Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007796

Physical Location & Seq

Genomic Coordinates Reverse (-)

95736112 .. 95737741

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTGAGGTTTCAAGCCGGCCGTATTCAAGCAGAGTGCTACCGCTTCGGATCTCTTGCGGTGGATCATGGATACAGAGAGAACTCTACTGCAGCTGAGTTAGCTGATTTTGCATCTAAGGTGATGCATCTTGATTATTTCACCTTTGCTGGCCGGGTGATTGCGTTAGCTTTAATGCATAAAGTGCAAGTGGACATAATTCTGGAAATGGATCCCGACTTTATTGATTCAGATGCTTTAGGATTGGCATTTGTTAGAGAAGTGGAGGAGTTGGGATCCAGGAAAACTGTTGAGGTTTGCGCTGGTGGGAGAAACATTGTTGTAACCAGCAAGAACAGGGAGGAATATGTTAAACTTCTTATTAAGCATCGGTTTGTCATATCTATCACTGAACAAGTGAAGCATTTTGCAAAAGGTTTTGGTGATATTCTCTCCAACTCAGTGCTCCAGACTTTTCTTTTCCGAAGTTTGGAGCTAGAAGATCTTGATTGGATGCTGCATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

169

Amino Acids

19.19

Weight (kDa)

5.86

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	76 - 158	4.3e-16	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12570
fragaria_vesca	FvH4_3g00910 FvH4_3g00910
malus_domestica	MD05G1358400.v1.1 MD10G1332500.v1.1
prunus_persica	Prupe.4G009700_v2.0.a1 Prupe.4G009700_v2.0.a1
pyrus_communis	pycom05g32410 pycom10g28190
rosa_chinensis	RchiOBHm_Chr5g0001411 RchiOBHm_Chr5g0001431
rosa_laevigata	RLG00000030927
rosa_multiflora	Rmu_sc0003749.1_g000014
rosa_roxburghii	Rroxscaffold_1G00074960 Rroxscaffold_1G00074970
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010900 Rh5AG011000 Rh5BG013500 Rh5CG011900 Rh5CG012000 Rh5DG011200 Rh7AG192400
rosa_wichuraiana	Rw5G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 59
AclWI	GGATC	6 cut(s)	58, 72, 206, 219, 270, 283
AcoI	YGGCCR	2 cut(s)	19, 151
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	14, 29
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	95, 104, 170, 475
AluI	AGCT	4 cut(s)	95, 104, 170, 475
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	6 cut(s)	58, 72, 206, 219, 270, 283
AoxI	GGCC	2 cut(s)	19, 151
ApeKI	GCWGC	2 cut(s)	92, 496
AspLEI	GCGC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	133, 133, 169, 434
BamHI	GGATCC	2 cut(s)	211, 275
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	104, 483
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	2 cut(s)	93, 497
BlsI	GCNGC	2 cut(s)	94, 498
Bme1390I	CCNGG	2 cut(s)	155, 280
BmiI	GGNNCC	2 cut(s)	213, 277
BmrFI	CCNGG	2 cut(s)	155, 280
BmsI	GCATC	6 cut(s)	114, 122, 136, 223, 376, 483
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse118I	RCCGGY	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	2 cut(s)	87, 453
BseRI	GAGGAG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	104, 483
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	21, 153
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	18, 154
BslI	CCNNNNNNNGG	1 cut(s)	469
BsnI	GGCC	2 cut(s)	21, 153
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	5 cut(s)	50, 64, 211, 275, 481
BspACI	CCGC	2 cut(s)	43, 59
BspANI	GGCC	2 cut(s)	21, 153
BspCNI	CTCAG	2 cut(s)	88, 452
BspLI	GGNNCC	2 cut(s)	213, 277
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	6 cut(s)	58, 72, 206, 219, 270, 283
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	5 cut(s)	50, 64, 211, 275, 481
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	19, 151
BstDEI	CTNAG	3 cut(s)	96, 117, 439
BstF5I	GGATG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	5 cut(s)	53, 67, 214, 278, 484
BstMBI	GATC	5 cut(s)	50, 64, 211, 275, 481
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 110, 184
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	153, 278
