FvH4_3g01250

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014010
Physical Location & Seq
Forward (+)
604332 .. 607987
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01250.t2

Sequence Viewer

Length: 1098 bp
ATGGCAGCTGCGACTCTGTCTTCGACAGTGTTTGTAACCTCAGCTTCATGTTCTTCTTCTTCTTCTTCTTTGTATTCTTCGTATCTCAAACCAAGGACCTTGAAGGCTTCAGCTTTGACTTCCTCGTCATCTATTTGCTCTCTGAATGGTTTTCCTTGCAACCCCATCTCAGCTCGTCCATCATTTCACAGGAATTTGTATAGGGTACATGCAACTATTCTCCAAGATGAAGAAGAGAAAGTGGTGGTGGAGGAGTCCTTTGAGTTCAAGGCAACTACCTCTGATGAAGTGAAAGCCAGCAGTGGGGAGGCCTCTGAGAGTGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGTGAACAGTCCATCAACATTTTCCTAACGGATACAGTGATTAAGATACTTGATACTCTTTACCATGACCGTGATTATGCGAGGTTCTTTGTACTGGAAACTATTGCGAGGGTTCCTTACTTTGCCTTTATGTCTGTTCTACACATGTATGAGAGTTTTGGCTGGTGGAGAAGAAGTGAGTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGGGGAAATGCTTGGTGGTTTGATCGCTTTCTTGCTCAGCACATTGCAGTCTTCTATTACTTTATGACGGTTTTTATGTACATAATAAGCCCACGAATGGCCTATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCAACCTACGACAAGTTTATCAAGGCTGAAGAAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAAGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTATGATGTATTTCTGAACATAAGAGACGACGAGGCTGAGCACTGTAAGACGATGAAGGCCTGCCAGACTCACGGGAACCTCTCTTCTCCTCATTCACTCATAGAAGATGAGTCTACCTGTGTGGTTCCTGAAACAGATTGTGAAGGTATTGTAGATTGTTTAACAAAATCCGTTACGACGAAACCAGCAGAGTGA

Protein Analysis

366

Amino Acids

41.76

Weight (kDa)

