 2194, 2423
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	5 cut(s)	84, 531, 780, 1136, 2533
BssMI	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
BssNAI	GTATAC	1 cut(s)	1310
BssNI	GRCGYC	3 cut(s)	162, 558, 785
BssSI	CACGAG	3 cut(s)	338, 446, 671
Bst1107I	GTATAC	1 cut(s)	1310
Bst2BI	CACGAG	3 cut(s)	338, 446, 671
Bst2UI	CCWGG	9 cut(s)	355, 413, 533, 610, 620, 1137, 1785, 1820, 2167
Bst4CI	ACNGT	6 cut(s)	99, 528, 1391, 1997, 2013, 2176
Bst6I	CTCTTC	3 cut(s)	840, 943, 1281
BstACI	GRCGYC	3 cut(s)	162, 558, 785
BstAPI	GCANNNNNTGC	3 cut(s)	1262, 1520, 1972
BstAUI	TGTACA	1 cut(s)	972
BstC8I	GCNNGC	9 cut(s)	70, 562, 566, 754, 1740, 1858, 1939, 2081, 2530
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	7 cut(s)	12, 598, 1165, 1244, 1415, 2056, 2385
BstFNI	CGCG	7 cut(s)	45, 68, 86, 94, 286, 321, 422
BstH2I	RGCGCY	1 cut(s)	788
BstKTI	GATC	9 cut(s)	308, 387, 1048, 1558, 1909, 2059, 2101, 2165, 2371
BstMAI	GTCTC	7 cut(s)	295, 637, 1419, 1605, 1686, 1867, 2447
BstMBI	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
BstMCI	CGRYCG	2 cut(s)	308, 580
BstNI	CCWGG	9 cut(s)	355, 413, 533, 610, 620, 1137, 1785, 1820, 2167
BstNSI	RCATGY	2 cut(s)	1742, 1860
BstPAI	GACNNNNGTC	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	1776
BstSLI	GKGCMC	2 cut(s)	672, 1525
BstUI	CGCG	7 cut(s)	45, 68, 86, 94, 286, 321, 422
BstV1I	GCAGC	7 cut(s)	60, 254, 265, 523, 580, 669, 1249
BstV2I	GAAGAC	4 cut(s)	740, 1650, 2046, 2421
BstX2I	RGATCY	4 cut(s)	1906, 2098, 2162, 2368
BstYI	RGATCY	4 cut(s)	1906, 2098, 2162, 2368
BstZ17I	GTATAC	1 cut(s)	1310
BstZI	CGGCCG	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	7 cut(s)	12, 598, 1165, 1244, 1415, 2056, 2385
BtsI	GCAGTG	3 cut(s)	84, 907, 1733
BtuMI	TCGCGA	1 cut(s)	286
BveI	ACCTGC	3 cut(s)	604, 754, 815
Cac8I	GCNNGC	9 cut(s)	70, 562, 566, 754, 1740, 1858, 1939, 2081, 2530
CaiI	CAGNNNCTG	3 cut(s)	532, 619, 2089
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1232, 1781
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	4 cut(s)	170, 259, 448, 566
Csp6I	GTAC	8 cut(s)	685, 709, 973, 1200, 1270, 1586, 1790, 2437
CviAII	CATG	8 cut(s)	802, 1195, 1445, 1661, 1739, 1857, 2387, 2521
CviQI	GTAC	8 cut(s)	685, 709, 973, 1200, 1270, 1586, 1790, 2437
DinI	GGCGCC	1 cut(s)	786
DpnI	GATC	9 cut(s)	307, 386, 1047, 1557, 1908, 2058, 2100, 2164, 2370
DpnII	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
DraI	TTTAAA	1 cut(s)	1762
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	4 cut(s)	81, 356, 577, 1939
EagI	CGGCCG	1 cut(s)	577
Eam1104I	CTCTTC	3 cut(s)	840, 943, 1281
EarI	CTCTTC	3 cut(s)	840, 943, 1281
EclXI	CGGCCG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	3 cut(s)	637, 1419, 1686
Eco47I	GGWCC	5 cut(s)	351, 616, 964, 1232, 1781
Eco52I	CGGCCG	1 cut(s)	577
Eco81I	CCTNAGG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	1727
EcoO109I	RGGNCCY	3 cut(s)	616, 964, 1232
EcoRI	GAATTC	1 cut(s)	868
EcoRII	CCWGG	9 cut(s)	353, 411, 531, 608, 618, 1135, 1783, 1818, 2165
EcoT22I	ATGCAT	2 cut(s)	1917, 1968
EcoT38I	GRGCYC	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	786
EheI	GGCGCC	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	1867
FaeI	CATG	8 cut(s)	805, 1198, 1448, 1664, 1742, 1860, 2390, 2524
