Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Forward (+)

905305 .. 910969

Gene Structure 5665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2556 bp

ATGAGGAAGGACGAGCCCAACGCCGTCGATTCGTCCTCCAACAACGGCGCAGCGGCGACGCAGCCTCAGTCTTCCCACCTCAATTCCAATTCGCGAGTCTCCACCGCCGCCCGATCGGCCTCCTCCCGCGCCGAGTCCACTCGCCACGAGTTGACTCGGTCCTGGCCGATGCTCCAATTCTTCATCAAAACGATCTCCGGCGGCAACACTCTGGTAATCCAGGCCCACGCGCACGACTCCGTCAAGACGCTCCACGAGCGCATAGAGGCGATCACCCGCATTCCGGCGACGGAGCAGAGGCTCATTTACCGAGGCAAGCAGCTCCAGTGGGAACAGTCCCTGGCCCAGTGCTCAATCCAAAACGACGCCAGCTTGCAGCTCGTCGGCCGTCTCCGGAGCACTCACCATCCTCAGGCCTGGCAGGTCCTGGAGGACTTGGTCTCTGTTTCTTTTCGGCTCTGCCGCAGCGAAAAGGTGCACGAGCCATTGAAGTACATCAAGAGCCGCCTTAGCCAGTACTTGGGAATGGCTCAGAAGGAGAAGACGGAGGACTCTGGAGCTAGCCATATGCAGGTGTTTATACCCTCCTCGGCGCCATTGTCATTGTTCATGCTCTACAATTCGCCTGTTGCAGGTAACAAAGACATTGCAGAAGAGTCGATTAAGTATTTCCTGAATTCATATGCTACATTGTTGCCCAAAAACTTGCATAATCACTGCGCACCGATAGTGTTAGAGTTCTGTAAGTTTCTGAGAAGGGTAGGGCAGGAGGACCCTCTGTACATCTTGTGCAGGAGCGCTCTAGGTTCGTTTTGGGAGAATGCTGGGGGTTTGCAGGACTCAGAGTGTGTTGATCAGTTTGTTAGGTTGAAGGAGATTTACCCGTTTCTCACTGAGGTGGCAAATAGTTTGTCTAAGGATTTGGAGCTGAGTATGGAGTCGCCTGGGAGTCTTAGGCCGTTGTTGGATGATGTGCGTGATTTTAAGGCATTCTTGCTCCCCATGCGTACTGCAATTGCCAAAGAAGTGTATTATACGGGTCCCATTTGTGCATCCTCGAAAACACAGGCTGCTAAGTACCCGGTGTTTGGGGAAGAGATTGAGCTTCTTCGTAGTATACTTGCTGATTTGCTGAAAAGAATGGCTGAGTGCCTTACCAAAGTGGTAGAGTGCTTGGCTGGGAAAGGAAAGGTGGACAGTGATATTGTTCATTCTGGATGGTCTCAGTATCTTGCTGTTTTGAAGGAACTACATGGGATTTGTAAACTCTATCAGGGTGGGGAAGAACAATTTTGGACGACTCTGAGGATTAGAAAGACTGCAATATGTGCACTAGTTGTGAAATATGCAAAGCGAAGTGATGATCATCAGTGGCTTCTTGAGCACAAAGATGTACTTGATTTCGAGTCTCGAAGGCATTTGGCTATGATGATGTTCCCTGATGTTAAAGAAGACTATGAGGAGTTACATGAGATGCTGATTGATAGGTCTCAGTTATTGTCAGAATCATTTGCATACATAGGAAGTGCAGAACCTGAGTCACTGCATGCTGGATTATTTATGGAATTTAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGGGAATGGTTCTTTTTGGTATGCCAGGACATATTTAATCCACAGAATGCACTTTTTGTGGCATGCCCTAATGACCGGAGACGATTCTATCCTAATCCAGCATCTAAGGTGGATCCTATGCATCTCGATTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTAATGCATAAAGTGCAAGTGGGCATAGTCTTTGACCGTATATTTTTCCAACAGTTGGCTGGAACTTTACCATCTTTGGAAGACATACGGGATGCTGATCCTTACTTGTATAATAGTTGCAAGCAGATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTAGGATTGACATTTGTTAGAGAAGTAGAGGAGTTGGGATCCAGGAAAACTGTTGAGCTTCGCGCTