Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

749548 .. 751006

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATGATGTTCCCTGATGTTAAAGAAGACTATGAGGAGTTACATGAGATGCTGATTGATAGGTCTCAATTATTATCAGAATCATTTGCATACATAGGAAGTGCAGAACCCGAGTCACTGCATGCTGGATTATTTGTGGAATTTAAAAATGAGGAAGTTACAGGTCCAGGTGTACTGCGGGAATGGTTCTTTTTGGTATGCCAGGACATATTTAATCCACAAAATGCACTTTTTGTGTCATGCCCTAATGACCGGAGACGATTCTATCCTAATCCAGCATCTAAGGTGGATCCTATGCATCTCGATTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTAATGCATAAAGTGCAAGTGGGCATTGTCTTTGACCGTATATTTTTCCCACAGTTGGCTGGAACTTTACCATCTTTGGAAGACATACGGGATGCTGATCCTTACTTGTATAATAGTTGCAAGCAGATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTAGGATTGACATTTGTTAGAGAAGTGGAGGAGTTGGGATCCCGGAAAACTGTTGAGCTTTGCGCTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAAACTTCTTATTAAGCATCGGTTTATCATATCTATCACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTTTCCAACTCAGTGCTCCAGACTTTCTCTTTTCCGAAGTTTGGAGCTAGAAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

252

Amino Acids

28.85

Weight (kDa)