5.24

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 128 - 198 8e-12 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22260
fragaria_vesca FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica Prupe.4G013400_v2.0.a1
pyrus_communis pycom10g27840
rosa_chinensis RchiOBHm_Chr5g0001781
rosa_laevigata RLG00000030972
rosa_multiflora Rmu_ssc0000237.1_g000013
rosa_roxburghii Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa Rorug04G0393000
rosa_samantha Rh5BG017700 Rh5DG015800
rosa_wichuraiana Rw5G001380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 1016
AcsI RAATTY 3 cut(s) 193, 851, 898
AcuI CTGAAG 2 cut(s) 93, 789
AfaI GTAC 4 cut(s) 207, 450, 683, 839
AfiI CCNNNNNNNGG 2 cut(s) 303, 700
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 5 cut(s) 103, 268, 544, 744, 857
AluBI AGCT 5 cut(s) 8, 44, 113, 173, 564
AluI AGCT 5 cut(s) 8, 44, 113, 173, 564
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 1 cut(s) 921
AoxI GGCC 5 cut(s) 309, 702, 730, 884, 960
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 3 cut(s) 193, 851, 898
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 96, 730
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 96
AxyI CCTNAGG 1 cut(s) 801
BbsI GAAGAC 2 cut(s) 12, 646
Bbv12I GWGCWC 1 cut(s) 945
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 173, 187, 377
BciVI GTATCC 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 2 cut(s) 639, 939
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 96, 730
BmiI GGNNCC 3 cut(s) 471, 980, 1029
BmsI GCATC 1 cut(s) 564
BpiI GAAGAC 2 cut(s) 12, 646
Bpu10I CCTNAGC 1 cut(s) 40
Bpu1102I GCTNAGC 2 cut(s) 639, 939
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 700
Bse1I ACTGG 2 cut(s) 456, 829
Bse21I CCTNAGG 1 cut(s) 801
Bse3DI GCAATG 1 cut(s) 645
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 303, 700
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 7 cut(s) 54, 183, 306, 549, 653, 792, 930
BseNI ACTGG 2 cut(s) 456, 829
BseRI GAGGAG 2 cut(s) 266, 981
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 5 cut(s) 311, 704, 732, 886, 962
BsiHKAI GWGCWC 1 cut(s) 945
BslI CCNNNNNNNGG 2 cut(s) 303, 700
BsmAI GTCTC 1 cut(s) 921
BsmBI CGTCTC 1 cut(s) 921
BsnI GGCC 5 cut(s) 311, 704, 732, 886, 962
Bsp1286I GDGCHC 1 cut(s) 945
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 1 cut(s) 625
Bsp1720I GCTNAGC 2 cut(s) 639, 939
BspANI GGCC 5 cut(s) 311, 704, 732, 886, 962
BspCNI CTCAG 7 cut(s) 53, 182, 307, 550, 652, 793, 931
BspLI GGNNCC 3 cut(s) 471, 980, 1029
BsrDI GCAATG 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 2 cut(s) 456, 829
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 92
Bst4CI ACNGT 6 cut(s) 28, 366, 394, 428, 673, 947
Bst6I CTCTTC 3 cut(s) 228, 768, 991
BstAPI GCANNNNNTGC 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 298, 795, 964
BstDEI CTNAG 7 cut(s) 40, 169, 315, 558, 639, 801, 939
BstKTI GATC 1 cut(s) 628
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 1 cut(s) 625
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNSI RCATGY 2 cut(s) 212, 505
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 2 cut(s) 12, 646
Bsu36I CCTNAGG 1 cut(s) 801
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 5 cut(s) 311, 704, 732, 886, 962
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 5 cut(s) 33, 307, 399, 822, 943
Cac8I GCNNGC 3 cut(s) 298, 795, 964
Cfr13I GGNCC 2 cut(s) 96, 730
Csp6I GTAC 4 cut(s) 206, 449, 682, 838
CviAII CATG 6 cut(s) 48, 209, 422, 502, 592, 734
CviQI GTAC 4 cut(s) 206, 449, 682, 838
DdeI CTNAG 7 cut(s) 40, 169, 315, 558, 639, 801, 939
DpnI GATC 1 cut(s) 627
DpnII GATC 1 cut(s) 625
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 3 cut(s) 228, 768, 991
EarI CTCTTC 3 cut(s) 228, 768, 991
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 2 cut(s) 311, 962
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 93, 789
Eco81I CCTNAGG 1 cut(s) 801
EcoO109I RGGNCCY 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 921
FaeI CATG 6 cut(s) 51, 212, 425, 505, 595, 737
FatI CATG 6 cut(s) 47, 208, 421, 501, 591, 733
FblI GTMKAC 1 cut(s) 1016
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 330
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 5 cut(s) 311, 704, 732, 886, 962
Hin1II CATG 6 cut(s) 51, 212, 425, 505, 595, 737
HinfI GANTC 5 cut(s) 13, 254, 778, 970, 1013
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 362, 1017
Hpy188I TCNGA 6 cut(s) 144, 283, 316, 718, 783, 918
Hpy188III TCNNGA 4 cut(s) 800, 864, 879, 1031
Hpy8I GTNNAC 2 cut(s) 362, 1017
Hpy99I CGWCG 2 cut(s) 935, 1084
HpyAV CCTTC 5 cut(s) 97, 336, 876, 952, 1040
HpyCH4III ACNGT 6 cut(s) 28, 366, 394, 428, 673, 947
HpyCH4V TGCA 6 cut(s) 159, 212, 550, 577, 650, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 7 cut(s) 40, 169, 315, 558, 639, 801, 939
Hsp92II CATG 6 cut(s) 51, 212, 425, 505, 595, 737
Kzo9I GATC 1 cut(s) 625
LmnI GCTCC 1 cut(s) 802
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 564
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 3 cut(s) 34, 830, 1075
MalI GATC 1 cut(s) 627
MboI GATC 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 945
MluCI AATT 6 cut(s) 193, 599, 788, 851, 874, 898
MlyI GAGTC 4 cut(s) 7, 263, 964, 1022
Mph1103I ATGCAT 1 cut(s) 739
MseI TTAA 2 cut(s) 399, 1064
MslI CAYNNNNRTG 2 cut(s) 426, 504
MspA1I CMGCKG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 583
NdeII GATC 1 cut(s) 625
NlaIII CATG 6 cut(s) 51, 212, 425, 505, 595, 737
NlaIV GGNNCC 3 cut(s) 471, 980, 1029
NmuCI GTSAC 1 cut(s) 830
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 2 cut(s) 212, 505
PceI AGGCCT 2 cut(s) 311, 962
PciI ACATGT 1 cut(s) 501
PfeI GAWTC 1 cut(s) 778
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 4 cut(s) 7, 262, 964, 1021
PpsI GAGTC 4 cut(s) 7, 262, 964, 1021
PpuMI RGGWCCY 1 cut(s) 96
PscI ACATGT 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 96
PspN4I GGNNCC 3 cut(s) 471, 980, 1029
PspPI GGNCC 2 cut(s) 96, 730
PspPPI RGGWCCY 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 4 cut(s) 207, 450, 683, 839
RsaNI GTAC 4 cut(s) 206, 449, 682, 838
RseI CAYNNNNRTG 2 cut(s) 426, 504
SaqAI TTAA 2 cut(s) 399, 1064
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 1 cut(s) 625
Sau96I GGNCC 2 cut(s) 96, 730
SchI GAGTC 4 cut(s) 7, 263, 964, 1022
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 1 cut(s) 564
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 426, 504
Sse9I AATT 6 cut(s) 193, 599, 788, 851, 874, 898
SseBI AGGCCT 2 cut(s) 311, 962
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 2 cut(s) 311, 962
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 6 cut(s) 28, 366, 394, 428, 673, 947
TaqI TCGA 2 cut(s) 23, 880
TasI AATT 6 cut(s) 193, 599, 788, 851, 874, 898
TatI WGTACW 3 cut(s) 448, 681, 837
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 2 cut(s) 399, 1064
Tru9I TTAA 2 cut(s) 399, 1064
TscAI CASTG 5 cut(s) 33, 307, 399, 829, 950
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 5 cut(s) 36, 243, 300, 864, 971
TspGWI ACGGA 2 cut(s) 401, 1063
TspRI CASTG 5 cut(s) 33, 307, 399, 829, 950
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 3 cut(s) 193, 851, 898
XceI RCATGY 2 cut(s) 212, 505
XmiI GTMKAC 1 cut(s) 1016
XspI CTAG 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.