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAAACTTCTTATTAAGCATCGGTTTGTCATATCTATCACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTCTCCAACTCAGTGCTCCAGACTTTCTTTTTCCGAAGTTTAGAGCTAGAAGATCTTGATTGGATGCTACATGGAAGTGAAAGTGCTATTAGTGTTGAAGACTGGAAGGCACATACTGAGTACAATGGCTACAAAGAGACTGATACTCAAATATCTTGGTTCTGGAAGATTGTTGGGGAAATGTCAGCAGAGCAGAGAAAGGTTCTTCTCTTCTTTTGGACTTCTGTGAAGTACCTTCCAGTTGAGGGGTTCCGTGGCTTGGCTTCGCGGCTGTACATCTACAAGTCCTCAGAGCCTCCTACTCGATTGCCTTCATCTCATACATGCTTTTACCGGCTGTGCTTCCCACCTTATCCATCCATGGCTGTCATGAGAGGTCGCCTCAACATCATCACCCAAGAACATGTTGGCAGCAGCTTTGGGACATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

851

Amino Acids

97.05

Weight (kDa)

6.39

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	61 - 132	5.4e-16	Ubiquitin family
HECT	PF00632	540 - 843	8.4e-79	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc16I	TGCGCA	1 cut(s)	721
Acc36I	ACCTGC	3 cut(s)	412, 562, 623
AccB1I	GGYRCC	1 cut(s)	592
AccB7I	CCANNNNNTGG	2 cut(s)	520, 1822
AccI	GTMKAC	1 cut(s)	1117
AccII	CGCG	5 cut(s)	94, 129, 230, 1995, 2392
AccIII	TCCGGA	1 cut(s)	393
AclWI	GGATC	7 cut(s)	1709, 1722, 1859, 1901, 1914, 1965, 1978
AcoI	YGGCCR	3 cut(s)	164, 385, 1747
AcsI	RAATTY	2 cut(s)	676, 1565
AcyI	GRCGYC	2 cut(s)	366, 593
AfeI	AGCGCT	1 cut(s)	799
AfiI	CCNNNNNNNGG	9 cut(s)	283, 412, 520, 571, 632, 1088, 1822, 2369, 2383
AflIII	ACRYGT	1 cut(s)	2527
AgsI	TTSAA	4 cut(s)	490, 871, 1243, 2222
AhlI	ACTAGT	1 cut(s)	1333
AjnI	CCWGG	9 cut(s)	161, 219, 339, 416, 426, 943, 1591, 1626, 1973
AleI	CACNNNNGTG	1 cut(s)	896
Alw21I	GWGCWC	6 cut(s)	353, 401, 480, 1333, 1386, 2142
Alw26I	GTCTC	8 cut(s)	103, 395, 445, 1227, 1413, 1494, 1675, 2255
Alw44I	GTGCAC	2 cut(s)	476, 1329
AlwI	GGATC	7 cut(s)	1709, 1722, 1859, 1901, 1914, 1965, 1978
AlwNI	CAGNNNCTG	4 cut(s)	340, 427, 1535, 1897
Aor13HI	TCCGGA	1 cut(s)	393
Aor51HI	AGCGCT	1 cut(s)	799
AoxI	GGCC	8 cut(s)	117, 164, 222, 342, 385, 414, 956, 1747
ApaLI	GTGCAC	2 cut(s)	476, 1329
ApeKI	GCWGC	8 cut(s)	50, 61, 319, 376, 465, 1070, 2535, 2538
ApoI	RAATTY	2 cut(s)	676, 1565
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspLEI	GCGC	8 cut(s)	50, 131, 232, 261, 595, 722, 800, 1997
AspS9I	GGNCC	7 cut(s)	159, 223, 343, 424, 772, 1040, 1589
AsuC2I	CCSGG	2 cut(s)	1082, 1751
AsuHPI	GGTGA	6 cut(s)	265, 395, 1729, 1765, 2129, 2509
