Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003749.1

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Reverse (-)

75994 .. 81192

Gene Structure 5199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003749.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2883 bp

atgtccggcaacagccccgtcggcgattgggtggcgcaccagcgcggcagcgggagcgacaacagcgcgagcgtggcggtggccgcggcggcgcgactgtcgtcgaagcggaaactggacgagtatggcggcctctcgacgttctcggacgacgaggacgacgccgtcgtttctgacctagtccacgtcagaatgaggaaggacgagcccaacgccgtcgattcgtcctccaacaacggcgcagcggcgacgcagcctcagtcttcccacctcaattccaattcgcgagtctccaccgccgcccgatcggcctcctcccgcgccgagtccactcgccacgagttgactcggtcctggccgatgctccaattcttcatcaaaacgatctccggcggcaacactctggtaatccaggcccacgcgcacgactccgtcaagacgctccacgagcgcatagaggcgatcacccgcattccggcgacggagcagaggctcatttaccgaggcaagcagctccagtgggaacagtccctggcccagtgctcaatccaaaacgacgccagcttgcagctcgtcggccgcctccggagcactcaccatcctcaggcctggcaggtcctggaggacttggtctcggtttcttttcggctctgccgcagcgaaaaggtgcacgagccattgaagtacatcaagagccgccttagccagtacttggcaatggctcagaaggagaagacggaggactctggagctagccatatgcaggtgtttataccctcctcggcgccattgtcattgttcatgctctacaattcgcctgttgcaggtaacaaagacattgcagaagagtcgattaagtatttcctgaattcatatgctacattgttgcccaaaaacttgcataatcactgtgcaccgatagtgttagagttctgtaagtttctgagaagggtagggcaggaggaccctctgtacatcttgtgcaggagcgctctaggttcgttttgggagaatgctgggggtttgcaggactcagagtgtgttgatcagttggttaggttgaaggagatttacccgtttctcactgaggtggcaaatagtttgtctaaggatttggagctgagtatggagtcgcctgggagtcttaggccgttgttggatgatgactcagagtgtgttgatcagttggttaggttgaaggagatttacccgtttctcactgaggtggcaaatagtttgtctaaggatttggagctgagtatggagtcgcctgggagtcttaggccgttgttggatgatgtgcgtgattttaaggcattcttgctccccatgcgtactgcaattgccaaagaagtgtattatacgggtcccatttgtgcatcctcgaaaacacaggctgctaagtacccggtgtttggggaagagattgagcttcttcgtagtatacttgctgatttactgaaaagaatggctgagtgccttaccaaagtggtagagtgcttggctgggaaaggaaagggggacagtgatattgttcattctggatggtctcagtatcttgctgttttgaaggaactaaatgggatttgtaaactctatcagggtggggaagaacaattttggatgactctgaggcttagaaagactgcaatatgtgcactagttgtgaaatatgcaaagcgaagtgatgatcatcagtggcttcttgagcacaaagatgtacttgatttcgagtctcgaaggcatttggctatgatgatgttccctgatgttaaagaagactatgaggagttacatgagatgctgattgataggtctcagttattgtcagaatcatttgcatacataggaagtgcagaacctgagtcactgcatgctggattatttatggaatttaaaaatgaggaagctacaggtccaggtgtactgcgggaatggttctttttggtatgccaggacatatttaatccacagaatgcactttttgtggcatgccctaatgaccggagacgattctatcctaatccagcatctaaggtggatcctatgcatctcgattatttcacctttgctggccgggtgattgcgttagctttaatgcataaagtgcaagtgggcatagtctttgaccgtatatttttccaacagttggctggaactttaccatctttggaagacatacgggatgctgatccttacttgtataatagttgcaagcagattctggaaatggatcccgactttattgactcagatgctttaggattgacatttgttagagaagtggaggagttgggatccaggaaaactgttgagcttcgcgctggtgggagaaacattgttgtaaccagcaagaacagggaggaatatgttaaacttcttattaagcatcggtttgtcatatctatcactgaacaagtgaagcattttgcaaaaggttttggtgatattctctccaactcagtgctccagactttctttttccgaagtctagagctagaagatcttgattggatgctgcatggaagtgaaagtgctattagtgttgaagactggaaggcacatactgagtacaatggctacaaagagactgatactcaaatatcttggttctggaagattgttggggaaatgtcggcagagcagagaaaggttcttctcttcttttggacttctgtgaagtaccttccagttgaggggttccgtggcttggcttcgcggctgtacatctacaagtcctcagagcctcctactcgattgccttcatctcatacatgcttttaccggctgtgcttcccaccttatccatccatggctgtcatgagaggtcgcctcaacatcatcacccaagaacatgttggcagcagctttgggacatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

960

Amino Acids

108.68

Weight (kDa)

5.89

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	754
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	3 cut(s)	604, 754, 815
AccB1I	GGYRCC	1 cut(s)	784
AccB7I	CCANNNNNTGG	2 cut(s)	712, 2149
AccI	GTMKAC	1 cut(s)	1444
AccII	CGCG	9 cut(s)	45, 68, 86, 94, 286, 321, 422, 2322, 2719
AccIII	TCCGGA	1 cut(s)	585
AclWI	GGATC	7 cut(s)	2036, 2049, 2186, 2228, 2241, 2292, 2305
AcoI	YGGCCR	4 cut(s)	81, 356, 577, 2074
AcsI	RAATTY	2 cut(s)	868, 1892
AcyI	GRCGYC	3 cut(s)	162, 558, 785
AfeI	AGCGCT	1 cut(s)	991
AfiI	CCNNNNNNNGG	9 cut(s)	475, 604, 712, 763, 824, 1415, 2149, 2696, 2710
AflIII	ACRYGT	1 cut(s)	2854
AgsI	TTSAA	5 cut(s)	682, 1063, 1198, 1570, 2549
AhlI	ACTAGT	1 cut(s)	1660
AjiI	CACGTC	1 cut(s)	187
AleI	CACNNNNGTG	2 cut(s)	1088, 1223
Alw21I	GWGCWC	7 cut(s)	545, 593, 672, 916, 1660, 1713, 2469
Alw26I	GTCTC	7 cut(s)	295, 637, 1554, 1740, 1821, 2002, 2582
Alw44I	GTGCAC	3 cut(s)	668, 912, 1656
AlwI	GGATC	7 cut(s)	2036, 2049, 2186, 2228, 2241, 2292, 2305
AlwNI	CAGNNNCTG	4 cut(s)	532, 619, 1862, 2224
Aor13HI	TCCGGA	1 cut(s)	585
Aor51HI	AGCGCT	1 cut(s)	991
ApaLI	GTGCAC	3 cut(s)	668, 912, 1656
ApoI	RAATTY	2 cut(s)	868, 1892
ArsI	GACNNNNNNTTYG	4 cut(s)	1088, 1120, 1223, 1255
AspS9I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1367, 1916
AsuC2I	CCSGG	2 cut(s)	1409, 2078
AsuHPI	GGTGA	6 cut(s)	457, 587, 2056, 2092, 2456, 2836
AsuNHI	GCTAGC	1 cut(s)	752
AvaII	GGWCC	5 cut(s)	351, 616, 964, 1367, 1916
AxyI	CCTNAGG	1 cut(s)	603
BaeGI	GKGCMC	3 cut(s)	672, 916, 1660
BamHI	GGATCC	3 cut(s)	2041, 2233, 2297