FalI	AAGNNNNNCTT	4 cut(s)	1169, 1201, 1572, 1604
FaqI	GGGAC	4 cut(s)	250, 514, 1218, 1400
FatI	CATG	8 cut(s)	801, 1194, 1444, 1660, 1738, 1856, 2386, 2520
FauI	CCCGC	5 cut(s)	44, 61, 326, 476, 1788
FauNDI	CATATG	2 cut(s)	759, 874
FbaI	TGATCA	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	1309
FokI	GGATG	6 cut(s)	585, 1172, 1231, 1422, 2063, 2392
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	7 cut(s)	179, 753, 995, 1526, 2363, 2501, 2529
FspI	TGCGCA	1 cut(s)	913
GsaI	CCCAGC	1 cut(s)	1020
GsuI	CTGGAG	4 cut(s)	500, 641, 768, 2318
HaeII	RGCGCY	1 cut(s)	788
HapII	CCGG	8 cut(s)	6, 390, 476, 586, 818, 1274, 1870, 1942
HgaI	GACGC	4 cut(s)	170, 259, 448, 566
Hin1I	GRCGYC	3 cut(s)	162, 558, 785
Hin1II	CATG	8 cut(s)	805, 1198, 1448, 1664, 1742, 1860, 2390, 2524
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HpaII	CCGG	8 cut(s)	6, 390, 476, 586, 818, 1274, 1870, 1942
HphI	GGTGA	4 cut(s)	587, 1921, 1957, 2321
Hpy166II	GTNNAC	8 cut(s)	184, 330, 345, 670, 1310, 1457, 1523, 1790
Hpy8I	GTNNAC	8 cut(s)	184, 330, 345, 670, 1310, 1457, 1523, 1790
HpyAV	CCTTC	7 cut(s)	193, 721, 1057, 1429, 1599, 2416, 2476
HpyCH4III	ACNGT	6 cut(s)	99, 528, 1391, 1997, 2013, 2176
HpyCH4IV	ACGT	2 cut(s)	140, 186
HpySE526I	ACGT	2 cut(s)	140, 186
Hsp92I	GRCGYC	3 cut(s)	162, 558, 785
Hsp92II	CATG	8 cut(s)	805, 1198, 1448, 1664, 1742, 1860, 2390, 2524
KasI	GGCGCC	1 cut(s)	784
KflI	GGGWCCC	1 cut(s)	1232
Kpn2I	TCCGGA	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	1045
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
Lsp1109I	GCAGC	7 cut(s)	60, 254, 265, 523, 580, 669, 1249
LweI	GCATC	9 cut(s)	351, 1253, 1656, 1904, 1924, 2041, 2110, 2263, 2370
MaeI	CTAG	7 cut(s)	179, 753, 995, 1526, 2363, 2501, 2529
MaeII	ACGT	2 cut(s)	140, 186
MaeIII	GTNAC	5 cut(s)	827, 1550, 1656, 1731, 2209
MalI	GATC	9 cut(s)	307, 386, 1047, 1557, 1908, 2058, 2100, 2164, 2370
MboI	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
MfeI	CAATTG	1 cut(s)	1206
MflI	RGATCY	4 cut(s)	1906, 2098, 2162, 2368
MhlI	GDGCHC	8 cut(s)	210, 545, 593, 672, 994, 1525, 1578, 2334
MluCI	AATT	8 cut(s)	274, 280, 368, 811, 868, 1206, 1481, 1757
Mly113I	GGCGCC	1 cut(s)	785
MmeI	TCCRAC	5 cut(s)	255, 318, 1137, 2032, 2346
Mph1103I	ATGCAT	2 cut(s)	1917, 1968
MroI	TCCGGA	1 cut(s)	585
MseI	TTAA	8 cut(s)	855, 1176, 1638, 1761, 1830, 1961, 2238, 2250
MslI	CAYNNNNRTG	3 cut(s)	1088, 1581, 2391
MspA1I	CMGCKG	3 cut(s)	51, 86, 245
MspI	CCGG	8 cut(s)	6, 390, 476, 586, 818, 1274, 1870, 1942
MunI	CAATTG	1 cut(s)	1206
Mva1269I	GAATGC	3 cut(s)	471, 1018, 1181
MvaI	CCWGG	9 cut(s)	355, 413, 533, 610, 620, 1137, 1785, 1820, 2167
MvnI	CGCG	7 cut(s)	45, 68, 86, 94, 286, 321, 422
NarI	GGCGCC	1 cut(s)	785
NciI	CCSGG	2 cut(s)	1274, 1943
NdeI	CATATG	2 cut(s)	759, 874
NdeII	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
NheI	GCTAGC	2 cut(s)	752, 2528
NlaIII	CATG	8 cut(s)	805, 1198, 1448, 1664, 1742, 1860, 2390, 2524
NlaIV	GGNNCC	7 cut(s)	786, 966, 1233, 1234, 1908, 2100, 2164
NmeAIII	GCCGAG	2 cut(s)	349, 761
NmuCI	GTSAC	2 cut(s)	1550, 1731
NruI	TCGCGA	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	913
NsiI	ATGCAT	2 cut(s)	1917, 1968
NspI	RCATGY	2 cut(s)	1742, 1860
OliI	CACNNNNGTG	1 cut(s)	1088
PaeI	GCATGC	2 cut(s)	1742, 1860