AsuNHI	GCTAGC	1 cut(s)	560
AvaII	GGWCC	5 cut(s)	159, 424, 772, 1040, 1589
AxyI	CCTNAGG	1 cut(s)	411
BaeGI	GKGCMC	2 cut(s)	480, 1333
BamHI	GGATCC	3 cut(s)	1714, 1906, 1970
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	18
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
BauI	CACGAG	3 cut(s)	146, 254, 479
BbsI	GAAGAC	5 cut(s)	63, 548, 1458, 1854, 2229
Bbv12I	GWGCWC	6 cut(s)	353, 401, 480, 1333, 1386, 2142
BbvI	GCAGC	8 cut(s)	62, 73, 331, 388, 477, 1057, 2547, 2550
BccI	CCATC	4 cut(s)	414, 1212, 1846, 2488
BceAI	ACGGC	4 cut(s)	8, 61, 372, 943
BcgI	CGANNNNNNTGC	2 cut(s)	639, 673
BciT130I	CCWGG	9 cut(s)	163, 221, 341, 418, 428, 945, 1593, 1628, 1975
BclI	TGATCA	2 cut(s)	853, 1363
BcnI	CCSGG	2 cut(s)	1082, 1751
BcoDI	GTCTC	8 cut(s)	103, 395, 445, 1227, 1413, 1494, 1675, 2255
BcuI	ACTAGT	1 cut(s)	1333
BfaI	CTAG	4 cut(s)	561, 803, 1334, 2171
BfmI	CTRYAG	1 cut(s)	1584
BfoI	RGCGCY	2 cut(s)	596, 801
BfuAI	ACCTGC	3 cut(s)	412, 562, 623
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	2176
BmcAI	AGTACT	1 cut(s)	518
Bme18I	GGWCC	5 cut(s)	159, 424, 772, 1040, 1589
BmgT120I	GGNCC	7 cut(s)	159, 223, 343, 424, 772, 1040, 1589
BmiI	GGNNCC	8 cut(s)	594, 774, 1041, 1042, 1716, 1908, 1972, 2375
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	9 cut(s)	159, 1061, 1464, 1712, 1732, 1849, 1918, 2071, 2178
BmtI	GCTAGC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	340
BpiI	GAAGAC	5 cut(s)	63, 548, 1458, 1854, 2229
BplI	GAGNNNNNCTC	2 cut(s)	2490, 2522
BpmI	CTGGAG	4 cut(s)	308, 449, 576, 2126
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	1400
BpuMI	CCSGG	2 cut(s)	1082, 1751
BsaBI	GATNNNNATC	2 cut(s)	1365, 1863
BsaHI	GRCGYC	2 cut(s)	366, 593
BsaI	GGTCTC	3 cut(s)	445, 1227, 1494
BsaJI	CCNNGG	6 cut(s)	310, 339, 588, 944, 2377, 2484
BsaWI	WCCGGW	2 cut(s)	393, 1677
Bsc4I	CCNNNNNNNGG	9 cut(s)	283, 412, 520, 571, 632, 1088, 1822, 2369, 2383
Bse118I	RCCGGY	1 cut(s)	2457
Bse1I	ACTGG	5 cut(s)	325, 346, 514, 2231, 2363
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	2 cut(s)	1365, 1863
BseAI	TCCGGA	1 cut(s)	393
BseBI	CCWGG	9 cut(s)	163, 221, 341, 418, 428, 945, 1593, 1628, 1975
BseDI	CCNNGG	6 cut(s)	310, 339, 588, 944, 2377, 2484
BseGI	GGATG	7 cut(s)	406, 973, 1052, 1223, 1864, 2193, 2480