5.22

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	65 - 243	1.1e-40	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	7 cut(s)	284, 297, 434, 476, 489, 540, 553
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	397, 740
AjnI	CCWGG	2 cut(s)	166, 201
AluBI	AGCT	3 cut(s)	341, 565, 746
AluI	AGCT	3 cut(s)	341, 565, 746
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	69, 250
AlwI	GGATC	7 cut(s)	284, 297, 434, 476, 489, 540, 553
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	2 cut(s)	326, 550
AsuHPI	GGTGA	3 cut(s)	304, 340, 704
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	164
BamHI	GGATCC	3 cut(s)	289, 481, 545
BbsI	GAAGAC	2 cut(s)	33, 429
Bbv12I	GWGCWC	1 cut(s)	717
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	2 cut(s)	168, 203
BcnI	CCSGG	2 cut(s)	326, 550
BcoDI	GTCTC	2 cut(s)	69, 250
BfaI	CTAG	1 cut(s)	747
BglII	AGATCT	1 cut(s)	752
Bme1390I	CCNGG	4 cut(s)	168, 203, 326, 550
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	291, 483, 547
BmrFI	CCNGG	4 cut(s)	168, 203, 326, 550
BmsI	GCATC	6 cut(s)	39, 287, 307, 424, 493, 646
BpiI	GAAGAC	2 cut(s)	33, 429
BpmI	CTGGAG	1 cut(s)	701
BpuMI	CCSGG	2 cut(s)	326, 550
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 740
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	168, 203
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	397, 740
BseMII	CTCAG	1 cut(s)	723
BseRI	GAGGAG	2 cut(s)	50, 551
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	253, 325, 550
BslI	CCNNNNNNNGG	2 cut(s)	397, 740
BsmAI	GTCTC	2 cut(s)	69, 250
BsmBI	CGTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	5 cut(s)	289, 439, 481, 545, 752
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	722
BspLI	GGNNCC	3 cut(s)	291, 483, 547
BspPI	GGATC	7 cut(s)	284, 297, 434, 476, 489, 540, 553
BspTNI	GGTCTC	1 cut(s)	69
BssMI	GATC	5 cut(s)	289, 439, 481, 545, 752
Bst2UI	CCWGG	2 cut(s)	168, 203
Bst4CI	ACNGT	3 cut(s)	380, 396, 559
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	123, 322, 464
BstDEI	CTNAG	2 cut(s)	282, 709
BstF5I	GGATG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	5 cut(s)	292, 442, 484, 548, 755
BstMAI	GTCTC	2 cut(s)	69, 250
BstMBI	GATC	5 cut(s)	289, 439, 481, 545, 752
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	2 cut(s)	168, 203
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	4 cut(s)	166, 201, 324, 548
BstV2I	GAAGAC	2 cut(s)	33, 429
BstX2I	RGATCY	4 cut(s)	289, 481, 545, 752
BstYI	RGATCY	4 cut(s)	289, 481, 545, 752
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	3 cut(s)	116, 657, 717
Cac8I	GCNNGC	3 cut(s)	123, 322, 464
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	3 cut(s)	44, 122, 240
CviJI	RGCY	5 cut(s)	324, 341, 401, 565, 746
CviKI_1	RGCY	5 cut(s)	324, 341, 401, 565, 746
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	282, 709
DpnI	GATC	5 cut(s)	291, 441, 483, 547, 754
DpnII	GATC	5 cut(s)	289, 439, 481, 545, 752
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	166, 201
EcoT22I	ATGCAT	2 cut(s)	300, 351
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	47, 125, 243
FatI	CATG	3 cut(s)	43, 121, 239
FauI	CCCGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	446
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	571
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	3 cut(s)	253, 325, 550
HhaI	GCGC	1 cut(s)	572
Hin1II	CATG	3 cut(s)	47, 125, 243
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HinfI	GANTC	5 cut(s)	80, 113, 261, 469, 497
HpaII	CCGG	3 cut(s)	253, 325, 550
HphI	GGTGA	3 cut(s)	304, 340, 704
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	79, 502, 735
Hpy188III	TCNNGA	5 cut(s)	302, 473, 485, 718, 756
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	3 cut(s)	380, 396, 559
HpyCH4V	TGCA	9 cut(s)	89, 104, 121, 227, 298, 349, 358, 462, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	282, 709
Hsp92II	CATG	3 cut(s)	47, 125, 243
HspAI	GCGC	1 cut(s)	570
Kzo9I	GATC	5 cut(s)	289, 439, 481, 545, 752
LmnI	GCTCC	2 cut(s)	720, 743
LweI	GCATC	6 cut(s)	39, 287, 307, 424, 493, 646
MaeI	CTAG	1 cut(s)	747
MaeIII	GTNAC	4 cut(s)	39, 114, 157, 592
MalI	GATC	5 cut(s)	291, 441, 483, 547, 754
MboI	GATC	5 cut(s)	289, 439, 481, 545, 752
MboII	GAAGA	2 cut(s)	38, 434
MflI	RGATCY	4 cut(s)	289, 481, 545, 752
MhlI	GDGCHC	1 cut(s)	717
MluCI	AATT	2 cut(s)	68, 140
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	4 cut(s)	28, 145, 529, 604
Mph1103I	ATGCAT	2 cut(s)	300, 351
MseI	TTAA	6 cut(s)	21, 144, 213, 344, 621, 633
MspI	CCGG	3 cut(s)	253, 325, 550
MspR9I	CCNGG	4 cut(s)	168, 203, 326, 550
MvaI	CCWGG	2 cut(s)	168, 203
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	2 cut(s)	326, 550
NdeII	GATC	5 cut(s)	289, 439, 481, 545, 752
NlaIII	CATG	3 cut(s)	47, 125, 243
NlaIV	GGNNCC	3 cut(s)	291, 483, 547
NmuCI	GTSAC	1 cut(s)	114
NsiI	ATGCAT	2 cut(s)	300, 351
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	80, 261, 469, 497
PfoI	TCCNGGA	1 cut(s)	548
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	166, 201
PspGI	CCWGG	2 cut(s)	166, 201
PspN4I	GGNNCC	3 cut(s)	291, 483, 547
PspPI	GGNCC	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	4 cut(s)	289, 481, 545, 752
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SaqAI	TTAA	6 cut(s)	21, 144, 213, 344, 621, 633
Sau3AI	GATC	5 cut(s)	289, 439, 481, 545, 752
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	4 cut(s)	168, 203, 326, 550
SduI	GDGCHC	1 cut(s)	717
SetI	ASST	9 cut(s)	65, 166, 172, 288, 317, 343, 567, 688, 748
SfaNI	GCATC	6 cut(s)	39, 287, 307, 424, 493, 646
SinI	GGWCC	1 cut(s)	164
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	68, 140
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	4 cut(s)	166, 201, 324, 548
TaaI	ACNGT	3 cut(s)	380, 396, 559
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	68, 140
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	80, 261, 469, 497
Tru1I	TTAA	6 cut(s)	21, 144, 213, 344, 621, 633
Tru9I	TTAA	6 cut(s)	21, 144, 213, 344, 621, 633
TscAI	CASTG	3 cut(s)	123, 664, 717
TseFI	GTSAC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	114
TspRI	CASTG	3 cut(s)	123, 664, 717
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	125
XspI	CTAG	1 cut(s)	747
Zsp2I	ATGCAT	2 cut(s)	300, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.