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	4 cut(s)	1055, 1087, 1190, 1222
BauI	CACGAG	3 cut(s)	338, 446, 671
BbsI	GAAGAC	5 cut(s)	255, 740, 1785, 2181, 2556
Bbv12I	GWGCWC	7 cut(s)	545, 593, 672, 916, 1660, 1713, 2469
BccI	CCATC	4 cut(s)	606, 1539, 2173, 2815
BceAI	ACGGC	5 cut(s)	149, 200, 253, 1135, 1270
BcgI	CGANNNNNNTGC	2 cut(s)	831, 865
BclI	TGATCA	3 cut(s)	1045, 1180, 1690
BcnI	CCSGG	2 cut(s)	1409, 2078
BcoDI	GTCTC	7 cut(s)	295, 637, 1554, 1740, 1821, 2002, 2582
BcuI	ACTAGT	1 cut(s)	1660
BfaI	CTAG	6 cut(s)	179, 753, 995, 1661, 2492, 2498
BfmI	CTRYAG	1 cut(s)	1911
BfoI	RGCGCY	2 cut(s)	788, 993
BfuAI	ACCTGC	3 cut(s)	604, 754, 815
BglI	GCCNNNNNGGC	3 cut(s)	21, 89, 308
BglII	AGATCT	1 cut(s)	2503
BmcAI	AGTACT	1 cut(s)	710
Bme18I	GGWCC	5 cut(s)	351, 616, 964, 1367, 1916
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1367, 1916
BmiI	GGNNCC	8 cut(s)	786, 966, 1368, 1369, 2043, 2235, 2299, 2702
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	9 cut(s)	351, 1388, 1791, 2039, 2059, 2176, 2245, 2398, 2505
BmtI	GCTAGC	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	100
BpiI	GAAGAC	5 cut(s)	255, 740, 1785, 2181, 2556
BplI	GAGNNNNNCTC	2 cut(s)	2817, 2849
BpmI	CTGGAG	4 cut(s)	500, 641, 768, 2453
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	1727
BpuMI	CCSGG	2 cut(s)	1409, 2078
BsaBI	GATNNNNATC	2 cut(s)	1692, 2190
BsaHI	GRCGYC	3 cut(s)	162, 558, 785
BsaI	GGTCTC	3 cut(s)	637, 1554, 1821
BsaJI	CCNNGG	8 cut(s)	84, 502, 531, 780, 1136, 1271, 2704, 2811
BsaWI	WCCGGW	2 cut(s)	585, 2004
Bsc4I	CCNNNNNNNGG	9 cut(s)	475, 604, 712, 763, 824, 1415, 2149, 2696, 2710
Bse118I	RCCGGY	1 cut(s)	2784
Bse1I	ACTGG	6 cut(s)	120, 517, 538, 706, 2558, 2690
Bse21I	CCTNAGG	1 cut(s)	603
Bse3DI	GCAATG	2 cut(s)	723, 837
Bse8I	GATNNNNATC	2 cut(s)	1692, 2190
BseAI	TCCGGA	1 cut(s)	585
BseDI	CCNNGG	8 cut(s)	84, 502, 531, 780, 1136, 1271, 2704, 2811
BseGI	GGATG	9 cut(s)	598, 1165, 1300, 1379, 1550, 1629, 2191, 2520, 2807
BseJI	GATNNNNATC	2 cut(s)	1692, 2190
BseLI	CCNNNNNNNGG	9 cut(s)	475, 604, 712, 763, 824, 1415, 2149, 2696, 2710
BseMI	GCAATG	2 cut(s)	723, 837
BseNI	ACTGG	6 cut(s)	120, 517, 538, 706, 2558, 2690
BseRI	GAGGAG	4 cut(s)	304, 769, 1802, 2303
BseSI	GKGCMC	3 cut(s)	672, 916, 1660
BseX3I	CGGCCG	1 cut(s)	577
BseYI	CCCAGC	2 cut(s)	1016, 1505
BsgI	GTGCAG	2 cut(s)	1003, 1875
Bsh1236I	CGCG	9 cut(s)	45, 68, 86, 94, 286, 321, 422, 2322, 2719
Bsh1285I	CGRYCG	2 cut(s)	308, 580
BshNI	GGYRCC	1 cut(s)	784