BseJI	GATNNNNATC	2 cut(s)	1365, 1863
BseLI	CCNNNNNNNGG	9 cut(s)	283, 412, 520, 571, 632, 1088, 1822, 2369, 2383
BseMI	GCAATG	1 cut(s)	645
BseNI	ACTGG	5 cut(s)	325, 346, 514, 2231, 2363
BseRI	GAGGAG	4 cut(s)	112, 577, 1475, 1976
BseSI	GKGCMC	2 cut(s)	480, 1333
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	8 cut(s)	62, 73, 331, 388, 477, 1057, 2547, 2550
BseYI	CCCAGC	2 cut(s)	824, 1178
BsgI	GTGCAG	2 cut(s)	811, 1548
Bsh1236I	CGCG	5 cut(s)	94, 129, 230, 1995, 2392
Bsh1285I	CGRYCG	2 cut(s)	116, 388
BshFI	GGCC	8 cut(s)	119, 166, 224, 344, 387, 416, 958, 1749
BshNI	GGYRCC	1 cut(s)	592
BsiEI	CGRYCG	2 cut(s)	116, 388
BsiHKAI	GWGCWC	6 cut(s)	353, 401, 480, 1333, 1386, 2142
BsiSI	CCGG	7 cut(s)	198, 284, 394, 1082, 1678, 1750, 2458
BslFI	GGGAC	2 cut(s)	322, 1026
BslI	CCNNNNNNNGG	9 cut(s)	283, 412, 520, 571, 632, 1088, 1822, 2369, 2383
BsmAI	GTCTC	8 cut(s)	103, 395, 445, 1227, 1413, 1494, 1675, 2255
BsmBI	CGTCTC	2 cut(s)	395, 1675
BsmFI	GGGAC	2 cut(s)	322, 1026
BsmI	GAATGC	4 cut(s)	279, 826, 989, 1654
BsnI	GGCC	8 cut(s)	119, 166, 224, 344, 387, 416, 958, 1749
Bso31I	GGTCTC	3 cut(s)	445, 1227, 1494
Bsp1286I	GDGCHC	7 cut(s)	18, 353, 401, 480, 1333, 1386, 2142
Bsp13I	TCCGGA	1 cut(s)	393
Bsp1407I	TGTACA	2 cut(s)	780, 2397
Bsp19I	CCATGG	1 cut(s)	2484
Bsp68I	TCGCGA	1 cut(s)	94
BspANI	GGCC	8 cut(s)	119, 166, 224, 344, 387, 416, 958, 1749
BspEI	TCCGGA	1 cut(s)	393
BspFNI	CGCG	5 cut(s)	94, 129, 230, 1995, 2392
BspHI	TCATGA	1 cut(s)	2493
BspLI	GGNNCC	8 cut(s)	594, 774, 1041, 1042, 1716, 1908, 1972, 2375
BspMI	ACCTGC	3 cut(s)	412, 562, 623
BspOI	GCTAGC	1 cut(s)	564
BspPI	GGATC	7 cut(s)	1709, 1722, 1859, 1901, 1914, 1965, 1978
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	3 cut(s)	445, 1227, 1494
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	2457
BsrGI	TGTACA	2 cut(s)	780, 2397
BsrI	ACTGG	5 cut(s)	325, 346, 514, 2231, 2363
BssAI	RCCGGY	1 cut(s)	2457
BssECI	CCNNGG	6 cut(s)	310, 339, 588, 944, 2377, 2484
BssNAI	GTATAC	1 cut(s)	1118
BssNI	GRCGYC	2 cut(s)	366, 593
BssSI	CACGAG	3 cut(s)	146, 254, 479
BssT1I	CCWWGG	1 cut(s)	2484
Bst1107I	GTATAC	1 cut(s)	1118
Bst2BI	CACGAG	3 cut(s)	146, 254, 479
Bst2UI	CCWGG	9 cut(s)	163, 221, 341, 418, 428, 945, 1593, 1628, 1975
Bst4CI	ACNGT	5 cut(s)	336, 1199, 1805, 1821, 1984