PaqCI	CACCTGC	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PctI	GAATGC	3 cut(s)	471, 1018, 1181
PfeI	GAWTC	6 cut(s)	221, 428, 1697, 1878, 2086, 2114
PflFI	GACNNNGTC	4 cut(s)	164, 179, 349, 629
PflMI	CCANNNNNTGG	2 cut(s)	712, 2014
PfoI	TCCNGGA	2 cut(s)	618, 2165
Ple19I	CGATCG	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	788
PpuMI	RGGWCCY	3 cut(s)	616, 964, 1232
PshAI	GACNNNNGTC	1 cut(s)	100
Psp5II	RGGWCCY	3 cut(s)	616, 964, 1232
Psp6I	CCWGG	9 cut(s)	353, 411, 531, 608, 618, 1135, 1783, 1818, 2165
PspFI	CCCAGC	1 cut(s)	1016
PspGI	CCWGG	9 cut(s)	353, 411, 531, 608, 618, 1135, 1783, 1818, 2165
PspN4I	GGNNCC	7 cut(s)	786, 966, 1233, 1234, 1908, 2100, 2164
PspPI	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1232, 1781
PspPPI	RGGWCCY	3 cut(s)	616, 964, 1232
PstNI	CAGNNNCTG	3 cut(s)	532, 619, 2089
PsuI	RGATCY	4 cut(s)	1906, 2098, 2162, 2368
PsyI	GACNNNGTC	4 cut(s)	164, 179, 349, 629
PvuI	CGATCG	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	286
RsaI	GTAC	8 cut(s)	686, 710, 974, 1201, 1271, 1587, 1791, 2438
RsaNI	GTAC	8 cut(s)	685, 709, 973, 1200, 1270, 1586, 1790, 2437
RseI	CAYNNNNRTG	3 cut(s)	1088, 1581, 2391
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	8 cut(s)	855, 1176, 1638, 1761, 1830, 1961, 2238, 2250
Sau3AI	GATC	9 cut(s)	305, 384, 1045, 1555, 1906, 2056, 2098, 2162, 2368
Sau96I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1232, 1781
ScaI	AGTACT	1 cut(s)	710
SduI	GDGCHC	8 cut(s)	210, 545, 593, 672, 994, 1525, 1578, 2334
SfaNI	GCATC	9 cut(s)	351, 1253, 1656, 1904, 1924, 2041, 2110, 2263, 2370
SfcI	CTRYAG	1 cut(s)	1776
SfoI	GGCGCC	1 cut(s)	786
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	5 cut(s)	351, 616, 964, 1232, 1781
SmiMI	CAYNNNNRTG	3 cut(s)	1088, 1581, 2391
SmlI	CTYRAG	2 cut(s)	1571, 2579
SmoI	CTYRAG	2 cut(s)	1571, 2579
SpeI	ACTAGT	1 cut(s)	1525
SphI	GCATGC	2 cut(s)	1742, 1860
Sse9I	AATT	8 cut(s)	274, 280, 368, 811, 868, 1206, 1481, 1757
SseBI	AGGCCT	1 cut(s)	608
SspDI	GGCGCC	1 cut(s)	784
SspMI	CTAG	7 cut(s)	179, 753, 995, 1526, 2363, 2501, 2529
StuI	AGGCCT	1 cut(s)	608
TaaI	ACNGT	6 cut(s)	99, 528, 1391, 1997, 2013, 2176
TaiI	ACGT	2 cut(s)	143, 189
TaqI	TCGA	8 cut(s)	104, 137, 219, 851, 1250, 1596, 1603, 1920
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	8 cut(s)	274, 280, 368, 811, 868, 1206, 1481, 1757
TatI	WGTACW	6 cut(s)	684, 708, 972, 1585, 1789, 2436
TfiI	GAWTC	6 cut(s)	221, 428, 1697, 1878, 2086, 2114
Tru1I	TTAA	8 cut(s)	855, 1176, 1638, 1761, 1830, 1961, 2238, 2250
Tru9I	TTAA	8 cut(s)	855, 1176, 1638, 1761, 1830, 1961, 2238, 2250
TseFI	GTSAC	2 cut(s)	1550, 1731
TseI	GCWGC	7 cut(s)	48, 242, 253, 511, 568, 657, 1262
Tsp45I	GTSAC	2 cut(s)	1550, 1731
TspDTI	ATGAA	4 cut(s)	364, 790, 861, 1391
TspGWI	ACGGA	3 cut(s)	421, 497, 752
Tth111I	GACNNNGTC	4 cut(s)	164, 179, 349, 629
Van91I	CCANNNNNTGG	2 cut(s)	712, 2014
VneI	GTGCAC	2 cut(s)	668, 1521
VpaK11BI	GGWCC	5 cut(s)	351, 616, 964, 1232, 1781
XapI	RAATTY	2 cut(s)	868, 1757
XceI	RCATGY	2 cut(s)	1742, 1860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2015
XmiI	GTMKAC	1 cut(s)	1309
XspI	CTAG	7 cut(s)	179, 753, 995, 1526, 2363, 2501, 2529
ZrmI	AGTACT	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	1917, 1968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.