BsiEI	CGRYCG	2 cut(s)	308, 580
BsiHKAI	GWGCWC	7 cut(s)	545, 593, 672, 916, 1660, 1713, 2469
BsiSI	CCGG	8 cut(s)	6, 390, 476, 586, 1409, 2005, 2077, 2785
BslFI	GGGAC	3 cut(s)	514, 1353, 1535
BslI	CCNNNNNNNGG	9 cut(s)	475, 604, 712, 763, 824, 1415, 2149, 2696, 2710
BsmAI	GTCTC	7 cut(s)	295, 637, 1554, 1740, 1821, 2002, 2582
BsmBI	CGTCTC	1 cut(s)	2002
BsmFI	GGGAC	3 cut(s)	514, 1353, 1535
BsmI	GAATGC	4 cut(s)	471, 1018, 1316, 1981
Bso31I	GGTCTC	3 cut(s)	637, 1554, 1821
Bsp1286I	GDGCHC	8 cut(s)	210, 545, 593, 672, 916, 1660, 1713, 2469
Bsp13I	TCCGGA	1 cut(s)	585
Bsp1407I	TGTACA	2 cut(s)	972, 2724
Bsp19I	CCATGG	1 cut(s)	2811
Bsp68I	TCGCGA	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	585
BspFNI	CGCG	9 cut(s)	45, 68, 86, 94, 286, 321, 422, 2322, 2719
BspHI	TCATGA	1 cut(s)	2820
BspLI	GGNNCC	8 cut(s)	786, 966, 1368, 1369, 2043, 2235, 2299, 2702
BspMI	ACCTGC	3 cut(s)	604, 754, 815
BspOI	GCTAGC	1 cut(s)	756
BspPI	GGATC	7 cut(s)	2036, 2049, 2186, 2228, 2241, 2292, 2305
BspT107I	GGYRCC	1 cut(s)	784
BspTNI	GGTCTC	3 cut(s)	637, 1554, 1821
BsrDI	GCAATG	2 cut(s)	723, 837
BsrFI	RCCGGY	1 cut(s)	2784
BsrGI	TGTACA	2 cut(s)	972, 2724
BsrI	ACTGG	6 cut(s)	120, 517, 538, 706, 2558, 2690
BssAI	RCCGGY	1 cut(s)	2784
BssECI	CCNNGG	8 cut(s)	84, 502, 531, 780, 1136, 1271, 2704, 2811
BssNAI	GTATAC	1 cut(s)	1445
BssNI	GRCGYC	3 cut(s)	162, 558, 785
BssSI	CACGAG	3 cut(s)	338, 446, 671
BssT1I	CCWWGG	1 cut(s)	2811
Bst1107I	GTATAC	1 cut(s)	1445
Bst2BI	CACGAG	3 cut(s)	338, 446, 671
Bst4CI	ACNGT	7 cut(s)	99, 528, 911, 1526, 2132, 2148, 2311
Bst6I	CTCTTC	3 cut(s)	840, 1416, 2666
BstACI	GRCGYC	3 cut(s)	162, 558, 785
BstAPI	GCANNNNNTGC	2 cut(s)	1655, 2107
BstAUI	TGTACA	2 cut(s)	972, 2724
BstC8I	GCNNGC	9 cut(s)	70, 509, 562, 566, 754, 1875, 1993, 2074, 2216
BstDSI	CCRYGG	3 cut(s)	84, 2704, 2811
BstENI	CCTNNNNNAGG	1 cut(s)	822
BstF5I	GGATG	9 cut(s)	598, 1165, 1300, 1379, 1550, 1629, 2191, 2520, 2807
BstFNI	CGCG	9 cut(s)	45, 68, 86, 94, 286, 321, 422, 2322, 2719
BstH2I	RGCGCY	2 cut(s)	788, 993
BstMAI	GTCTC	7 cut(s)	295, 637, 1554, 1740, 1821, 2002, 2582
BstMCI	CGRYCG	2 cut(s)	308, 580
BstNSI	RCATGY	4 cut(s)	1877, 1995, 2778, 2858
BstPAI	GACNNNNGTC	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	1911
BstSLI	GKGCMC	3 cut(s)	672, 916, 1660
BstUI	CGCG	9 cut(s)	45, 68, 86, 94, 286, 321, 422, 2322, 2719
BstV2I	GAAGAC	5 cut(s)	255, 740, 1785, 2181, 2556
BstX2I	RGATCY	4 cut(s)	2041, 2233, 2297, 2503