Bst6I	CTCTTC	3 cut(s)	648, 1089, 2339
BstACI	GRCGYC	2 cut(s)	366, 593
BstAPI	GCANNNNNTGC	2 cut(s)	1328, 1780
BstAUI	TGTACA	2 cut(s)	780, 2397
BstC8I	GCNNGC	8 cut(s)	317, 370, 374, 562, 1548, 1666, 1747, 1889
BstDSI	CCRYGG	2 cut(s)	2377, 2484
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	7 cut(s)	406, 973, 1052, 1223, 1864, 2193, 2480
BstFNI	CGCG	5 cut(s)	94, 129, 230, 1995, 2392
BstH2I	RGCGCY	2 cut(s)	596, 801
BstHHI	GCGC	8 cut(s)	50, 131, 232, 261, 595, 722, 800, 1997
BstMAI	GTCTC	8 cut(s)	103, 395, 445, 1227, 1413, 1494, 1675, 2255
BstMCI	CGRYCG	2 cut(s)	116, 388
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 256, 510, 1003, 1328, 1381, 1780
BstNI	CCWGG	9 cut(s)	163, 221, 341, 418, 428, 945, 1593, 1628, 1975
BstNSI	RCATGY	4 cut(s)	1550, 1668, 2451, 2531
BstSFI	CTRYAG	1 cut(s)	1584
BstSLI	GKGCMC	2 cut(s)	480, 1333
BstUI	CGCG	5 cut(s)	94, 129, 230, 1995, 2392
BstV1I	GCAGC	8 cut(s)	62, 73, 331, 388, 477, 1057, 2547, 2550
BstV2I	GAAGAC	5 cut(s)	63, 548, 1458, 1854, 2229
BstX2I	RGATCY	4 cut(s)	1714, 1906, 1970, 2176
BstYI	RGATCY	4 cut(s)	1714, 1906, 1970, 2176
BstZ17I	GTATAC	1 cut(s)	1118
BstZI	CGGCCG	1 cut(s)	385
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	8 cut(s)	119, 166, 224, 344, 387, 416, 958, 1749
BtgI	CCRYGG	2 cut(s)	2377, 2484
BtsCI	GGATG	7 cut(s)	406, 973, 1052, 1223, 1864, 2193, 2480
BtsI	GCAGTG	2 cut(s)	715, 1541
BtsIMutI	CAGTG	9 cut(s)	332, 353, 715, 891, 1204, 1376, 1541, 2082, 2142
BtuMI	TCGCGA	1 cut(s)	94
BveI	ACCTGC	3 cut(s)	412, 562, 623
Cac8I	GCNNGC	8 cut(s)	317, 370, 374, 562, 1548, 1666, 1747, 1889
CaiI	CAGNNNCTG	4 cut(s)	340, 427, 1535, 1897
CciI	TCATGA	1 cut(s)	2493
CfoI	GCGC	8 cut(s)	50, 131, 232, 261, 595, 722, 800, 1997
Cfr10I	RCCGGY	1 cut(s)	2457
Cfr13I	GGNCC	7 cut(s)	159, 223, 343, 424, 772, 1040, 1589
CseI	GACGC	3 cut(s)	67, 256, 374
DinI	GGCGCC	1 cut(s)	594
DraI	TTTAAA	1 cut(s)	1570
EaeI	YGGCCR	3 cut(s)	164, 385, 1747
EagI	CGGCCG	1 cut(s)	385
Eam1104I	CTCTTC	3 cut(s)	648, 1089, 2339
EarI	CTCTTC	3 cut(s)	648, 1089, 2339
EclXI	CGGCCG	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	2484
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	3 cut(s)	445, 1227, 1494
Eco47I	GGWCC	5 cut(s)	159, 424, 772, 1040, 1589
