Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

17200745 .. 17201924

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG192400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGAGACGACCACCACCGCCTCCGCCTTCCTCAAATTCAACCTCAGCTTCTTGGTTTTGTGATCGATTCTCAAAGGTGGAATGGGGGCTTTGATTTCAAACACATAGAGAGAGAGGGAGAGAGAGAAATTGAGAGAGGAGAAACCAACGTCGTCAGAATGAGGAAGGACGAGCCCAACGTCGTCGATTCGTCTTCCAACTGCGCAGTGGCGATGCAGCCTCAGTCGTTCCACCTCAATTCCAATTCGCGAGTCTCCACCGCCGCCCGATCGGTCTCCTCGGTGGTCGCCGATATATATATATATATAGAGAGAGAGAGAGAGAGAGATTATATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

113

Amino Acids

13.25

Weight (kDa)

6.07

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	205
AccII	CGCG	1 cut(s)	250
AciI	CCGC	4 cut(s)	19, 25, 261, 264
AcsI	RAATTY	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	41, 100
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	259, 280
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	259, 280
BisI	GCNGC	2 cut(s)	218, 264
BlsI	GCNGC	2 cut(s)	219, 265
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	59, 236
BseRI	GAGGAG	2 cut(s)	153, 268
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	259, 280
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	63, 269
Bsp68I	TCGCGA	1 cut(s)	250
BspACI	CCGC	4 cut(s)	19, 25, 261, 264
BspCNI	CTCAG	2 cut(s)	58, 235
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	63, 269
BstDEI	CTNAG	2 cut(s)	45, 222
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	66, 272
BstMAI	GTCTC	2 cut(s)	259, 280
BstMBI	GATC	2 cut(s)	63, 269
BstMCI	CGRYCG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
BtuMI	TCGCGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	66
CviJI	RGCY	4 cut(s)	49, 90, 175, 220
CviKI_1	RGCY	4 cut(s)	49, 90, 175, 220
DdeI	CTNAG	2 cut(s)	45, 222
DpnI	GATC	2 cut(s)	65, 271
DpnII	GATC	2 cut(s)	63, 269
EciI	GGCGGA	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	218, 264
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	218, 264
FspI	TGCGCA	1 cut(s)	205
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	2 cut(s)	218, 264
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	68, 188, 252
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	155, 185, 188
HpyAV	CCTTC	2 cut(s)	38, 160
HpyCH4IV	ACGT	2 cut(s)	150, 180
HpyCH4V	TGCA	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	45, 222
HpySE526I	ACGT	2 cut(s)	150, 180
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	63, 269
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	2 cut(s)	150, 180
MalI	GATC	2 cut(s)	65, 271
MboI	GATC	2 cut(s)	63, 269
MboII	GAAGA	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	4 cut(s)	36, 129, 238, 244
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	32, 42, 54, 109, 131, 156, 231, 245, 289
MseI	TTAA	1 cut(s)	340
MvnI	CGCG	1 cut(s)	250
NdeII	GATC	2 cut(s)	63, 269
NruI	TCGCGA	1 cut(s)	250
NsbI	TGCGCA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	68, 188
PkrI	GCNGC	2 cut(s)	219, 265
Ple19I	CGATCG	1 cut(s)	272
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PvuI	CGATCG	1 cut(s)	272
RruI	TCGCGA	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	2 cut(s)	218, 264
Sau3AI	GATC	2 cut(s)	63, 269
SchI	GAGTC	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	46, 51, 80, 153, 183, 237
SfaNI	GCATC	1 cut(s)	204
SgeI	CNNG	6 cut(s)	65, 184, 261, 263, 279, 292
Sse9I	AATT	4 cut(s)	36, 129, 238, 244
SsiI	CCGC	4 cut(s)	19, 25, 261, 264
TaiI	ACGT	2 cut(s)	153, 183
TaqI	TCGA	2 cut(s)	66, 186
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	4 cut(s)	36, 129, 238, 244
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	68, 188
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	1 cut(s)	217
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.