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	104, 483
BstX2I	RGATCY	4 cut(s)	50, 211, 275, 481
BstYI	RGATCY	4 cut(s)	50, 211, 275, 481
BstZI	CGGCCG	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	21, 153
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	387, 447
Cac8I	GCNNGC	2 cut(s)	19, 151
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	17
CviAII	CATG	2 cut(s)	68, 500
CviJI	RGCY	7 cut(s)	17, 21, 95, 104, 153, 170, 475
CviKI_1	RGCY	7 cut(s)	17, 21, 95, 104, 153, 170, 475
DdeI	CTNAG	3 cut(s)	96, 117, 439
DpnI	GATC	5 cut(s)	52, 66, 213, 277, 483
DpnII	GATC	5 cut(s)	50, 64, 211, 275, 481
EaeI	YGGCCR	2 cut(s)	19, 151
EagI	CGGCCG	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	278
EcoT22I	ATGCAT	2 cut(s)	129, 180
FaeI	CATG	2 cut(s)	71, 503
FaiI	YATR	6 cut(s)	69, 180, 197, 348, 380, 501
FatI	CATG	2 cut(s)	67, 499
Fnu4HI	GCNGC	2 cut(s)	93, 497
FokI	GGATG	1 cut(s)	505
Fsp4HI	GCNGC	2 cut(s)	93, 497
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	93, 497
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	21, 153
HapII	CCGG	2 cut(s)	18, 154
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	71, 503
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	2 cut(s)	18, 154
HphI	GGTGA	4 cut(s)	133, 133, 169, 434
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	50, 232, 464
Hpy188III	TCNNGA	5 cut(s)	131, 203, 215, 448, 485
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	7 cut(s)	92, 113, 127, 178, 187, 410, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 110, 184
HpyF3I	CTNAG	3 cut(s)	96, 117, 439
Hsp92II	CATG	2 cut(s)	71, 503
HspAI	GCGC	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	50, 64, 211, 275, 481
LmnI	GCTCC	2 cut(s)	450, 472
Lsp1109I	GCAGC	2 cut(s)	104, 483
LweI	GCATC	6 cut(s)	114, 122, 136, 223, 376, 483
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	5 cut(s)	52, 66, 213, 277, 483
MboI	GATC	5 cut(s)	50, 64, 211, 275, 481
MboII	GAAGA	1 cut(s)	491
MflI	RGATCY	4 cut(s)	50, 211, 275, 481
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	3 cut(s)	259, 286, 334
Mph1103I	ATGCAT	2 cut(s)	129, 180
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	3 cut(s)	173, 351, 363
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	18, 154
MspR9I	CCNGG	2 cut(s)	155, 280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	101, 110, 184
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	5 cut(s)	50, 64, 211, 275, 481
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	71, 503
NlaIV	GGNNCC	2 cut(s)	213, 277
NsiI	ATGCAT	2 cut(s)	129, 180
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	94, 498
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	213, 277
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	4 cut(s)	50, 211, 275, 481
PvuII	CAGCTG	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	173, 351, 363
SatI	GCNGC	2 cut(s)	93, 497
Sau3AI	GATC	5 cut(s)	50, 64, 211, 275, 481
ScrFI	CCNGG	2 cut(s)	155, 280
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	9 cut(s)	11, 97, 106, 123, 146, 172, 297, 418, 477
SfaNI	GCATC	6 cut(s)	114, 122, 136, 223, 376, 483
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	43, 59
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	153, 278
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	173, 351, 363
Tru9I	TTAA	3 cut(s)	173, 351, 363
TscAI	CASTG	2 cut(s)	394, 447
TseI	GCWGC	2 cut(s)	92, 496
TspRI	CASTG	2 cut(s)	394, 447
XspI	CTAG	1 cut(s)	476
Zsp2I	ATGCAT	2 cut(s)	129, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.