Eco47III	AGCGCT	1 cut(s)	799
Eco52I	CGGCCG	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	3 cut(s)	424, 772, 1040
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	9 cut(s)	161, 219, 339, 416, 426, 943, 1591, 1626, 1973
EcoT14I	CCWWGG	1 cut(s)	2484
EcoT22I	ATGCAT	2 cut(s)	1725, 1776
EcoT38I	GRGCYC	1 cut(s)	18
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	2484
Esp3I	CGTCTC	2 cut(s)	395, 1675
FalI	AAGNNNNNCTT	4 cut(s)	977, 1009, 1380, 1412
FaqI	GGGAC	2 cut(s)	322, 1026
FauI	CCCGC	3 cut(s)	134, 284, 1596
FauNDI	CATATG	2 cut(s)	567, 682
FbaI	TGATCA	2 cut(s)	853, 1363
FblI	GTMKAC	1 cut(s)	1117
FokI	GGATG	7 cut(s)	393, 980, 1039, 1230, 1871, 2200, 2467
FriOI	GRGCYC	1 cut(s)	18
FspBI	CTAG	4 cut(s)	561, 803, 1334, 2171
FspI	TGCGCA	1 cut(s)	721
GlaI	GCGC	8 cut(s)	49, 130, 231, 260, 594, 721, 799, 1996
GsaI	CCCAGC	2 cut(s)	828, 1182
GsuI	CTGGAG	4 cut(s)	308, 449, 576, 2126
HaeII	RGCGCY	2 cut(s)	596, 801
HaeIII	GGCC	8 cut(s)	119, 166, 224, 344, 387, 416, 958, 1749
HapII	CCGG	7 cut(s)	198, 284, 394, 1082, 1678, 1750, 2458
HgaI	GACGC	3 cut(s)	67, 256, 374
HhaI	GCGC	8 cut(s)	50, 131, 232, 261, 595, 722, 800, 1997
Hin1I	GRCGYC	2 cut(s)	366, 593
Hin6I	GCGC	8 cut(s)	48, 129, 230, 259, 593, 720, 798, 1995
HinP1I	GCGC	8 cut(s)	48, 129, 230, 259, 593, 720, 798, 1995
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaII	CCGG	7 cut(s)	198, 284, 394, 1082, 1678, 1750, 2458
HphI	GGTGA	6 cut(s)	265, 395, 1729, 1765, 2129, 2509
Hpy166II	GTNNAC	8 cut(s)	138, 153, 478, 1118, 1195, 1265, 1331, 1598
Hpy188I	TCNGA	8 cut(s)	534, 753, 844, 1305, 1504, 1927, 2159, 2416
Hpy8I	GTNNAC	8 cut(s)	138, 153, 478, 1118, 1195, 1265, 1331, 1598
Hpy99I	CGWCG	5 cut(s)	29, 61, 292, 368, 386
HpyAV	CCTTC	8 cut(s)	529, 750, 865, 1237, 1407, 2224, 2369, 2445
HpyCH4III	ACNGT	5 cut(s)	336, 1199, 1805, 1821, 1984
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 256, 510, 1003, 1328, 1381, 1780
Hsp92I	GRCGYC	2 cut(s)	366, 593
HspAI	GCGC	8 cut(s)	48, 129, 230, 259, 593, 720, 798, 1995
KasI	GGCGCC	1 cut(s)	592
KflI	GGGWCCC	1 cut(s)	1040
Kpn2I	TCCGGA	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	853, 1363
Lsp1109I	GCAGC	8 cut(s)	62, 73, 331, 388, 477, 1057, 2547, 2550
LweI	GCATC	9 cut(s)	159, 1061, 1464, 1712, 1732, 1849, 1918, 2071, 2178