BstYI	RGATCY	4 cut(s)	2041, 2233, 2297, 2503
BstZ17I	GTATAC	1 cut(s)	1445
BstZI	CGGCCG	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	603
BtgI	CCRYGG	3 cut(s)	84, 2704, 2811
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	9 cut(s)	598, 1165, 1300, 1379, 1550, 1629, 2191, 2520, 2807
BtsI	GCAGTG	1 cut(s)	1868
BtuMI	TCGCGA	1 cut(s)	286
BveI	ACCTGC	3 cut(s)	604, 754, 815
Cac8I	GCNNGC	9 cut(s)	70, 509, 562, 566, 754, 1875, 1993, 2074, 2216
CaiI	CAGNNNCTG	4 cut(s)	532, 619, 1862, 2224
CciI	TCATGA	1 cut(s)	2820
Cfr10I	RCCGGY	1 cut(s)	2784
Cfr13I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1367, 1916
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	4 cut(s)	170, 259, 448, 566
DinI	GGCGCC	1 cut(s)	786
DraI	TTTAAA	1 cut(s)	1897
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	4 cut(s)	81, 356, 577, 2074
EagI	CGGCCG	1 cut(s)	577
Eam1104I	CTCTTC	3 cut(s)	840, 1416, 2666
EarI	CTCTTC	3 cut(s)	840, 1416, 2666
EclXI	CGGCCG	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	2811
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	3 cut(s)	637, 1554, 1821
Eco47I	GGWCC	5 cut(s)	351, 616, 964, 1367, 1916
Eco47III	AGCGCT	1 cut(s)	991
Eco52I	CGGCCG	1 cut(s)	577
Eco81I	CCTNAGG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	822
EcoO109I	RGGNCCY	3 cut(s)	616, 964, 1367
EcoRI	GAATTC	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	2811
EcoT22I	ATGCAT	2 cut(s)	2052, 2103
EcoT38I	GRGCYC	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	786
EheI	GGCGCC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	2811
Esp3I	CGTCTC	1 cut(s)	2002
FalI	AAGNNNNNCTT	4 cut(s)	1304, 1336, 1707, 1739
FaqI	GGGAC	3 cut(s)	514, 1353, 1535
FauI	CCCGC	4 cut(s)	44, 326, 476, 1923
FauNDI	CATATG	2 cut(s)	759, 874
FbaI	TGATCA	3 cut(s)	1045, 1180, 1690
FblI	GTMKAC	1 cut(s)	1444
FokI	GGATG	9 cut(s)	585, 1172, 1307, 1366, 1557, 1636, 2198, 2527, 2794
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	6 cut(s)	179, 753, 995, 1661, 2492, 2498
GsaI	CCCAGC	2 cut(s)	1020, 1509
GsuI	CTGGAG	4 cut(s)	500, 641, 768, 2453
HaeII	RGCGCY	2 cut(s)	788, 993
HapII	CCGG	8 cut(s)	6, 390, 476, 586, 1409, 2005, 2077, 2785
HgaI	GACGC	4 cut(s)	170, 259, 448, 566
Hin1I	GRCGYC	3 cut(s)	162, 558, 785
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HpaII	CCGG	8 cut(s)	6, 390, 476, 586, 1409, 2005, 2077, 2785
HphI	GGTGA	6 cut(s)	457, 587, 2056, 2092, 2456, 2836
Hpy166II	GTNNAC	9 cut(s)	184, 330, 345, 670, 914, 1445, 1592, 1658, 1925