MaeI	CTAG	4 cut(s)	561, 803, 1334, 2171
MaeIII	GTNAC	4 cut(s)	635, 1464, 1539, 2017
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	4 cut(s)	1714, 1906, 1970, 2176
MhlI	GDGCHC	7 cut(s)	18, 353, 401, 480, 1333, 1386, 2142
MluCI	AATT	8 cut(s)	82, 88, 176, 619, 676, 1014, 1289, 1565
Mly113I	GGCGCC	1 cut(s)	593
MmeI	TCCRAC	4 cut(s)	63, 945, 1840, 2154
Mph1103I	ATGCAT	2 cut(s)	1725, 1776
MroI	TCCGGA	1 cut(s)	393
MseI	TTAA	8 cut(s)	663, 984, 1446, 1569, 1638, 1769, 2046, 2058
MslI	CAYNNNNRTG	3 cut(s)	896, 1389, 2199
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	7 cut(s)	198, 284, 394, 1082, 1678, 1750, 2458
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	4 cut(s)	279, 826, 989, 1654
MvaI	CCWGG	9 cut(s)	163, 221, 341, 418, 428, 945, 1593, 1628, 1975
MvnI	CGCG	5 cut(s)	94, 129, 230, 1995, 2392
MwoI	GCNNNNNNNGC	7 cut(s)	116, 256, 510, 1003, 1328, 1381, 1780
NarI	GGCGCC	1 cut(s)	593
NciI	CCSGG	2 cut(s)	1082, 1751
NcoI	CCATGG	1 cut(s)	2484
NdeI	CATATG	2 cut(s)	567, 682
NheI	GCTAGC	1 cut(s)	560
NlaIV	GGNNCC	8 cut(s)	594, 774, 1041, 1042, 1716, 1908, 1972, 2375
NmeAIII	GCCGAG	2 cut(s)	157, 569
NmuCI	GTSAC	1 cut(s)	1539
NruI	TCGCGA	1 cut(s)	94
NsbI	TGCGCA	1 cut(s)	721
NsiI	ATGCAT	2 cut(s)	1725, 1776
NspI	RCATGY	4 cut(s)	1550, 1668, 2451, 2531
OliI	CACNNNNGTG	1 cut(s)	896
PaeI	GCATGC	2 cut(s)	1550, 1668
PagI	TCATGA	1 cut(s)	2493
PaqCI	CACCTGC	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	416
PciI	ACATGT	1 cut(s)	2527
PctI	GAATGC	4 cut(s)	279, 826, 989, 1654
PfeI	GAWTC	5 cut(s)	29, 1505, 1686, 1894, 1922
PflFI	GACNNNGTC	3 cut(s)	157, 239, 437
PflMI	CCANNNNNTGG	2 cut(s)	520, 1822
PfoI	TCCNGGA	2 cut(s)	426, 1973
Ple19I	CGATCG	1 cut(s)	116
PluTI	GGCGCC	1 cut(s)	596
PpuMI	RGGWCCY	3 cut(s)	424, 772, 1040
PscI	ACATGT	1 cut(s)	2527
Psp5II	RGGWCCY	3 cut(s)	424, 772, 1040
Psp6I	CCWGG	9 cut(s)	161, 219, 339, 416, 426, 943, 1591, 1626, 1973
PspFI	CCCAGC	2 cut(s)	824, 1178
PspGI	CCWGG	9 cut(s)	161, 219, 339, 416, 426, 943, 1591, 1626, 1973
PspN4I	GGNNCC	8 cut(s)	594, 774, 1041, 1042, 1716, 1908, 1972, 2375
PspPI	GGNCC	7 cut(s)	159, 223, 343, 424, 772, 1040, 1589
PspPPI	RGGWCCY	3 cut(s)	424, 772, 1040
PstNI	CAGNNNCTG	4 cut(s)	340, 427, 1535, 1897
PsuI	RGATCY	4 cut(s)	1714, 1906, 1970, 2176