Hpy8I	GTNNAC	9 cut(s)	184, 330, 345, 670, 914, 1445, 1592, 1658, 1925
HpyCH4III	ACNGT	7 cut(s)	99, 528, 911, 1526, 2132, 2148, 2311
HpyCH4IV	ACGT	2 cut(s)	140, 186
HpySE526I	ACGT	2 cut(s)	140, 186
Hsp92I	GRCGYC	3 cut(s)	162, 558, 785
KasI	GGCGCC	1 cut(s)	784
KflI	GGGWCCC	1 cut(s)	1367
Kpn2I	TCCGGA	1 cut(s)	585
Ksp22I	TGATCA	3 cut(s)	1045, 1180, 1690
KspI	CCGCGG	1 cut(s)	87
LweI	GCATC	9 cut(s)	351, 1388, 1791, 2039, 2059, 2176, 2245, 2398, 2505
MaeI	CTAG	6 cut(s)	179, 753, 995, 1661, 2492, 2498
MaeII	ACGT	2 cut(s)	140, 186
MaeIII	GTNAC	4 cut(s)	827, 1791, 1866, 2344
MfeI	CAATTG	1 cut(s)	1341
MflI	RGATCY	4 cut(s)	2041, 2233, 2297, 2503
MhlI	GDGCHC	8 cut(s)	210, 545, 593, 672, 916, 1660, 1713, 2469
MluCI	AATT	8 cut(s)	274, 280, 368, 811, 868, 1341, 1616, 1892
Mly113I	GGCGCC	1 cut(s)	785
MmeI	TCCRAC	5 cut(s)	255, 1137, 1272, 2167, 2481
Mph1103I	ATGCAT	2 cut(s)	2052, 2103
MroI	TCCGGA	1 cut(s)	585
MseI	TTAA	8 cut(s)	855, 1311, 1773, 1896, 1965, 2096, 2373, 2385
MslI	CAYNNNNRTG	4 cut(s)	1088, 1223, 1716, 2526
MspA1I	CMGCKG	3 cut(s)	51, 86, 245
MspI	CCGG	8 cut(s)	6, 390, 476, 586, 1409, 2005, 2077, 2785
MunI	CAATTG	1 cut(s)	1341
Mva1269I	GAATGC	4 cut(s)	471, 1018, 1316, 1981
MvnI	CGCG	9 cut(s)	45, 68, 86, 94, 286, 321, 422, 2322, 2719
NarI	GGCGCC	1 cut(s)	785
NciI	CCSGG	2 cut(s)	1409, 2078
NcoI	CCATGG	1 cut(s)	2811
NdeI	CATATG	2 cut(s)	759, 874
NheI	GCTAGC	1 cut(s)	752
NlaIV	GGNNCC	8 cut(s)	786, 966, 1368, 1369, 2043, 2235, 2299, 2702
NmeAIII	GCCGAG	2 cut(s)	349, 761
NmuCI	GTSAC	1 cut(s)	1866
NruI	TCGCGA	1 cut(s)	286
NsiI	ATGCAT	2 cut(s)	2052, 2103
NspI	RCATGY	4 cut(s)	1877, 1995, 2778, 2858
OliI	CACNNNNGTG	2 cut(s)	1088, 1223
PaeI	GCATGC	2 cut(s)	1877, 1995
PagI	TCATGA	1 cut(s)	2820
PaqCI	CACCTGC	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	608
PciI	ACATGT	1 cut(s)	2854
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PctI	GAATGC	4 cut(s)	471, 1018, 1316, 1981
PfeI	GAWTC	4 cut(s)	221, 1832, 2013, 2221
PflFI	GACNNNGTC	5 cut(s)	164, 179, 349, 431, 629
PflMI	CCANNNNNTGG	2 cut(s)	712, 2149
PfoI	TCCNGGA	2 cut(s)	618, 2300
Ple19I	CGATCG	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	788
PpuMI	RGGWCCY	3 cut(s)	616, 964, 1367
PscI	ACATGT	1 cut(s)	2854
PshAI	GACNNNNGTC	1 cut(s)	100
Psp5II	RGGWCCY	3 cut(s)	616, 964, 1367
PspFI	CCCAGC	2 cut(s)	1016, 1505
PspN4I	GGNNCC	8 cut(s)	786, 966, 1368, 1369, 2043, 2235, 2299, 2702
PspPI	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1367, 1916
PspPPI	RGGWCCY	3 cut(s)	616, 964, 1367
PstNI	CAGNNNCTG	4 cut(s)	532, 619, 1862, 2224
PsuI	RGATCY	4 cut(s)	2041, 2233, 2297, 2503
PsyI	GACNNNGTC	5 cut(s)	164, 179, 349, 431, 629
PvuI	CGATCG	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	286
RseI	CAYNNNNRTG	4 cut(s)	1088, 1223, 1716, 2526
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	8 cut(s)	855, 1311, 1773, 1896, 1965, 2096, 2373, 2385
Sau96I	GGNCC	7 cut(s)	351, 415, 535, 616, 964, 1367, 1916
ScaI	AGTACT	1 cut(s)	710
SduI	GDGCHC	8 cut(s)	210, 545, 593, 672, 916, 1660, 1713, 2469
SfaNI	GCATC	9 cut(s)	351, 1388, 1791, 2039, 2059, 2176, 2245, 2398, 2505
SfcI	CTRYAG	1 cut(s)	1911
SfoI	GGCGCC	1 cut(s)	786
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	5 cut(s)	351, 616, 964, 1367, 1916
SmiMI	CAYNNNNRTG	4 cut(s)	1088, 1223, 1716, 2526
SmlI	CTYRAG	1 cut(s)	1706
SmoI	CTYRAG	1 cut(s)	1706
SpeI	ACTAGT	1 cut(s)	1660
SphI	GCATGC	2 cut(s)	1877, 1995
Sse9I	AATT	8 cut(s)	274, 280, 368, 811, 868, 1341, 1616, 1892
SseBI	AGGCCT	1 cut(s)	608
SspDI	GGCGCC	1 cut(s)	784
SspMI	CTAG	6 cut(s)	179, 753, 995, 1661, 2492, 2498
StuI	AGGCCT	1 cut(s)	608
StyI	CCWWGG	1 cut(s)	2811
TaaI	ACNGT	7 cut(s)	99, 528, 911, 1526, 2132, 2148, 2311
TaiI	ACGT	2 cut(s)	143, 189
TaqI	TCGA	9 cut(s)	104, 137, 219, 851, 1385, 1731, 1738, 2055, 2755
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	8 cut(s)	274, 280, 368, 811, 868, 1341, 1616, 1892
TatI	WGTACW	7 cut(s)	684, 708, 972, 1720, 1924, 2571, 2724
TfiI	GAWTC	4 cut(s)	221, 1832, 2013, 2221
Tru1I	TTAA	8 cut(s)	855, 1311, 1773, 1896, 1965, 2096, 2373, 2385
Tru9I	TTAA	8 cut(s)	855, 1311, 1773, 1896, 1965, 2096, 2373, 2385
TseFI	GTSAC	1 cut(s)	1866
Tsp45I	GTSAC	1 cut(s)	1866
TspDTI	ATGAA	5 cut(s)	364, 790, 861, 1526, 2754
TspGWI	ACGGA	4 cut(s)	421, 497, 752, 2693
Tth111I	GACNNNGTC	5 cut(s)	164, 179, 349, 431, 629
Van91I	CCANNNNNTGG	2 cut(s)	712, 2149
VneI	GTGCAC	3 cut(s)	668, 912, 1656
VpaK11BI	GGWCC	5 cut(s)	351, 616, 964, 1367, 1916
XagI	CCTNNNNNAGG	1 cut(s)	822
XapI	RAATTY	2 cut(s)	868, 1892
XbaI	TCTAGA	1 cut(s)	2491
XceI	RCATGY	4 cut(s)	1877, 1995, 2778, 2858
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2150, 2855
XmiI	GTMKAC	1 cut(s)	1444
XspI	CTAG	6 cut(s)	179, 753, 995, 1661, 2492, 2498
ZrmI	AGTACT	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	2052, 2103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.