PsyI	GACNNNGTC	3 cut(s)	157, 239, 437
PvuI	CGATCG	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	94
RseI	CAYNNNNRTG	3 cut(s)	896, 1389, 2199
SaqAI	TTAA	8 cut(s)	663, 984, 1446, 1569, 1638, 1769, 2046, 2058
Sau96I	GGNCC	7 cut(s)	159, 223, 343, 424, 772, 1040, 1589
ScaI	AGTACT	1 cut(s)	518
SduI	GDGCHC	7 cut(s)	18, 353, 401, 480, 1333, 1386, 2142
SfaNI	GCATC	9 cut(s)	159, 1061, 1464, 1712, 1732, 1849, 1918, 2071, 2178
SfcI	CTRYAG	1 cut(s)	1584
SfoI	GGCGCC	1 cut(s)	594
SinI	GGWCC	5 cut(s)	159, 424, 772, 1040, 1589
SmiMI	CAYNNNNRTG	3 cut(s)	896, 1389, 2199
SmlI	CTYRAG	1 cut(s)	1379
SmoI	CTYRAG	1 cut(s)	1379
SpeI	ACTAGT	1 cut(s)	1333
SphI	GCATGC	2 cut(s)	1550, 1668
Sse9I	AATT	8 cut(s)	82, 88, 176, 619, 676, 1014, 1289, 1565
SseBI	AGGCCT	1 cut(s)	416
SspDI	GGCGCC	1 cut(s)	592
SspMI	CTAG	4 cut(s)	561, 803, 1334, 2171
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	2484
TaaI	ACNGT	5 cut(s)	336, 1199, 1805, 1821, 1984
TaqI	TCGA	7 cut(s)	27, 659, 1058, 1404, 1411, 1728, 2428
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	8 cut(s)	82, 88, 176, 619, 676, 1014, 1289, 1565
TatI	WGTACW	7 cut(s)	492, 516, 780, 1393, 1597, 2244, 2397
TauI	GCSGC	6 cut(s)	56, 110, 204, 465, 507, 2395
TfiI	GAWTC	5 cut(s)	29, 1505, 1686, 1894, 1922
Tru1I	TTAA	8 cut(s)	663, 984, 1446, 1569, 1638, 1769, 2046, 2058
Tru9I	TTAA	8 cut(s)	663, 984, 1446, 1569, 1638, 1769, 2046, 2058
TscAI	CASTG	9 cut(s)	332, 353, 722, 898, 1204, 1376, 1548, 2089, 2142
TseFI	GTSAC	1 cut(s)	1539
TseI	GCWGC	8 cut(s)	50, 61, 319, 376, 465, 1070, 2535, 2538
Tsp45I	GTSAC	1 cut(s)	1539
TspDTI	ATGAA	5 cut(s)	172, 598, 669, 1199, 2427
TspGWI	ACGGA	4 cut(s)	229, 305, 560, 2366
TspRI	CASTG	9 cut(s)	332, 353, 722, 898, 1204, 1376, 1548, 2089, 2142
Tth111I	GACNNNGTC	3 cut(s)	157, 239, 437
Van91I	CCANNNNNTGG	2 cut(s)	520, 1822
VneI	GTGCAC	2 cut(s)	476, 1329
VpaK11BI	GGWCC	5 cut(s)	159, 424, 772, 1040, 1589
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	2 cut(s)	676, 1565
XceI	RCATGY	4 cut(s)	1550, 1668, 2451, 2531
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1823, 2528
XmiI	GTMKAC	1 cut(s)	1117
XspI	CTAG	4 cut(s)	561, 803, 1334, 2171
ZrmI	AGTACT	1 cut(s)	518
Zsp2I	ATGCAT	2 cut(s)	1725, 1776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.